BEGIN:VCALENDAR
VERSION:2.0
PRODID:-//SciLifeLab - ECPv6.15.20//NONSGML v1.0//EN
CALSCALE:GREGORIAN
METHOD:PUBLISH
X-WR-CALNAME:SciLifeLab
X-ORIGINAL-URL:https://www.scilifelab.se
X-WR-CALDESC:Events for SciLifeLab
REFRESH-INTERVAL;VALUE=DURATION:PT1H
X-Robots-Tag:noindex
X-PUBLISHED-TTL:PT1H
BEGIN:VTIMEZONE
TZID:Europe/Stockholm
BEGIN:DAYLIGHT
TZOFFSETFROM:+0100
TZOFFSETTO:+0200
TZNAME:CEST
DTSTART:20240331T010000
END:DAYLIGHT
BEGIN:STANDARD
TZOFFSETFROM:+0200
TZOFFSETTO:+0100
TZNAME:CET
DTSTART:20241027T010000
END:STANDARD
BEGIN:DAYLIGHT
TZOFFSETFROM:+0100
TZOFFSETTO:+0200
TZNAME:CEST
DTSTART:20250330T010000
END:DAYLIGHT
BEGIN:STANDARD
TZOFFSETFROM:+0200
TZOFFSETTO:+0100
TZNAME:CET
DTSTART:20251026T010000
END:STANDARD
BEGIN:DAYLIGHT
TZOFFSETFROM:+0100
TZOFFSETTO:+0200
TZNAME:CEST
DTSTART:20260329T010000
END:DAYLIGHT
BEGIN:STANDARD
TZOFFSETFROM:+0200
TZOFFSETTO:+0100
TZNAME:CET
DTSTART:20261025T010000
END:STANDARD
BEGIN:DAYLIGHT
TZOFFSETFROM:+0100
TZOFFSETTO:+0200
TZNAME:CEST
DTSTART:20270328T010000
END:DAYLIGHT
BEGIN:STANDARD
TZOFFSETFROM:+0200
TZOFFSETTO:+0100
TZNAME:CET
DTSTART:20271031T010000
END:STANDARD
END:VTIMEZONE
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20250915T080000
DTEND;TZID=Europe/Stockholm:20250919T170000
DTSTAMP:20260416T053156
CREATED:20250109T105219Z
LAST-MODIFIED:20250109T144332Z
UID:10001448-1757923200-1758301200@www.scilifelab.se
SUMMARY:Population Genomics in Practice
DESCRIPTION:The “Population Genomics in Practice” course is open for PhD students\, postdocs\, researchers\, and other employees in Swedish universities\, who need hands-on and practical skills to analyze population genomics data. We also welcome applications from outside of Sweden and from the non-academic sector\, for more info contact us! \n\n\n\nImportant dates and information\n\n\n\nApplication opens: 2025-01-13 \n\n\n\nApplication closes: 2025-05-15 \n\n\n\nConfirmation to accepted students: 2025-06-15 \n\n\n\nCourse Leader and teachers: Per Unneberg (CL)\, André E.R. Soares (CL)\, Nikolay Oskolkov\, Jason Hill \n\n\n\nIn case you miss information on any of the above dates\, please contact: edu.population-genomics-in-practice@nbis.se \n\n\n\nCourse fee\n\n\n\nA course fee* of 3000 SEK for academic participants and 15000 SEK for non-academic participants will be invoiced to accepted participants. The fee includes lunches\, coffee and snacks. \n\n\n\n*Please note that NBIS cannot invoice individuals \n\n\n\nRegister here\n\n\n\nCourse content\n\n\n\nThis workshop aims to provide an introduction to commonly used methods in population genomics. As the focus of the course is on hands-on work\, the topics have been designed to cover the fundamental analyses that are common in many population genomics studies. The course consists of lectures and exercises\, with a focus on the practical aspects of analyses. Whereas lectures introduce some background theory\, their primary aim is to set the stage for accompanying exercises. \n\n\n\nTopics covered will include: \n\n\n\n\nFoundations of population genetics\n\n\n\nIntroduction to simulation and the coalescent\n\n\n\nBasics of variant calling\n\n\n\nVariant filtering and sequence masks\n\n\n\nCharacterization and interpretation of DNA sequence variation\n\n\n\nCalculation and interpretation of summary statistics from variation data\n\n\n\nInvestigating population structure with admixture modeling and principal component analyses\n\n\n\nDemographic modeling using sequentially Markovian coalescent models and linkage disequilibrium\n\n\n\nSelection scans\n\n\n\n\nLearning Outcomes\n\n\n\nUpon completion of this course\, you will be able to: \n\n\n\n\nDescribe the different forces of evolution and how they influence genetic variation\n\n\n\nUnderstand and interpret genealogical trees and how they relate to genetic variation data\n\n\n\nDescribe the basics of the coalescent\,\n\n\n\nPerform simple coalescent simulations with msprime\n\n\n\nRun simple SLiM forward simulation models\n\n\n\nDescribe and run the steps of a variant calling pipeline\, including quality control of raw reads\, read mapping\, and variant calling\n\n\n\nKnow how and when to filter raw variant calls using manual coverage filters\n\n\n\nDescribe and calculate nucleotide diversity from variation data\n\n\n\nAnalyze population structure with admixture modeling and dimensionality reduction methods\n\n\n\nPerform demographic modeling with sequential Markovian coalescent models\n\n\n\nDescribe methods that identify regions undergoing adaptation and selection\n\n\n\nRun selection scans\, score identified regions\, and interpret findings in the context of genome annotations\n\n\n\n\nThe latest information about the course can be found on \n\n\n\nhttps://uppsala.instructure.com/courses/105981 \n\n\n\nEntry requirements\n\n\n\nThe following is a list of skills required to be able to follow the course and complete the exercises: \n\n\n\n\nBasic knowledge of R or Python\n\n\n\nBasic knowledge of variant calling\, or the equivalent of the NBIS course “Introduction to Bioinformatics using NGS data”\n\n\n\nBasic knowledge of population genetics\n\n\n\nBasic understanding of frequentist statistics\n\n\n\nA computer\n\n\n\n\nDesirable\, but not essential\, skills increasing the output of the course\, include: \n\n\n\n\nExperience with analysis of NGS and other –omics data\n\n\n\n\nDue to limited space\, the course can accommodate a maximum of 25 participants. If we receive more applications\, participants will be selected based on selection criteria\, including (but not limited to) correct entry requirements\, motivation to attend the course\, as well as gender and geographical balance.
URL:https://www.scilifelab.se/event/population-genomics-in-practice-3/
LOCATION:BMC Trippelrummet\, Husargatan 3\, entrance C11\, Uppsala\, Sweden
CATEGORIES:Course
ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20260817T080000
DTEND;TZID=Europe/Stockholm:20260828T170000
DTSTAMP:20260416T053156
CREATED:20260408T064712Z
LAST-MODIFIED:20260408T065111Z
UID:10001798-1786953600-1787936400@www.scilifelab.se
SUMMARY:Integrated Structural Biology course\, 3rd edition
DESCRIPTION:Save the dates! Registration details will be shared soon. \n\n\n\nWelcome to the 3rd edition of the Integrated Structural Biology course\, organized by SciLifeLab and NordStruct. The course will take place over two weeks across Stockholm\, Linköping\, Lund\, and Gothenburg. \n\n\n\n\n\n\n\nDuring the course\, you will be introduced to a wide range of structural biology techniques available at research infrastructures in Sweden. The program combines lectures\, site visits\, and hands-on discussions\, offering opportunities for in-depth learning\, networking\, and project-specific discussions with experts. \n\n\n\nIn addition to the scientific program\, the course includes social activities such as dinners and informal gatherings\, providing further opportunities to connect with fellow participants and instructors. \n\n\n\nThe course will cover: \n\n\n\n\nCryo-EM\n\n\n\nNMR\n\n\n\nStructural proteomics\n\n\n\nCrystallography\n\n\n\nSAXS/SANS\n\n\n\nBiophysical characterization\n\n\n\nComputational aspects\, including AlphaFold\n\n\n\nProtein production\n\n\n\n\nThe program also includes student presentations and visits to key research infrastructures. \n\n\n\nPractical details\n\n\n\nThe course begins with three days in Stockholm\, followed by two days in Linköping to complete the first week. The second week starts in Lund and concludes with two days in Gothenburg. \n\n\n\nThe course fee is 7\,000 SEK and includes accommodation (four nights per week)\, lunches\, coffee breaks (fika)\, and organized travel between sites. Accommodation and local logistics will be arranged by the organizers. \n\n\n\nParticipants are expected to arrange their own travel to and from the course locations as follows: \n\n\n\n\nArrival in Stockholm on August 17 (no later than 10:00)\n\n\n\nDeparture from Linköping on August 21\n\n\n\nArrival in Lund on August 24 (before approximately 10:00–11:00)\n\n\n\nFinal departure from Gothenburg on August 28\n\n\n\n\nSchedule in short\n\n\n\n\n\nAugust 17  \n\n\n\n\n\nArrival in Stockholm\, set up computersProtein production and crystallography lectures \n\n\n\n\n\n\n\nAugust 18 \n\n\n\n\n\nCrystallography in practice (wet lab and computer) \n\n\n\n\n\n\n\nAugust 19 \n\n\n\n\n\nCryo-EM\, lecture and practicalTravel to Linköping \n\n\n\n\n\n\n\nAugust 20 \n\n\n\n\n\nAlphaFold and AI in structural biology \n\n\n\n\n\n\n\nAugust 21 \n\n\n\n\n\nBiophysical characterization \n\n\n\n\n\n\n\nAugust 24 \n\n\n\n\n\nArrival in LundGuest lecture and molecular Dynamicssite visit MAX IV and ESS \n\n\n\n\n\n\n\nAugust 25 \n\n\n\n\n\nSAXS/SANS lecture & practical \n\n\n\n\n\n\n\nAugust 26 \n\n\n\n\n\nStructural ProteomicsTravel to Gothenburg \n\n\n\n\n\n\n\nAugust 27 \n\n\n\n\n\nNMR \n\n\n\n\n\n\n\nAugust 28 \n\n\n\n\n\nIntegration of structural biology dataWrap-up\, good bye and travel home
URL:https://www.scilifelab.se/event/integrated-structural-biology-course-3rd-edition/
LOCATION:Stockholm\, Linköping\, Lund and Gothenburg
CATEGORIES:Course
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2026/04/ISB2026_1.png
END:VEVENT
END:VCALENDAR