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DTSTART;TZID=Europe/Stockholm:20240212T090000
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DTSTAMP:20260406T232626
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UID:10001025-1707728400-1708102800@www.scilifelab.se
SUMMARY:Single Cell RNA-Seq Data Analyses Workshop
DESCRIPTION:This workshop will introduce the best practice bioinformatics methods for analysing single cell RNA-seq data via a series of lectures and computer practicals. The total course duration is 5 days which includes 4 days of lectures and exercises followed by a “Bring Your Own Data” day where you get to practice your skills on a dataset of your choosing. \n\n\n\n\n\n\n\nThe course is organized by: National Bioinformatics Infrastructure Sweden (NBIS) \n\n\n\nResponsible teachers: Åsa Björklund\, Susanne Reinsbach\, Roy Francis \n\n\n\nContact information: edu.sc@nbis.se    \n\n\n\n\n\n\n\nImportant dates\n\n\n\nApplication open: 13 Nov 2023 \n\n\n\nApplication closes: 17 Jan 2024 \n\n\n\nConfirmation to accepted participants: Weeks 3-4\, 2024 \n\n\n\n\n\n\n\n\n\nApplication\n\n\n\n\n\nCourse website\n\n\n\n\n\n\n\n\n\nCourse fee\n\n\n\nThis on-site training event costs 3000 SEK for academic participants\, invoiced to the participant’s organisation. If you accept a position and do not participate (no-show) you will still be invoiced 3000 SEK. Please note that NBIS cannot invoice individuals. We ask non-academic applicants to contact us regarding the fee.  \n\n\n\n\n\n\n\nCourse content\n\n\n\n\nOverview of the current scRNAseq technologies\n\n\n\nBasic overview of pipelines for processing raw reads into expression values\n\n\n\nQuality control and normalization\n\n\n\nDimensionality reduction techniques\n\n\n\nData integration and batch correction\n\n\n\nDifferential gene expression\n\n\n\nClustering techniques\n\n\n\nCelltype prediction\n\n\n\nTrajectory inference analysis\n\n\n\nComparison of analysis toolkits: Seurat\, Scran and Scanpy\n\n\n\n\n\n\n\n\nEntry requirements\n\n\n\n\nYou are used to program in either R and/or Python\n\n\n\nYou already understand the basis of NGS technologies\n\n\n\nYou are able to analyse bulk RNA-sequencing data\n\n\n\nYou are used to navigate and use UNIX command line (bash)\n\n\n\nHave full access to your computer (admin permissions). Instructions on installation will be sent by email to accepted participants.\n\n\n\n\n\n\n\n\nSelection criteria\n\n\n\nDue to limited space\, the course accommodates a maximum of 25 participants. If we receive more applications\, participants will be selected based on selection criteria such as correct entry requirements\, motivation to attend the course as well as gender and geographical balance.
URL:https://www.scilifelab.se/event/single-cell-rna-seq-data-analyses-workshop/
LOCATION:Navet\, SciLifeLab Uppsala\, SciLifeLab Uppsala\, BMC C11\, Husargatan 3\, Uppsala\, 75237\, Sweden
CATEGORIES:Course
ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se
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DTSTART;TZID=Europe/Stockholm:20240214T120000
DTEND;TZID=Europe/Stockholm:20240215T140000
DTSTAMP:20260406T232626
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SUMMARY:Epigenetics Workshop
DESCRIPTION:Join us for our free Epigenetics workshop\, where we will delve into pressing questions about epigenetic information\, with a focus on DNA methylation. This translational technology is gaining ground in clinical practice\, but there is room for improvement in Sweden. From methylation sequencing panels to bioinformatic analysis\, we will explore it all. Long-read sequencing platforms also hold promise for future clinical applications. \n\n\n\nDon’t miss out on interactive discussions and expert presentations\, all for free!  \n\n\n\nRegistration\n\n\n\nLooking forward to your participation!
URL:https://www.scilifelab.se/event/epigenetics-workshop/
LOCATION:Birgittasalen\, Hus 240\, Hälsovägen\, US\, Linköping
CATEGORIES:Course
ORGANIZER;CN="Clinical Genomics Link%C3%B6ping":MAILTO:tobias.strid@liu.se
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DTSTART;TZID=Europe/Stockholm:20240220T080000
DTEND;TZID=Europe/Stockholm:20240222T170000
DTSTAMP:20260406T232626
CREATED:20231215T082629Z
LAST-MODIFIED:20231215T082631Z
UID:10001070-1708416000-1708621200@www.scilifelab.se
SUMMARY:Basic Course in Scanning and Transmission Electron Microscopy for Life Sciences
DESCRIPTION:This course covers lectures and practical demonstrations in SEM and TEM techniques\, specifically for life science applications. The contents include principles of electron microscopy\, specimen preparation\, cryo-electron microscopy and correlative light-electron microscopy. For electron microscopy in physical science applications\, there will be a similar-content basic course organised later. \n\n\n\nRead more and register\n\n\n\nApplication deadline: The registration closes on 26 January 2024. \n\n\n\nLocation: Lectures at KBC Building and laboratory demonstrations at UCEM facility\, Umeå University \n\n\n\nParticipants: 18 persons \n\n\n\nInstructors: UCEM staff \n\n\n\nDuration: 3 days \n\n\n\nBreaks/Refreshments: Coffee\, cookies and fruit. \n\n\n\nCosts: No course fee\, but full attendance is required! \n\n\n\nExamination/Credits: Oral and practical examinations are conducted during laboratory demonstrations. A course certificate will be given after participants attend all lectures and laboratory demonstrations for this 3-day course. UCEM recommends PhD program examiners to give 1 ECTS after successful participation.
URL:https://www.scilifelab.se/event/basic-course-in-scanning-and-transmission-electron-microscopy-for-life-sciences-2/
LOCATION:KBC Building Umeå\, Linneaus Väg 6\, Umeå
CATEGORIES:Course
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ORGANIZER;CN="SciLifeLab Ume%C3%A5":MAILTO:umea@scilifelab.se
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