Uppsala PhD&Postdoc seminars: Niki Sarri & Ankit Gupta
2021-11-16 11:00 - 11:50 (Europe/Stockholm) | Online event via Zoom
Welcome to SciLifeLab Uppsala PhD&Postdoc seminars!We are very happy to host exciting talks by PhD students and Postdocs from a great variety of fields within SciLifeLab.The seminars will take online place every Tuesday from 11:00 to 11:50

For this occasion the seminars will be: Niki Sarri, PhD student in Carl-Henrik Heldin’s research groupTitle: Deubiquitinating enzymes USP4 and USP17 fine-tune the trafficking of PDGFRβ and affect PDGF-BB-induced STAT3 signallingAnkit Gupta, PhD student in Wählby lab, Division of Visual Information and InteractionTitle: SimSearch: A Human-in-the-Loop Learning Framework for Fast Detection of Regions of Interest in Microscopy Images

Campus Solna Seminar Series: Michael Hawgood and Akshay Sridhar
2021-11-11 13:00 - 14:00
Welcome to join the Campus Solna Seminar Series – an initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively), with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged.

The seminars are held Thursdays 13:00-13:50 and following current regulations, they will be broadcast via zoom.

This week

Exploring DNA Replication Using Super Resolution and Expansion MicroscopyMichael Hawgood (Jiri Bartek, alpha 5)

Lipid modulation of membrane protein functionAkshay Sridhar (Lucie Delemotte/Erik Lindahl)

Registration

Register to receive the zoom-link. The same zoom link applies for all Campus Solna Seminar Series, i.e. only one registration is necessary.

Campus Solna Seminar Series: Eva Gracia Villacampa and Lilit Nersisyan
2021-11-04 13:00 - 14:00
Welcome to join the Campus Solna Seminar Series – an initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively), with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged.

The seminars are held Thursdays 13:00-13:50 and following current regulations, they will be broadcast via zoom.

This week

Genome-wide Spatial Expression Profiling in FFPE tissuesEva Gracia Villacampa (Joakim Lundeberg, alpha 3)

RNA degradation analysis reveals ribosome dynamics in complex microbiome samplesLilit Nersisyan (Vicent Pelechano, gamma 5)

Registration

Register to receive the zoom-link. The same zoom link applies for all Campus Solna Seminar Series, i.e. only one registration is necessary.

Meet the Community Committees of SciLifeLab Campus Solna
2021-10-28 16:30 - 18:00 | Gamma 2 Lunchroom, SciLifeLab, Tomtebodavägen 23, Solna, Sweden
Committees of SciLifeLab warmly welcome you to the Networking event at SciLifeLab on 28th of October, 16:30, Gamma 2 kitchen.

You will meet committees of ScilifeLab:

– Phd and Postdoc Council

– Diversity, Equity and Inclusion Committee

– Public Outreach and Engagement Committee

You will learn what we are doing and how you can contribute and participate!

Afterwards – SciLifeLab Pub.

Looking forward to meet you!

Best regards,Committees of SciLifeLab

Campus Solna Seminar Series: Benilde Bonnefille and Deike Omnus
2021-10-28 13:00 - 14:00
Welcome to join the Campus Solna Seminar Series – an initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively), with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged.

The seminars are held Thursdays 13:00-13:50 and following current regulations, they will be broadcast via zoom.

This week

Nontarget analysis of river surface samples from Bangladesh: preliminary resultsBenilde Bonnefille (Jonathan Martin, alpha 2)

A novel heat shock protein activates the Lon protease at the onset of proteotoxic stressDeike Omnus (Kristina Jonas, gamma 5)

Registration

Register to receive the zoom-link. The same zoom link applies for all Campus Solna Seminar Series, i.e. only one registration is necessary.

Uppsala PhD&Postdoc seminars: Simone Fouché & Jana Immenschuh
2021-10-26 11:00 - 11:50 | Online event via Zoom
Welcome to the very first SciLifeLab Uppsala PhD&Postdoc seminars!We are very happy to host exciting talks by PhD students and Postdocs from a great variety of fields within SciLifeLab.

The seminars will take place every Tuesday from 11:00 to 11:50

For this very first occasion the seminars will be:

Towards unravelling the mystery of germline-restricted chromosomesSimone Fouché, Postdoc at the Suh Group, Dept. of Organismal Biology – Systematic BiologyMapping and characterization of aromatase gene expression in the male and female young adult rat brainJana Immenschuh, PhD student at the Neuropsychopharmacology Group, Dept. of Neuroscience

Abstracts

Title: Towards unravelling the mystery of germline-restricted chromosomes

Summary:Not all cells in eukaryotic organisms contain the same genome, but rather programmed DNA elimination occurs extensively across the Tree of Life, whereby fragments of the genome or entire chromosomes are removed during germline-soma differentiation. In zebra finch, a massive chromosome, the germline-restricted chromosome (GRC) is present in the germline and absent in the soma. Cytogenetic data suggest GRCs are widely distributed among songbirds. Despite the wide occurrence of programmed DNA elimination, the mechanisms of programmed DNA elimination, the function and the evolutionary significance of the phenomenon, are poorly understood. At present we are working on a reference assembly for the GRC in zebra finch in order to shed some light on the emergence and evolution of this enigmatic chromosome. Specifically we would like show whether: 1. Whether the GRC is always maternally inherited? 2. What is the population level variation and are some regions maintained by selection? 3. Which regions of the genome are more likely to be copied to the GRC, regions with functions related to development or highly recombining regions of regular chromosomes?

Title: Mapping and characterization of aromatase gene expression in the male and female young adult rat brain

Summary:The enzyme aromatase (Cyp19a1 gene) catalyzes the biosynthesis of estrogens from androgens. Besides several peripheral tissues, it is expressed in specific brain regions that are of relevance to emotional and cognitive functions in mammalian species, including rats and humans. Of interest, aromatase seems to be involved in non-reproductive functions in the brain, such as regulation of neurogenesis, synaptic transmission and neuroprotection and might be expressed in a sex-dependent manner. Investigation of its expression throughout the brain has shown to be outdated and imprecise, and is lacking the identification of sub regions with known sexual dimorphisms or functions related to sex differences in both males and females. Additionally, little is known about the identity of the neurons expressing aromatase. The present study sought to map the expression pattern of Cyp19a1 throughout the brain of young adult rats of both sexes and elucidate sex differences, as well as characterize in an exploratory fashion the cell types expressing this gene. The findings will advance the knowledge on aromatase and its role in the brain. As gonadal hormones affect the brain as well as mental health in a profound manner, this study might shed light on some of the underlying molecular underpinnings.

Campus Solna Seminar Series: Wen Zhong and Oskar Kviman
2021-10-21 13:00 - 14:00
Welcome to join the Campus Solna Seminar Series – an initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively), with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged.

The seminars are held Thursdays 13:00-13:50 and following current regulations, they will be broadcast via zoom.

This week

Next-generation plasma proteome profiling to monitor health and diseaseWen Zhong (Linn Fagerberg, alpha 6)

Ensembles of Variational ApproximationsOskar Kviman (Jens Lagergren, gamma 6)

Registration

Register to receive the zoom-link. The same zoom link applies for all Campus Solna Seminar Series, i.e. only one registration is necessary.

Campus Solna Seminar Series: Su Wang and Petter Sätterskog
2021-10-14 13:00 - 14:00
Welcome to join the Campus Solna Seminar Series – an initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively), with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged.

The seminars are held Thursdays 13:00-13:50 and following current regulations, they will be broadcast via zoom.

This week

Revealing the radial organization of mitotic chromosomes by mGPSeqSu Wang (Magda Bienko, Alpha 4)

A generative model of a tumor microenvironmentPetter Sätterskog (Jean Hausser, Alpha 5)

Registration

Register to receive the zoom-link. The same zoom link applies for all Campus Solna Seminar Series, i.e. only one registration is necessary.

StorM Retreat 2026
2021-10-12 11:30 - 2021-10-13 14:00 | Quality Hotel Ekoxen, Linköping, Klostergatan 68, Linköping, 582 23, Sweden
Welcome to the 2026 years STorM retreat

August 26-27

Venue: Linköping University and Ekoxen Hotel, Linköping, Sweden

The Swedish Tumor Microenvironment (STorM) network leverages the power of internationally leading research groups in the field spanning across the entire country. The overarching aim of the program is to identify novel communication pathways within the tumor microenvironment that can be exploited as cancer drug targets and biomarkers. The program will foster cross-disciplinary studies which optimally combines experimental studies in cell and animal models, correlative analyses of clinical samples, and cutting-edge technology.

Registration deadline: April 19

Register here

Program

6th SToRM retreat programDownload

Suggestions for accommodation (not covered by STorM)

Quality Hotel Exoxen (location of the meeting, close to LiU medical campus and hospital)

Elite Stora Hotellet (very central between railway station and meeting location, walking distance)

And Hotel (less central, few min walking to meeting location, closest to dinner location)

Partners

Cancerfonden, SciLifeLab Linköping, Linköping University

Organizing committee

Linda Bojmar, Assistant Professor, Docent, Linköping University (Chair)
Carolin Jönsson, Research Engineer, Linköping University
Josefine Sandström, Research Coordinator, SciLifeLab, Linköping University
Ikuan Sam, Postdoctoral fellow, Lund University
Daniel Reed, Postdoctoral fellow, Lund University
Anastasia Knyazeva, Postdoctoral Fellow, Umeå University
Hong Qian, Professor, Karolinska Institute

3rd StorM Program Retreat
2021-10-12 11:30 - 2021-10-13 14:00 | Krusenberg Herrgård, KRUSENBERG 436, Uppsala, 755 98
We would like to advertise the 3rd StorM program retreat, which will take place on October 12-13th at Krusenberg Herrgård, Uppsala, Sweden.

The 3rd STorM Retreat ScheduleDownload

Campus Solna Seminar Series: Xuexin Li and Steven Edwards
2021-10-07 13:00 - 14:00
Welcome to join the Campus Solna Seminar Series – an initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively), with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged.

The seminars are held Thursdays 13:00-13:50 and following current regulations, they will be broadcast via zoom.

This week

Identifying drugs that alleviate the toxicity of polyQ toxicityXuexin Li (Oscar Fernandez-Capetillo, alpha 4)

Measuring NK cell infiltration in a tumour spheroid modelSteven Edwards (Hjalmar Brismar, gamma 3)

Registration

Register to receive the zoom-link. The same zoom link applies for all Campus Solna Seminar Series, i.e. only one registration is necessary.

Genomics platform online retreat
2021-10-07 12:00 - 16:00 | Online event via Zoom
Welcome to the online retreat for the SciLifeLab Genomics platform staff. Our platform is a key player on life science in Sweden and have recently had a change of leadership. Join the meeting to catch up with the latest developments and future plans for the platform, and participate in discussions about our organization and activities. Make sure to sign up to receive your complimentary fika package, which we hope will facilitate a fun meeting!

To facilitate interaction, we recommend that participants connect to the meeting individually and not in group.

sign up here

Registration is closed

Program

12:00Welcome and presentation about of the platform, organization and plans for the future.Annika Jenmalm Jensen, SciLifeLab Infrastructure DirectorTuuli Lappalainen, Director of the Genomics platform and NGILars Feuk, Co-Director of the Genomics platform12:30Update from the National Genomics InfrastructureEllen Sherwood, Director of NGI SthlmJessica Nordlund, Director of SNP&SEQ12:50Update from the Microbial Single Cell Genomics unitJohan Ankarklev, Director of Microbial Single Cell Genomics13:00Update from the Ancient DNA unitMagnus Lundgren, Head of Ancient DNA13:10Short break13:15Scientific Keynote Mark Daly, University of Helsinki, Broad Institute14:00Break14:15Group discussions on Genomics platform organization and activities16:00Meeting ends

Application Open: Publishing workshop for junior researchers
2021-10-06 00:01 - 23:00 | Online event via Zoom
Applications are open to take part in this 3-part workshop series by Science and SciLifeLab for early career researchers (PhD students and postdocs) in SciLifeLab affiliated groups.

Workshop leaders:

Valda Vinson (Editor, Science Magazine)Sacha Vignieri (Deputy Editor for research, Science Magazine)

This series is limited to a maximum 30 participants. Participants will be selected after applications close, and selected participants will be notified shortly thereafter. The workshop is free of charge.

Registered participants must attend all three sessions of the workshop. The topics covered all relate to publishing, in particular: “Before you submit”, “Life of the paper”, and “the publishing landscape”.

Workshop 1 – Thursday, 4th of November, 16:00-17:30 CETWorkshop 2 – Thursday, 11th of November, 16:00-17:30 CETWorkshop 3 – Thursday, 18th of November, 16-17:30 CET

Deadline for application: October 6, 2021. Selected participants will be notified shortly thereafter.

apply here

Please note that this workshop series is only open to SciLifeLab affiliated groups.

Content

Before you submit

Life of the paper

The publishing landscape

Part A

Quick background Authorship Picking a journal Planning ahead

Part A

Cover Letter Title/Abstract Process at Science

Part A – Within Science

What happens after acceptance Promoting your paper

Part B

Structure your paper Dos and Don’ts Data presentation/visualization/statistics Data accessibility

Part B

Review process Writing a review Responding to reviews

Part B – More Broadly

Towards reproducibilityOpen access and preprintsMeasuring Impact

Each session will be 1 hour 25 minutes long with the following structure:

25 minute talk + 10 minute Q&A25 minute talk + 10 minute Q&A15 minute wrap up + general questions

All workshop sessions will take place virtually on the Zoom platform.

Raising our Voices - Vol. 3
2021-09-30 17:00 - 18:00 | Air&Fire, SciLifeLab Stockholm, Tomtebodavägen 23A, Solna, Sweden
On Volume 3 of our Raising our Voices events we will discuss the diversity on science that goes beyond the visible. Renuka Kudva (project coordinator at NGI, speaker) and Rebecca Howard (moderator) will discuss how to increase visibility of underrepresented identities in the SciLifeLab community and amplify the discussion on diversity, equality and inclusion topics.

please register here

Program

5 min – Welcome from DEI-SLL host: Alejandro 10 min – Personal narrative with slides: Renuka 15 min – Dialogue with prepared questions: Reba & Renuka25 min – Moderated audience questions: Reba & Renuka5 min – Thanks, contact reminders, upcoming announcements: Alejandro

Renuka Kudva, PhD

Project Coordinator, NGI

I’m currently a Project Coordinator at NGI after a research career in the wet lab during my PhD and postdoc. I’ll cover my inspiration to study biology, my experience navigating a research career as an immigrant scientist with an unseen disability, how impostor syndrome can sometimes be a good thing, and why I think science communication is closely intertwined with diversity, equity, and inclusion.

Host: Alejandro Rodríguez Gijón

Moderator: Rebecca Howard

Campus Solna Seminar Series: Florian Weber and Krzysztof Szkop
2021-09-30 13:00 - 14:00
Welcome to join the Campus Solna Seminar Series – an initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively), with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged.

The seminars are held Thursdays 13:00-13:50 and following current regulations, they will be broadcast via zoom.

This week

Lipoprotein particles are able to interact and alter lipid membranesFlorian Weber (Erdinc Sezgin, Gamma 3)

Stress-induced perturbations in intracellular amino acids reprogram mRNA translation in osmoadaptation independently of ISRKrzysztof Szkop (Ola Larsson, Gamma 5)

Registration

Register to receive the zoom-link. The same zoom link applies for all Campus Solna Seminar Series, i.e. only one registration is necessary.

Campus Solna Seminar Series: Jörg Bachmann and Charlotte Stadler
2021-09-23 13:00 - 14:00
Welcome to join the Campus Solna Seminar Series – an initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively), with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged.

The seminars are held Thursdays 13:00-13:50 and following current regulations, they will be broadcast via zoom.

This week

Circular chromatin confirmation capture – finding genes behind racing horse performance Jörg Bachmann (Pelin Sahlén, Alpha 3)

Spatial and single cell biology platform at Scilifelab – how can we help pushing your research forward?Charlotte Stadler, Alpha 2

Registration

Register to receive the zoom-link. The same zoom link applies for all Campus Solna Seminar Series, i.e. only one registration is necessary.

Campus Solna Seminar Series: August Jernbom Falk and Christian Sommerauer
2021-09-16 13:00 - 14:00
Welcome to join the Campus Solna Seminar Series – an initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively), with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged.

The seminars are held Thursdays 13:00-13:50 and following current regulations, they will be broadcast via zoom.

This week

Autoantibody profiles associated with clinical features in psychotic disordersAugust Jernbom Falk (Peter Nilsson, Alpha 2)

Are female sex hormones the key to preventing liver diseases?Christian Sommerauer (Claudia Kutter, Gamma 5)

Registration

Register to receive the zoom-link. The same zoom link applies for all Campus Solna Seminar Series, i.e. only one registration is necessary.

Campus Solna Seminar Series: Jaromir Mikes and Niklas Sandström
2021-09-09 13:00 - 14:00
Welcome to join the Campus Solna Seminar Series – an initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively), with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged.

The seminars are held Thursdays 13:00-13:50 and following current regulations, they will be broadcast via zoom.

This week

Minimizing technical variance by improved whole blood sampling protocol leads to better data and more interesting scienceJaromir Mikes (Petter Brodin, alpha 1)

Lab-on-chip for drug toxicology and cell cytotoxicity assaysNiklas Sandström (Björn Önfelt, gamma 3)

Registration

Register to receive the zoom-link. The same zoom link applies for all Campus Solna Seminar Series, i.e. only one registration is necessary.

Campus Solna Seminar Series: Banushree Kumar and Vivek Singh
2021-09-02 13:00 - 14:00
Welcome to join the Campus Solna Seminar Series – an initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively), with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged.

The seminars are held Thursdays 13:00-13:50 and following current regulations, they will be broadcast via zoom.

This week

Polycomb Repressive Complex 2 shields naive human pluripotent cells from trophectoderm differentiation. Banushree Kumar (Simon Elsässer, alpha 4)

Towards high-resolution structures of the human mitoribosomeVivek Singh (Alexey Amunts, gamma 6)

Registration

Register to receive the zoom-link. The same zoom link applies for all Campus Solna Seminar Series, i.e. only one registration is necessary.

Campus Solna Seminar Series: Woonghee Kim and Markus Hilscher
2021-06-17 13:00 - 14:00
Introducing the new Campus Solna Seminar Series – a new initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between the alpha and gamma buildings. The format will be 2 short 15 min talks (1 speaker from alpha and 1 from gamma), with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged.

The seminars are held Thursdays 13:00-13:50 and following current regulations, they will be broadcast via zoom.

Woonghee Kim

Drug discovery: Disease modeling and assessment of new small molecules for Non Alcoholic Fatty Liver Disease (NAFLD)

Adil Mardinoglu, Alpha 6

Markus Hilscher

Beyond a cell atlas – applications of in situ sequencing to models of disease

Mats Nilsson, Gamma 4

Register to receive the zoom-link. The same zoom link applies for all Campus Solna Seminar Series, i.e. only one registration is necessary.

Please select a valid form

Campus Solna Science talks 2021
2021-06-14 08:00 - 2021-06-16 17:00 | https://www.scilifelab.se/event/campus-solna-science-talks-2021/
SciLifeLab Campus Solna symposium is designed to inform the community about recent work, provide an opportunity for scientists to present ongoing research, and introduce new fellows.

To create an open environment that encourages the unrestrained sharing of ongoing research and unpublished work, the taking of screen shots, video or audio recording is not allowed during the presentations. Of course, taking written notes is fine.

For details please email science.talks@scilifelab.se

Register to Science Talks

Program

Program Science Talks 2021Download

Monday, June 14

09:00Opening note – Welcome to Science Talks, Per Ljungdahl, SciLifeLab Campus Solna DirectorBioimagingChair: Per Ljungdahl09:05Ilaria Testa (KTH), A new observable window into living cells at high spatio-temporal resolution09:15Taras Sych (KI), Biophysical characterization of nano-sized physiological lipid particles with fluorescence flucutuometry09:25Linnea Nordahl (KTH), Interactions within the Na/K-ATPase09:35Hans Blom (KTH), Diagnosis of kidney diseases with all scale optical microscopy09:45Q&A with speakers10:00BreakCellular and Molecular BiologyChair: Marcel Tarbier10:10Lucie Delemotte (KTH), Elucidation of G protein-coupled receptor activation via data-driven modeling10:20Alexey Amunts (SU), Structural studies of bioenergetic complexes10:30Fitz Gerald S. Silao (SU), Proline assimilation is intrinsic to the opportunistic ecophagy of Candida albicans-infected hosts10:40Paul Hudson (KTH), Engineering the microbial Calvin cycle for bio-sustainability applications10:50Q&A with speakers11:05BreakCellular and Molecular BiologyChair: Vicent Pelechano11:15Eleni Gelali (KI), Deconwolf: a free deconvolution software that can facilitate imaging-based spatially resolved omics11:25Lukas Käll (KTH), Survival Analysis Based on Cancers’ Pathway Activity11:35Maurice Grube (KI), Small molecule activation of OGG1 increases base excision repair by gaining a new enzymatic function11:45Banushree Kumar (KI), Function of PRC2 in naïve and primed human pluripotency11:55Q&A with speakers12:10End of day

Tuesday, June 15

Nucleic Acids and Multi-omicsChair: Alexey Amunts09:00Opening note09:05Stefania Giacomello (KTH), Understanding the impact of spaceflight on mouse brain and heart by using spatial multiomics methods09:15Marc Friedländer (SU), Ancient RNA – possibilities and challenges09:25Christian Sommerauer (KI), Are female sex hormones the key to preventing liver diseases?09:35Claudia Kutter (KI), High resolution RAPseq identifies functional propensities of RNA binding proteins in diseases and species evolution09:45Q&A with speakers10:00Break10:10Paula Pierozan (SU), re common per- and polyfluoroalkyl substances linked to breast cancer? -mechanistic studies by high-content screening and DNA methylation analysis10:20Kristoffer Sahlin (SU), Strobemers: an alternative to k-mers for sequence comparison, clustering, and alignment10:30Alisa Alekseenko (KI), OPUS-seq: One Pot Double Stranded UMI Sequencing10:40Lilit Nersisyan (KI), RNA degradation analysis reveals ribosome dynamics in complex microbiome samples10:50Q&A with speakers11:05BreakNucleic Acids and Multi-omicsChair: Vaishnovi Sekar11:15Cecilia Williams (KTH), Colorectal cancer development: sex differences and impact of estrogen11:25Erik Sonnhammer (SU), Network-based pathway analysis and drug repurposing, with application to COVID-1911:35Jean Hausser (KI), Quantitative principles of tumor micro-architecture11:45Boyang Guo (KTH), The perfect fit: enzyme and substrate conformations in plastic degradation11:55Q&A with speakers12:10End of day

Wednesday, June 16

Epidemiology and DiagnosticsChair: Lucie Rodriguez09:00Opening note09:05Petter Brodin (KI), Human systems immunology09:15Ludvig Larsson (KTH), Molecular characterization of the mouse intestine09:25Jochen Schwenk (KTH), Decoding clinical heterogenity with the circulating proteome09:35Tea Dodig-Crnkovic (KTH), Multiplexed analysis of the GPCR-RAMP interactome09:45Q&A with speakers10:00BreakEpidemiology and DiagnosticsChair: Aditi Shenoy10:10Peter Nilsson (KTH), Development of a multiplex COVID-19 serology10:20Mats Nilsson (SU), The single sell- and spatial biology platform10:30Isabelle Leo (KI), Using proteomics to guide translational study of biology and biomarkers in childhood ALL10:40Aman Russom (KTH), Life at the micro- and nanoscale: microfluidics for clinical applications10:50Q&A with speakers11:05BreakNew RecruitmentsChair: Disa Hammarlöf11:15Iskra Pollak Dorocic (SU), Deciphering the molecular, anatomical and functional diversity of neuromodulatory neurons11:25Anniina Vihervaara (KTH), Coordinating transcription at physically-linked genes and enhancers in stress and development11:35Saeed Shoaie (KTH), Global and temporal state of human microbiome11:45Tuuli Lappalainen (KTH), Functional variation in the human genome: lessons from the transcriptome11:55Q&A with speakers12:10Science communication AwardsOlli Kallioniemi, Director SciLifeLab12:15Closing noteOlli Kallioniemi, Director SciLifeLab

Campus Solna Seminar Series: Gabriele Girelli and Ximena Lopez
2021-06-10 13:00 - 14:00
Introducing the new Campus Solna Seminar Series – a new initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between the alpha and gamma buildings. The format will be 2 short 15 min talks (1 speaker from alpha and 1 from gamma), with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged.

The seminars are held Thursdays 13:00-13:50 and following current regulations, they will be broadcast via zoom.

Gabriele Girelli

GPSeq – controlled diffusion to study radiality

Magda Bienko – Alpha 4

Ximena Lopez

Chemoenzymatic degradation of PET plastic

Per-Olof Syrén – Gamma 5

Register to receive the zoom-link. The same zoom link applies for all Campus Solna Seminar Series, i.e. only one registration is necessary.

Please select a valid form

Campus Solna Seminar Series: Trang Le and Aswathy Kallazhi
2021-06-03 13:00 - 14:00
Introducing the new Campus Solna Seminar Series – a new initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between the alpha and gamma buildings. The format will be 2 short 15 min talks (1 speaker from alpha and 1 from gamma), with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged.

The seminars are held Thursdays 13:00-13:50 and following current regulations, they will be broadcast via zoom.

Trang Le

Modelling the spatial cell cycle with deep learning

Emma Lundberg – Alpha 2

Aswathy Kallazhi

Lon-mediated proteolysis in Pseudomonas aeruginosa pathogenicity

Kristina Jonas – Gamma 5

Register to receive the zoom-link. The same zoom link applies for all Campus Solna Seminar Series, i.e. only one registration is necessary.

Please select a valid form

Campus Solna Seminar Series: Saman Hosseini Ashtiani and Valentina Carannante
2021-05-27 13:00 - 14:00
Introducing the new Campus Solna Seminar Series – a new initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between the alpha and gamma buildings. The format will be 2 short 15 min talks (1 speaker from alpha and 1 from gamma), with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged.

The seminars are held Thursdays 13:00-13:50 and following current regulations, they will be broadcast via zoom.

Register to receive the zoom-link. The same zoom link applies for all Campus Solna Seminar Series, i.e. only one registration is necessary.

Saman Hosseini Ashtiani

Arne Elofsson – Alpha 6

Valentina Carannante

Björn Önfelt – Gamma 3

Please select a valid form

Campus Solna Seminar Series: Alma Andersson and Alexander Muhleip
2021-05-20 13:00 - 14:00
Introducing the new Campus Solna Seminar Series – a new initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between the alpha and gamma buildings. The format will be 2 short 15 min talks (1 speaker from alpha and 1 from gamma), with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged.

The seminars are held Thursdays 13:00-13:50 and following current regulations, they will be broadcast via zoom.

Alma Andersson

Exploring the cell type topography by integration of single cell and spatial transcriptomics data

Joakim Lundeberg – Alpha 3

Alexander Muhleip

The molecular basis for cristae maintenance in Toxoplasma mitochondria

Alexey Amunts – Gamma 3

Register to receive the zoom-link. The same zoom link applies for all Campus Solna Seminar Series, i.e. only one registration is necessary.

Please select a valid form

Campus Solna Seminar Series: Rui Shao and Yerma Pareja Sanchez
2021-05-12 13:00 - 14:00
Introducing the new Campus Solna Seminar Series – a new initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between the alpha and gamma buildings. The format will be 2 short 15 min talks (1 speaker from alpha and 1 from gamma), with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged.

The seminars are held Thursdays 13:00-13:50 and following current regulations, they will be broadcast via zoom.

Rui Shao

Estimating RNA transcription speed with multi-omics

Simon Elsässer Group – Alpha 4

Yerma Pareja Sanchez

Discovering new factors involved in transcriptional memory

Vincent Pelechano Group – Gamma 5

Register to receive the zoom-link. The same zoom link applies for all Campus Solna Seminar Series, i.e. only one registration is necessary.

Please select a valid form

Campus Solna Seminar Series: Meike Latz and Daniel Gyllborg
2021-05-06 13:00 - 14:00
Introducing the new Campus Solna Seminar Series – a new initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between the alpha and gamma buildings. The format will be 2 short 15 min talks (1 speaker from alpha and 1 from gamma), with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged.

The seminars are held Thursdays 13:00-13:50 and following current regulations, they will be broadcast via zoom.

Vesna Grujcic

Combined imaging and single cell transcriptomics of eukaryotic plankton

Anders Andersson – Alpha 3

Daniel Gyllborg

Applications and advancements of in situ sequencing for cell atlas projects

Mats Nilsson – Gamma 4

Register to receive the zoom-link. The same zoom link applies for all Campus Solna Seminar Series, i.e. only one registration is necessary.

Please select a valid form
