National online workshop open for PhD students, postdocs, researchers and other employees within Swedish academia. This course is run by the National Bioinformatics Infrastructure Sweden (NBIS).
Application closes: 2020-11-01
Confirmation to accepted students: 2020-11-06
Responsible teachers: Agata Smialowska, Olga Dethlefsen, Jakub Westholm
Please contact email@example.com for course specific questions.
This online training event has no fee. However, if you accept a position at the workshop and do not participate (no-show) you will be invoiced 2000 SEK.
*Please note that NBIS cannot invoice individuals.
This workshop builds on our previous Epigenomics Data Analysis workshop to introduce the best practice bioinformatics methods for processing, analyses and integration of epigenomics and functional genomics data.
Topics covered include
ChIP-seq and ATAC-seq: peak calling, peak independent/dependent quality metrics, differential binding and differential accessibility analysis; motif enrichment;
Data processing and analyses for differential methylation with Illumina EPIC arrays and Bisulfite-seq;
Functional analysis, including finding nearest genes and custom features, over-represented GO terms and Reactome pathways;
Integrative visualisations of epigenomics datasets;
RNA-seq integration for identification of targets of transcription factors;
Basic multi-omics exploration and integration;
Introduction to analysis of single cell functional genomics data (ATAC-seq).
Required for being able to follow the workshop and complete the computer exercises:
Due to limited space the workshop can accommodate maximum of 25 participants. If we receive more applications, participants will be selected based on several criteria. Selection criteria include correct entry requirements, motivation to attend the workshop as well as gender and geographical balance.
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