Call4Help Session June


The BioImage Informatics Facility invites to Call4Help Session

Every 1st Tuesday of the month the BioImage Informatics Facility together with microscopy expert Sylvie Le Guyader (LCI, Karolinska Institutet) organizes a Call4Help session. The aim is to offer combined expertise towards microscopy and bioimage analysis. All researchers from Swedish institutes can participate.

The ideal timepoint to join the Call4Help session is when a researcher has performed pilot experiments and has tried out first analysis approaches – but before having recorded hundreds of images. Combining BIIF’s expertise in BioImage Analysis with microscopy expertise we can discuss ways to record the images that allow analysis afterward. We will discuss different analysis approaches using mainly open-source software (Fiji, CellProfiler, KNIME, QuPath, Ilastik), but also commercial systems, if needed (Imaris).

How to participate?

Step 1:

Prepare a short presentation (5-7 min)  – use the following template for your presentation

Step 2:

Step 3:

Join the zoom-session following https://sunet.zoom.us/j/320726318

If your problem is selected for presentation, you will get a time-slot of 30 minutes within the session. If not, you are welcome to join the discussion anyway!

What are the Deadlines?

Submission of a problem and upload of example data: one week before the session (Tuesday)

Notification about participation: Thursday of the week before the session

Session: 1st Tuesday/month 9:00-12:00. If this is a holiday we will announce a different day.