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DTSTART;TZID=Europe/Stockholm:20240212T090000
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DTSTAMP:20260403T230349
CREATED:20231113T100039Z
LAST-MODIFIED:20231113T125832Z
UID:158514-1707728400-1708102800@www.scilifelab.se
SUMMARY:Single Cell RNA-Seq Data Analyses Workshop
DESCRIPTION:This workshop will introduce the best practice bioinformatics methods for analysing single cell RNA-seq data via a series of lectures and computer practicals. The total course duration is 5 days which includes 4 days of lectures and exercises followed by a “Bring Your Own Data” day where you get to practice your skills on a dataset of your choosing. \n\n\n\n\n\n\n\nThe course is organized by: National Bioinformatics Infrastructure Sweden (NBIS) \n\n\n\nResponsible teachers: Åsa Björklund\, Susanne Reinsbach\, Roy Francis \n\n\n\nContact information: edu.sc@nbis.se    \n\n\n\n\n\n\n\nImportant dates\n\n\n\nApplication open: 13 Nov 2023 \n\n\n\nApplication closes: 17 Jan 2024 \n\n\n\nConfirmation to accepted participants: Weeks 3-4\, 2024 \n\n\n\n\n\n\n\n\n\nApplication\n\n\n\n\n\nCourse website\n\n\n\n\n\n\n\n\n\nCourse fee\n\n\n\nThis on-site training event costs 3000 SEK for academic participants\, invoiced to the participant’s organisation. If you accept a position and do not participate (no-show) you will still be invoiced 3000 SEK. Please note that NBIS cannot invoice individuals. We ask non-academic applicants to contact us regarding the fee.  \n\n\n\n\n\n\n\nCourse content\n\n\n\n\nOverview of the current scRNAseq technologies\n\n\n\nBasic overview of pipelines for processing raw reads into expression values\n\n\n\nQuality control and normalization\n\n\n\nDimensionality reduction techniques\n\n\n\nData integration and batch correction\n\n\n\nDifferential gene expression\n\n\n\nClustering techniques\n\n\n\nCelltype prediction\n\n\n\nTrajectory inference analysis\n\n\n\nComparison of analysis toolkits: Seurat\, Scran and Scanpy\n\n\n\n\n\n\n\n\nEntry requirements\n\n\n\n\nYou are used to program in either R and/or Python\n\n\n\nYou already understand the basis of NGS technologies\n\n\n\nYou are able to analyse bulk RNA-sequencing data\n\n\n\nYou are used to navigate and use UNIX command line (bash)\n\n\n\nHave full access to your computer (admin permissions). Instructions on installation will be sent by email to accepted participants.\n\n\n\n\n\n\n\n\nSelection criteria\n\n\n\nDue to limited space\, the course accommodates a maximum of 25 participants. If we receive more applications\, participants will be selected based on selection criteria such as correct entry requirements\, motivation to attend the course as well as gender and geographical balance.
URL:https://www.scilifelab.se/event/single-cell-rna-seq-data-analyses-workshop/
LOCATION:Navet\, SciLifeLab Uppsala\, SciLifeLab Uppsala\, BMC C11\, Husargatan 3\, Uppsala\, 75237\, Sweden
CATEGORIES:Course
ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se
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