Bioinformatics Short-term Support and Infrastructure (BILS)National facility
Bioinformatics support and infrastructure is a facility at SciLifeLab that provides expertise in multiple bioinformatics areas (please see our services and equipments below). The facility is a part of NBIS, the National Bioinformatics Infrastructure Sweden. NBIS is a distributed national research infrastructure supported by the Swedish Research Council providing bioinformatics support to life science researchers in Sweden. NBIS is also the Swedish contact point to the European infrastructure for biological information ELIXIR. The facility has NBIS-associated personnel in Umeå, Uppsala, Stockholm, Gothenburg, Linköping and Lund. In addition, the facility offers access to Uppsala-based application experts within evolutionary biology.
- We can help with infrastructure related to bioinformatics. data storage, data publishing, access to computing and access to bioinformatics tools
- We provide expertise in multiple bioinformatics areas. Biostatistics, phylogenomics, metabolomics, systems biology, protein bioinformatics, mass-spectrometry proteomics, genome annotation and large scale sequencing (NGS) including metagenomics
- RNA seq analysis
- Genome assembly and annotation
- Multivariate analysis
- Evolutionary analysis of proteins
- Ancestral state reconstructions
- Disorder and indel analysis
- Analysis platform for mass-spectrometry data
- Tools for phenomics analysis
- Cancer data analysis
- Systems development
- Mass spectrometry data storage
- Bioinformatics training, workshops
- Information about our NBIS staff expertise is available via this link
Our main resource is our staff. For compute and storage, we rely on the SNIC centres, where NBIS has access to dedicated partitions of the systems. NBIS has a dedicated cluster for genome annotation.
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