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SUMMARY:Introduction to bioinformatics using NGS data - Lund\, Umeå and Uppsala
DESCRIPTION:This intense one-week workshop provides an introduction to the analysis of next generation sequencing data. The workshop is open to PhD students\, post-docs\, and other researchers affiliated to Swedish academia and healthcare. It is organised by the National Bioinformatics Infrastructure Sweden (NBIS) and National Genomics Infrastructure (NGI). \n\n\n\n\n\n\n\nImportant dates\n\n\n\nApplication opens: 21-Nov-2022Application closes: 31-Dec-2022Information to accepted students will be sent:  Week 2\, 2023 \n\n\n\n\n\n\n\nVenues\n\n\n\nThis workshop runs in parallel on-site in Uppsala\, Umeå and Lund. Lectures will be streamed online from our Uppsala site (mainly) to the other classrooms. Several teaching assistants will be present in the Umeå\, Lund and Uppsala classrooms all week to help with exercises and questions. When registering you will be asked to select a preferred site. \n\n\n\nUppsalaTrippelrummet (E10:1307-1309)Entrance C11Biomedical Centre (BMC) / SciLifeLab / Uppsala UniversityHusargatan 3752 37 Uppsala \n\n\n\nUmeåUB341Universitetsbibioteket plan 3Umeå University901 87 Umeå \n\n\n\nLundSölvegatan 35Lund University223 62 Lund \n\n\n\n\n\n\n\nFor more detailed information about workshop syllabus\, learning outcomes and entry requirements\, please visit the workshop website. \n\n\n\nwebsite & Application\n\n\n\n\n\n\n\nContact\n\n\n\nEmail: edu.intro-ngsMalin Larsson\, Martin Dahlö\, Roy Francis \n\n\n\n\n\n\n\nCourse fee\n\n\n\nThis on-site training event costs 2000 SEK invoiced to the participant’s organisation. If you accept a position and do not participate (no-show) you will still be invoiced 2000 SEK. Please note that NBIS cannot invoice individuals. \n\n\n\n\n\n\n\nCourse content\n\n\n\nBriefly\, the workshop covers the followings major topics: \n\n\n\n\nWorking on the UNIX/LINUX command line\n\n\n\nBioinformatic/NGS data formats and QC\n\n\n\nDNA variant calling workflow essentials\n\n\n\nRNA sequence analysis workflow essentials\n\n\n\n\nLectures on the theory of concepts will be paired with practical computational exercises in the Linux environment. The practical exercises will focus on data from the Illumina platform\, but we will discuss other sequencing platforms and the advantages and challenges to using their data during the lectures. \n\n\n\nPlease note that NBIS training events do not provide any formal university credits. Attendees with full attendance and completion of tasks will be issued a certificate of participation indicating topics covered and duration of the workshop. 
URL:https://www.scilifelab.se/event/introduction-to-bioinformatics-using-ngs-data-2/
CATEGORIES:Course
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