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DTSTART;TZID=Europe/Stockholm:20240827T120000
DTEND;TZID=Europe/Stockholm:20241001T120000
DTSTAMP:20260407T011518
CREATED:20240615T115304Z
LAST-MODIFIED:20240615T115305Z
UID:10001278-1724760000-1727784000@www.scilifelab.se
SUMMARY:Data-Driven Life Sciences Course 2024 (Online)
DESCRIPTION:Welcome to the Data-driven Life Sciences 2024 course\, where you will explore the intersection of data science\, artificial intelligence\, and life sciences to drive innovation and discovery. This fully online course culminates in an in-person hackathon\, fostering a vibrant community that gathers the DDLS and SciLifeLab members. \n\n\n\nThe 6 modules aim to introduce learners to computer-driven life sciences\, covering application areas in data-driven life sciences. Guest lecturers (DDLS Fellows\, SciLifeLab fellows\, and SciLifeLab facility training providers) will teach topics including technologies and analysis of data sets from proteomics\, transcriptomics\, biomolecular structure\, molecular dynamics simulations\, and various imaging techniques. These modules present\, analyze\, and discuss models of biological phenomena and related scientific breakthroughs based on such data analysis. \n\n\n\nRegistration\n\n\n\nAs prerequisites for the course\, we recommend that you have a look at the following resources: \n\n\n\n\nPlease have a look at the SciLifeLab Data-Driven Life Science (DDLS) initiative website to understand what data-driven life sciences are\, and how Sweden is investing in this area. Focus in particular on the concept of the data life cycle\, which is central in this class.\n\n\n\nWe will use Python as the main programming language in the computer lab\, so please make sure you know the basics of Python. \n\n\n\n\nFor the computer lab\, you will need a computer with internet access\, and make sure you have the following set up: \n\n\n\n\nInstall the latest browser\, e.g. Chrome\n\n\n\nRegister a Google account for the Google Colab access and use the Google Drive\n\n\n\nRegister a ChatGPT account (Note: No need to subscribe to the paid version of ChatGPT\, using the free version is sufficient for this course)\n\n\n\nRegister a Github account for versioning of the code\n\n\n\n\nLearning objectives:  \n\n\n\n\nDescribe the field of data-driven life sciences\n\n\n\nPresent an overview of various application areas\n\n\n\nProvide examples of applications and their associated analysis methods\n\n\n\nApply statistical and machine learning analysis to biological data sets\n\n\n\nFormulate models of biological phenomena\n\n\n\nPresent and review scientific literature in computer-driven life sciences\n\n\n\nReflect on the ethical consequences of data-driven life sciences\n\n\n\nPractice good data management\, including collection\, handling\, sharing\, and analysis\n\n\n\n\nFor questions\, contact the course leader Wei Ouyang at weio@kth.se
URL:https://www.scilifelab.se/event/data-driven-life-sciences-course-2024-online/
LOCATION:Online event via Zoom
CATEGORIES:Course
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20240902T080000
DTEND;TZID=Europe/Stockholm:20240913T170000
DTSTAMP:20260407T011518
CREATED:20240402T105825Z
LAST-MODIFIED:20240604T091422Z
UID:10001222-1725264000-1726246800@www.scilifelab.se
SUMMARY:Integrated Structural Biology course 2024
DESCRIPTION:Welcome to the Integrated Structural Biology course\, 2nd edition \n\n\n\nOrganized by SciLifeLab in collaboration with PPS (Protein Production Sweden)\, ESS (European Spallation Source)\, MAX IV\, ProLinC\, NSC (National Supercomputer Centre)\, SwedNMR and InfraLife. \n\n\n\nSeptember 2-13 in Stockholm\, Linköping\, Lund and Gothenburg \n\n\n\nQuestions regarding the course? Send them to: cecilia.persson@nmr.gu.se. \n\n\n\napply here!\n\n\n\nThis course guides you through the different available techniques within structural biology at infrastructures in Sweden. We will also guide all participants through Sweden\, showcasing several of the infrastructures. In short\, the following techniques will be addressed: \n\n\n\n\nCryo-EM\n\n\n\nNMR\n\n\n\nStructural proteomics\n\n\n\nCrystallography\n\n\n\nSAXS/SANS\n\n\n\nBiophysical characterization\n\n\n\nComputational aspects including AlphaFold\n\n\n\nProtein production\n\n\n\nStudent presentations\n\n\n\nSite visits\n\n\n\n\nThe course will start with 4 days in Stockholm and then finish the first week in Linköping. Second week starts in Lund and finishes with two days in Gothenburg. \n\n\n\nYou can download the course overview here: \n\n\n\n Preliminary schedule pdf. \n\n\n\nThere is a course fee for academic participants of 6000 SEK that includes lodging (4 nights each week)\, meals all days and travel between sites. Industry and healthcare participants are welcome for full or specific day participation. Contact Cecilia for more information about costs depending on degree of participation. Industry also welcome to sponsor part of the event and get exposure and networking possibility. \n\n\n\nTravels between sites will be organized for all as well as lodging and lunch/fika. Participants are asked to arrange their own travels to Stockholm on September 2 (arrival latest at 10)\, from Linköping on September 6\, travel to Lund (arrival September 9 before lunch) and then again final travel home on September 13. \n\n\n\nImportant dates\n\n\n\nThere are still some places left in the course and we have prolonged the last application date so you can apply until June 20\, and we will let you know shortly after if you have secured a place in the course \n\n\n\n \n\n\n\nTeachers\n\n\n\n\nMartin Moche\n\n\n\nTomas Nyman\n\n\n\nEsko Oksanen\n\n\n\nTim Schulte\n\n\n\nMichael Hall\n\n\n\nHanna Barriga\n\n\n\nDean Derbyshire\n\n\n\nMaria Sunnerhagen\n\n\n\nSimon Ekström\n\n\n\nLotta Happonen\n\n\n\nCaludio Mirabello\n\n\n\nWojciech Potrzebowski
URL:https://www.scilifelab.se/event/integrated-structural-biology-course-2024/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Course
ORGANIZER;CN="Integrated Structural Biology Platform at SciLifeLab":MAILTO:cecilia.persson@nmr.gu.se
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BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20240916T080000
DTEND;TZID=Europe/Stockholm:20240920T170000
DTSTAMP:20260407T011518
CREATED:20240426T103029Z
LAST-MODIFIED:20240426T103031Z
UID:10001243-1726473600-1726851600@www.scilifelab.se
SUMMARY:Epigenomics Data Analysis: from Bulk to Single Cell – ONLINE
DESCRIPTION:National course open for PhD students\, postdocs\, researchers and other employees in all Swedish universities\, in need of  Epigenomics data analysis skills. We also welcome applications from outside of Sweden and from the non-academic sector\, for more info contact us! \n\n\n\nImportant dates and information\n\n\n\nApplication opens: 2024-04-26 \n\n\n\nApplication closes: 2024-08-28 \n\n\n\nConfirmation to accepted students: 2024-08-30 \n\n\n\nCourse Leaders : Agata Smialowska and Louella Vasquez \n\n\n\nContact information:  edu.epigenomics@nbis.se \n\n\n\nCourse fee\n\n\n\nThis online training event has no fee for academic participants. However\, if you accept a position at the workshop and do not participate (no-show) you will be invoiced 2 000 SEK. For non-academic participants a course fee* of 12 000 SEK  will be invoiced. \n\n\n\n*Please note that NBIS cannot invoice individuals \n\n\n\nCourse content\n\n\n\nThis workshop aims to introduce the best practice bioinformatics methods for processing\, analyses\, visualisation and integration of epigenomics and functional genomics data. \n\n\n\nTopics covered include: \n\n\n\n\nData processing and analyses for differential DNA methylation with Illumina EPIC arrays and Bisulfite-seq;\n\n\n\nChIP-seq: peak calling\, peak independent / dependent quality metrics\, differential binding analysis; DNA motif enrichment;\n\n\n\nATAC-seq: peak calling\, peak independent / dependent quality metrics\, differential accessibility analysis;\n\n\n\nQuantitative ChIP-seq using spike-ins;\n\n\n\nCUT&Tag / CUT&RUN: Novel methods to investigate protein-chromatin interactions;\n\n\n\nFunctional analysis\, including finding nearest genes and custom features\, GO terms and Reactome pathways enrichment;\n\n\n\nBasic multi-omics exploration and integration;\n\n\n\nVisualisations of epigenomics datasets;\n\n\n\nIntroduction to analysis of single cell functional genomics data (scATAC-seq);\n\n\n\nIntroduction to nf-core pipelines for processing and analysis of epi- and functional genomics data : Methylseq\, ChIP-seq\, ATAC-seq.\n\n\n\n\nEntry requirements\n\n\n\nRequired for being able to follow the workshop and complete the computer exercises: \n\n\n\n\nBYOL\, bring your own laptop with R and RStudio installed;\n\n\n\nBasic knowledge in Linux;\n\n\n\nBasic programming experience\, preferably in R.\n\n\n\n\nDesirable: \n\n\n\n\nExperience working on the SNIC center Uppmax or another HPC. We encourage participants to run the linked Uppmax tutorial before the workshop;\n\n\n\nPrevious experience with NGS data analyses;\n\n\n\nCompleting NBIS workshops “Introduction to Bioinformatics using NGS data” and “R Foundations for Life Scientists” or equivalent.\n\n\n\n\nDue to limited space the course can accommodate a maximum of 25 participants. If we receive more applications\, participants will be selected based on selection criteria\, including (but not limited to) correct entry requirements\, motivation to attend the course\, as well as gender and geographical balance. \n\n\n\nLink to application\n\n\n\nhttps://forms.gle/BbmWmLwZFS1ed8EeA
URL:https://www.scilifelab.se/event/epigenomics-data-analysis-from-bulk-to-single-cell-online-4/
LOCATION:Online event via Zoom
CATEGORIES:Course
ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20240918T080000
DTEND;TZID=Europe/Stockholm:20240919T170000
DTSTAMP:20260407T011518
CREATED:20240411T132838Z
LAST-MODIFIED:20240603T163446Z
UID:10001229-1726646400-1726765200@www.scilifelab.se
SUMMARY:Training Material made FAIR by Design
DESCRIPTION:This 2 day course is based on the FAIR training handbook and 10 simple rules to make material FAIR publication. All sessions are structured in a way that complement each other aiming to introduce participants with a theoretical & hands-on approach of how to design FAIR training material. \n\n\n\nPlease see the course website\, which will be updated regularly\, for more information \n\n\n\n \n\n\n\nTopics covered will include:\n\n\n\n\nFAIR vs OPEN training material\n\n\n\nTraining material documentation and reproducibility \n\n\n\n(ontology\, Learning Outcomes\,etc)\n\n\n\nIllustrations\, keeping it FAIR\n\n\n\nE-learning and videos\, challenges and solutions to keep it FAIR\n\n\n\nUnique identifiers and version control\n\n\n\n\nActivities are intended to increase the technical skills and critical thinking during the development of a new training course. From A to Z participants are going to be challenged to work in a group to build a FAIR lesson on a topic to be presented at the end of the course. Come inspired! \n\n\n\nImportant Dates\n\n\n\nApplication open: 11-April-2024Application closes: 23-August-2024 \n\n\n\nConfirmation to applicants 30-August-2024 \n\n\n\nRegistration\n\n\n\nCourse website\n\n\n\nNote: The course is highly interactive and hence it is important that you\, as a participant\, actively contribute to all sessions and elements of the course.  \n\n\n\nParticipants need to bring a laptop.There are no fees for this course. \n\n\n\nAll are welcome! Particularly interesting for trainers and instructors that design-develop-deliver short-format training. \n\n\n\nLearning Objectives\n\n\n\nUpon completion of this course\, you will be able to: \n\n\n\n\ncreate FAIR and open training material from the start\n\n\n\napply FAIR principles to all elements of training material\n\n\n\nuse AI tools in content creation of FAIR training material\n\n\n\n\nPrerequisites\n\n\n\nThe following is a list of skills required for being able to follow the course and complete the exercises: \n\n\n\n\nBe familiar with GitHub If not\, we advise you to have a look at the GitHub Skills pages and/or Github courses in Glittr.org in order to acquire the following:\n\nBasic knowledge: To be able to make commits\, create branches and issues\, make pull requests.\n\n\n\n\n\nDesirable\, but not essential skills increasing the output of the course include:\n\nPre-reading the FAIR Training Handbook\n\n\n\nPre-reading 10 simple rules to make material FAIR publication
URL:https://www.scilifelab.se/event/fair-training-material-by-design/
LOCATION:Navet\, SciLifeLab Uppsala\, SciLifeLab Uppsala\, BMC C11\, Husargatan 3\, Uppsala\, 75237\, Sweden
CATEGORIES:Course
ORGANIZER;CN="SciLifeLab Training Hub%2C NBIS%2C and VIB":MAILTO:traininghub@scilifelab.se
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