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X-WR-CALDESC:Events for SciLifeLab
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TZID:Europe/Stockholm
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BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220224T132500
DTEND;TZID=Europe/Stockholm:20220225T150000
DTSTAMP:20260404T161243
CREATED:20220216T093937Z
LAST-MODIFIED:20220222T154735Z
UID:10000529-1645709100-1645801200@www.scilifelab.se
SUMMARY:DDLS Fellow positions at Stockholm University
DESCRIPTION:Welcome to attend the open\, on-line presentations given as part of the recruitment process for the two Tenure-Track positions as Assistant Professors in Data-Driven Cell and Molecular Biology at Stockholm University\, 24 February\, 13.25–15.20 och 25 February\, 13.25–15.00. \n\n\n\nFull program and zoom link HERE \n\n\n\n\n\n\n\n\n\n\n\nProgramme\n\n\n\nFebruary 24\n\n\n\n13.25–13.40    Jonathan Desponds Inference and prediction of transcription dynamics: application to the developmental pathways and the selection of T-cells \n\n\n\n13.45–14.00    Fabian Froehlich Mechanistic Models for Data-Driven Drug Sensitivity Prediction \n\n\n\n14.05–14.20    Juliette Griffie Characterising cellular processes at the nanoscale: beyond the pretty picture \n\n\n\n14.25–14.40    Jakub Wiktor Live cell microscopy reveals homology search mechanism  \n\n\n\n14.45–15.00    Michael Ratz Next-generation lineage tracing of brain development \n\n\n\n15.05–15.20    Severin SchinkTowards a quantitative understanding of ageing in cellular model systems \n\n\n\nFebruary 25\n\n\n\n13.25–13.40    Kimberly Siletti Molecular architecture of the mammalian brain    \n\n\n\n13.45–14.00    Linas Urnavicius Multidisciplinary study of molecular mechanisms governing cellular organization \n\n\n\n14.05–14.20    Axel OlinBlood-Based Assays for Human Systems Immunology \n\n\n\n14.25–14.40    Cheng ZhangSystems biology in liver disease \n\n\n\n14.45–15.00    Sofie Ährlund-Richter The ins and outs of the Prefrontal Cortex – Large-scale connectivity mapping and functional imaging of the Prefrontal Cortex \n\n\n\nChairing the presentations and the recruitment process is Professor Catarina Rydin. Acting as external reviewers for the recruitment are Professors Dagmar Iber\, Janet Thornton and Andreas Tolias. 
URL:https://www.scilifelab.se/event/ddls-fellow-position-at-stockholm-university/
LOCATION:Online event via Zoom
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/02/image-6.png
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220224T150000
DTEND;TZID=Europe/Stockholm:20220224T160000
DTSTAMP:20260404T161243
CREATED:20220210T162445Z
LAST-MODIFIED:20220215T171729Z
UID:10000525-1645714800-1645718400@www.scilifelab.se
SUMMARY:FAIRPoints Presents- Step by step publishing with ResearchEquals
DESCRIPTION:Chris Hartgerink\n\n\n\nSpeakers bio.  \n\n\n\nFAIRPoints is an event series highlighting pragmatic measures developed by the community towards the implementation of the FAIR (Findable\, Accessible\, Interoperable\, Reusable) data principles\, in collaboration with GoFAIR US\, SDSC\, AGU\, and SciLifeLab Data Centre.  \n\n\n\nIn this talk\, we will explore the open source publishing platform ResearchEquals\, where you can publish your entire research journey\, step by step. With this\, researchers get the autonomy to make all their research outputs findable\, accessible\, interoperable\, and reusable. In this presentation\, Chris Hartgerink shows how you can get started with this new publishing system and how you can help shape its future development.  \n\n\n\n\n\nSee Event in your Time Zone  \n\n\n\n\n\nLocation: Online via Zoom \n\n\n\n\n\n \n\n\n\n\n\n\n\nRegister Here\n\n\n\n\n\nSign up for future events here \n\n\n\n\n\n\nTweets by FAIR_Points
URL:https://www.scilifelab.se/event/fairpoints-researchequals/
LOCATION:Online event via Zoom
CATEGORIES:Event
ORGANIZER;CN="SciLifeLab Data Centre":MAILTO:datacentre@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220301T090000
DTEND;TZID=Europe/Stockholm:20220301T120000
DTSTAMP:20260404T161243
CREATED:20220121T155935Z
LAST-MODIFIED:20220121T155936Z
UID:10000512-1646125200-1646136000@www.scilifelab.se
SUMMARY:BioImage Analysis support - Call4Help
DESCRIPTION:Every 1st week of the month (mainly on Tuesdays\, but there might be exceptions) the BioImage Informatics Facility together with microscopy expert Sylvie Le Guyader (LCI\, Karolinska Institutet) organizes a Call4Help session. The aim is to offer combined expertise towards microscopy and bioimage analysis. All researchers from Swedish institutes can participate. \n\n\n\nThe ideal timepoint to join the Call4Help session is when a researcher has performed pilot experiments and has tried out first analysis approaches – but before having recorded hundreds of images. Combining BIIF’s expertise in BioImage Analysis with microscopy expertise we can discuss ways to record the images that allow analysis afterwards. We will discuss different analysis approaches using mainly open-source software (Fiji\, CellProfiler\, QuPath\, Ilastik\, KNIME)\, but also commercial systems\, if needed (Imaris). \n\n\n\nThe Call4Help session format has been introduced to the BioImage Analysis community by NEUBIAS and ScopeM. \n\n\n\nHow to participate? \n\n\n\nStep1: \n\n\n\nPrepare a short presentation (5-7 min)  – use the following template for your presentation: \n\n\n\nhttp://bit.ly/BIIF_C4H_slideTemplate \n\n\n\nSlide template by NEUBIAS/ScopeM \n\n\n\nStep2: \n\n\n\na) Upload your presentation \n\n\n\nUpload your presentation to a drive of your choice. You can also use our Call4Help google drive. Note that files shared on our Call4Help drive will be available to everyone until the session is over. \n\n\n\nhttp://bit.ly/BIIF_C4H_Drive \n\n\n\nb) Upload example images for testing. \n\n\n\nUpload example images for testing either to the drive of your choice or our Call4Help google drive above. \n\n\n\nhttp://bit.ly/BIIF_C4H_Drive \n\n\n\nc) Register by filling out the registration form: \n\n\n\nhttp://bit.ly/BIIF_C4H_Registration \n\n\n\nStep 3: \n\n\n\nJoin the zoom-session. \n\n\n\nIf your problem is selected for presentation\, you will get a time-slot of 30 – 60 minutes within the session. \n\n\n\nWhat are the Deadlines \n\n\n\nSubmission of a problem and upload of example data: Friday the week before the session. \n\n\n\nNotification about participation: The day before the session. \n\n\n\nNext Call4Help session \n\n\n\nTuesday\, March 1\, 2022\, 9.00-12.00. Deadline for application: Friday\, February 25\, 2022.
URL:https://www.scilifelab.se/event/bioimage-analysis-support-call4help-2/
LOCATION:Online event via Zoom
CATEGORIES:Event
ORGANIZER;CN="Bioimage Informatics Unit":MAILTO:biif@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220301T130000
DTEND;TZID=Europe/Stockholm:20220301T164500
DTSTAMP:20260404T161243
CREATED:20220216T091610Z
LAST-MODIFIED:20220216T095241Z
UID:10000528-1646139600-1646153100@www.scilifelab.se
SUMMARY:DDLS fellow position (BUL) at Uppsala University
DESCRIPTION:Welcome to listen to the seminars and discussions of the candidates for the DDLS Fellow position (BUL) on Biodiversity and Evolution at Uppsala University \n\n\n\n\n\n\n\n\n\nSchedule: \n\n\n\n13:00-13:45     Tobias Andermann\, University of Gothenburg\, Biodiversity research in the era of big data \n\n\n\n14:00-14:45    Mariana Pires Braga\, Swedish University of Agricultural Sciences\, Ancestral networks and the evolution of species interactions \n\n\n\n15:00-15:45     Quentin Geissmann\, University of British Columbia\, Using Open Hardware and Deep Learning to Study the Ecology of   Insect Sleep and Circadian Rhythm \n\n\n\n16:00-16:45    Wouter van der Bijl\, University of British Columbia\, The evolution of sexually dimorphic traits: selection\, constraint and   architecture \n\n\n\nZOOM LINK to the seminar
URL:https://www.scilifelab.se/event/ddls-fellow-position-bul-at-uppsala-university/
LOCATION:Online event via Zoom
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/02/DDLSEco_green.png
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220302T140000
DTEND;TZID=Europe/Stockholm:20220302T153000
DTSTAMP:20260404T161243
CREATED:20220224T150156Z
LAST-MODIFIED:20220302T091116Z
UID:10000538-1646229600-1646235000@www.scilifelab.se
SUMMARY:TissUUmaps 3: Interactive visualization and quality assessment of large-scale spatial omics
DESCRIPTION:HDCA Seminar Series 2022 | TissUUmaps \n\n\n\nSpeakers: \n\n\n\nCarolina Wählby and Christophe Avenel \n\n\n\nWe present TissUUmaps\, browser-based tool for GPU-accelerated visualization and interactive exploration of tens of millions of datapoints overlaying tissue samples. Users can visualize markers and regions\, explore spatial statistics and quantitative analyses of tissue morphology\, and assess the quality of decoding in situ transcriptomics data. TissUUmaps provides instant multi-resolution image viewing\, can be customized\, shared\, and also integrated in Jupyter Notebooks. It is also possible to directly connect spatial markers with markers in feature space\, such as UMAP plots\, to interactively relate feature space with physical space. We envision TissUUmaps to contribute to broader dissemination and flexible sharing of large-scale spatial omics data\, and it is already being used for sharing of data from the Human Developmental Lung Cell Atlas\, as shared via the TissUUmaps gallery: https://tissuumaps.github.io/gallery/. \n\n\n\nRegistration\n\n\n\n– \n\n\n\nHuman developmental cell atlas (HDCA) is the Swedish effort within the human cell atlas (HCA)\, one of the largest international scientific projects. The project aim is to create a comprehensive molecular atlas of human prenatal development at the molecular resolution using state-of-the-art multi-omic technologies such as single-cell RNA-seq\, Spatial Transcriptomics\, in situ sequencing in order to provide deeper insight into how variations and deviations contribute to health and disease. \n\n\n\nThe HDCA Seminar Series 2022 invites you to join us on a journey of early human organogenesis of several organs at the single-cell and spatial resolution. Seminars will be held at SciLifeLab Gamma building on Wednesdays at 14:00 or 15:00 and also via Zoom. After each seminar\, we will have up to 30 min round up discussions with the speaker on how you can contribute to the atlas!  \n\n\n\nWarm Welcome!
URL:https://www.scilifelab.se/event/tissuumaps-3-interactive-visualization-and-quality-assessment-of-large-scale-spatial-omics/
LOCATION:Gamma 2 Lunchroom\, SciLifeLab\, Tomtebodavägen 23\, Solna\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/02/logo_hdca2-1.png
ORGANIZER;CN="The Human Developmental Cell Atlas":MAILTO:hdca-sweden@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220308T091500
DTEND;TZID=Europe/Stockholm:20220308T153000
DTSTAMP:20260404T161243
CREATED:20220217T103823Z
LAST-MODIFIED:20220225T130011Z
UID:10000530-1646730900-1646753400@www.scilifelab.se
SUMMARY:NGI and BCA Lab Automation Symposium
DESCRIPTION:National Genomics Infrastructure  & Biochemical and Cellular Assay invites you to a Lab Automation Symposium. The meeting aim is to enable lab personnel to share experiences and learn about how you can automate genomic and drug discovery workflows. We hope you will be able to join us for this hybrid event\, either on-site at SciLifeLab or online\, for what we hope will be an enjoyable and informative day. \n\n\n\nregister here\n\n\n\nAgenda\n\n\n\n9:15Beckman’s Lab Automation Portfolio\, highlighting Acoustic Dispensing9:35Automating cfDNA Extraction for non-invasive Liquid Biopsies10:00Genomics Assay Miniaturization – Leveraging acoustic and tip-based technologies to increase throughput of SARS-CoV-2 genome sequencing10:45Coffee break11:00Miniaturized tagmentation step of Smart-seq2/3 for Single-Cell RNA Sequencing\,Jianping Liu\, Senior Lab Manager SICOF\, Karolinska Institutet11:30NGS solutions from Integrated DNA Technologies (IDT)Christos Coucoravas\, PhD12:00High-Throughput NGS Automation at NGI SciLifeLab Solna12:30Lunch13:30Acoustic Sample Management: Arrayed CRISPR14:00Automating Drug Discovery Workflows – Acoustic Tube and Sample Management14:3010 years with Echo at BCA SciLifelab Solna Bo Lundgren\, Head of BCA SciLifeLab15:00Ask the ExpertsQ&A session with Swedish Fika
URL:https://www.scilifelab.se/event/lab-automation-symposium/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220308T093000
DTEND;TZID=Europe/Stockholm:20220308T170000
DTSTAMP:20260404T161243
CREATED:20220302T140124Z
LAST-MODIFIED:20220302T140147Z
UID:10000543-1646731800-1646758800@www.scilifelab.se
SUMMARY:KTH Data-driven Life Science Fellow Candidate Seminars
DESCRIPTION:These public presentations are linked to the recruitment of two tenure-track assistant professor positions in data-driven life science (DDLS) at KTH Royal Institute of Technology: “Data-driven Precision Medicine and Diagnostics” at the Department of Protein Science\, School of Engineering Sciences in Chemistry\, Biotechnology and Health\, and “Data-driven Cell and Molecular Biology” at the Department of Applied Physics\, School of Engineering Sciences. \n\n\n\nThe presentations are given by the invited applicants for the corresponding positions. Each presentation is 25 min followed by 5 min Q&A. \n\n\n\nMeeting ID: 686 6993 7651Password: AliceBall \n\n\n\nRead more\n\n\n\n09:30-11:45 – Presentations by invited candidates to the position within data-driven precision medicine and diagnostics\n\n\n\nHost: Cecilia Williams\, Head Department of Protein Science\, School of Engineering Sciences in Chemistry\, Biotechnology and Health\, KTH. \n\n\n\n9:30 – Welcome by Cecilia Williams\, Head of Department\, KTH9:40 – Presentation by Fredrik Edfors\, KTH “Next-generation precision medicine: Proteomic data-integration in a new era of preventive medicine”10:10 – Presentation by Cheng Zhang\, KTH“Application of systems biology in drug development for NAFLD”10:40 – Presentation by Fabian Froehlich\, Harvard Medical School “Dynamic Models for Data-Driven Drug Sensitivity Prediction”11:10 – Presentation by Md Saifur Rahman Khan\, University of Toronto“Unbiased data analytics and bioinformatics for drug discovery\n\n\n\n13:30-14:30 – Public presentations by candidates to the positions within data-driven precision medicine and diagnostics and data-driven cell and molecular biology\n\n\n\nHost: Lucie Delemotte\, Associate Professor\, Department of Applied Physics\, School of Engineering Sciences\, KTH. \n\n\n\n13:30 – Presentation by Wei Ouyang\, KTH“Towards AI-powered Data-driven Whole-cell Modeling”14:00 – Presentation by Rocío Mercado\, Massachusetts Institute of Technology “Data-driven therapeutics development: from de novo drug design to precision medicine applications”\n\n\n\n14:30-16:30 – Public presentations by candidates the position within data-driven cell and molecular biology\n\n\n\nHost: Lucie Delemotte\, Associate Professor at Department of Applied Physics\, School of Engineering Sciences\, KTH. \n\n\n\n14:30 – Presentation by Björn Forsberg\, Oxford University“Cell-surface receptor function by cryo-EM: more than a structure”.15:00 – Presentation by Robin Lindsay\, Uppsala University“Cellular motility and function within tissues: what causes it to change and how can this help us?”15:30 – Presentation by David Unnersjö-Jess\, University Hospital of Cologne “Automated Quantitative Analysis of High-resolution Microscopy Data for Biomedical Applications”16:00 – Presentation by Jens Magnusson\, Stanford University “Data-driven multi-gene regulation for precision cell engineering”
URL:https://www.scilifelab.se/event/kth-data-driven-life-science-fellow-candidate-seminars/
LOCATION:Online event via Zoom
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2020/10/DDLS2_WP.jpg
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220308T160000
DTEND;TZID=Europe/Stockholm:20220308T173000
DTSTAMP:20260404T161243
CREATED:20220228T081251Z
LAST-MODIFIED:20220228T081455Z
UID:10000540-1646755200-1646760600@www.scilifelab.se
SUMMARY:Scaling up: zebrafish accelerate drug and gene discovery
DESCRIPTION:Uppsala Zebrafish Forum seminarRandall T. PetersonDepartment of Pharmacology and Toxicology\,University of Utah\,Salt Lake City\, UT\, USA.https://pharmacy.utah.edu/pharmtox/randall/randall-peterson-labScaling up: zebrafish accelerate drug and gene discovery \n\n\n\nRegistration
URL:https://www.scilifelab.se/event/scaling-up-zebrafish-accelerate-drug-and-gene-discovery/
LOCATION:Online event via Zoom
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/02/DanioReadout_1.jpg
ORGANIZER;CN="Genome Engineering Zebrafish":MAILTO:ebc_zf@ebc.uu.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220310T150000
DTEND;TZID=Europe/Stockholm:20220310T170000
DTSTAMP:20260404T161243
CREATED:20220215T092227Z
LAST-MODIFIED:20220217T192619Z
UID:10000527-1646924400-1646931600@www.scilifelab.se
SUMMARY:NGI and Affinity Proteomics seminar
DESCRIPTION:Next-generation affinity proteomics – inspiration for analysis and validation at SciLifeLab\n\n\n\nThe proteome refers to the entire set of proteins produced by all genes in the body\, and it is both dynamic and highly personalized. A protein biomarker indicates a change in expression or its state that correlates with the risk or progression of a disease\, or with the susceptibility of a disease to a given treatment. Such unique biomarkers are often found in low concentrations in plasma. The Proximity Extension Assay (PEA) commercialized by Olink Proteomics is one of the technologies developed to quantify plasma biomarkers from a range of concentrations and offers a high-throughput alternative to traditional methods\, such as ELISA.  \n\n\n\nThe newly released Olink Explore technology brings together the specificity of PEA with a high throughput Next Generation Sequencing (NGS) readout\, which today enables multiplex analysis of >3000 proteins from only a few microliters of body fluid. This technique is now available to researchers in Sweden via a collaboration between Affinity Proteomics and the National Genomics Infrastructure (NGI) at the SciLifeLab Explore Lab\, physically located at BMC in Uppsala. During the seminar we will briefly present the Olink Explore technology and data from users to give guidance and inspiration for future projects. \n\n\n\nThe seminar will be recorded and can be found at the SciLifeLab YouTube channel about 2 days after the event. \n\n\n\nThe Zoom link will be provided in the confirmation email. \n\n\n\nFor more information\, please contact explorelab@scilifelab.uu.se \n\n\n\nRegistration\n\n\n\nProgram\n\n\n\n15:00Welcome and introductionMikael Åberg\, Head\, Affinity Proteomics UppsalaJessica Nordlund\, Facility Director\, NGI Uppsala (moderator)15:05Olink Explore: Broader\, faster and more comprehensive proteomicsNikolaos Tertipis\, Olink Proteomics15:15Strategies for validating biomarkers in biofluids Claudia Fredolini\, Head\, Affinity Proteomics Stockholm15:25Experiences from a pilot study with Olink Explore in two ovarian cancer cohorts Stefan Enroth\, associate professor\, Uppsala University15:45Multiplatform approach for plasma proteomics in health and disease Fredrik Edfors\, Senior Researcher\, Karolinska Institutet16:05Disease-associated module enrichment and preanalytical considerations for robust biomarker discoverySandra Hellberg\, Postdoktor\, Linköping University& Ingrid Skelton Kockum\, Professor\, Karolinska Institutet16:25Q&AAll presenters16:45Closing remarksJessica Nordlund and Mikael Åberg17:00End of day
URL:https://www.scilifelab.se/event/ngi-and-affinity-proteomics-seminar/
LOCATION:Online event via Zoom
CATEGORIES:Event
ORGANIZER;CN="Affinity Proteomics":MAILTO:affinity.proteomics-uppsala@scilifelab.uu.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220314T151500
DTEND;TZID=Europe/Stockholm:20220314T161500
DTSTAMP:20260404T161243
CREATED:20220307T092733Z
LAST-MODIFIED:20220309T145506Z
UID:10000545-1647270900-1647274500@www.scilifelab.se
SUMMARY:The Svedberg seminar series: Prof. Claudia Langenberg
DESCRIPTION:Berlin Institute of Health at Charité Universitätsmedizin\, Berlin\, Germany and MRC Epidemiology Unit\, University of Cambridge\, UK \n\n\n\nLink to zoom meeting\n\n\n\n\n\n\n\n\n\n\n\n\n\nFrom molecules to health records: utility of omics at population scale\n\n\n\nApplication of different omic technologies is now feasible at population scale. This talk will present examples of how the integration of different omics in large patient and population studies can help to predict disease risk\, understand mechanisms\, and reveal shared connections between different diseases. \n\n\n\nShort bio: Claudia Langenberg is Professor of Computational Medicine at the Berlin Institute of Health at Charité (BIH) and MRC Investigator and Programme Leader at the MRC Epidemiology Unit at the University of Cambridge. Her research is focused on the genetic basis of metabolic control\, and her team studies its effects on health through integration of molecular with clinical data in large-scale patient and population-based studies. \n\n\n\nOmniScience\n\n\n\nComputational Medicine at Berlin Institute of Health\n\n\n\n \n\n\n\nHost: Jochen Schwenk\, KTH/SciLifeLab
URL:https://www.scilifelab.se/event/the-svedberg-seminar-series-prof-prof-claudia-langenberg/
LOCATION:Online event via Zoom
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/02/Picture1-The-Svedberg.png
ORGANIZER;CN="The Svedberg Seminar Series":MAILTO:thesvedberg@scilifelab.uu.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220316T150000
DTEND;TZID=Europe/Stockholm:20220316T160000
DTSTAMP:20260404T161243
CREATED:20220225T133626Z
LAST-MODIFIED:20220225T133630Z
UID:10000539-1647442800-1647446400@www.scilifelab.se
SUMMARY:Targeting metabolic activities in the cell’s nucleus
DESCRIPTION:Targeting metabolic activities in the cell’s nucleus \n\n\n\nStefan Kubicek \n\n\n\nHead\, Molecular Discovery PlatformResearch Center for Molecular Medicine of the Austrian Academy Sciences (Ce-M-M)
URL:https://www.scilifelab.se/event/targeting-metabolic-activities-in-the-cells-nucleus/
LOCATION:Gamma 2 Lunchroom\, SciLifeLab\, Tomtebodavägen 23\, Solna\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/02/Flyer_CBSS_20220316.jpg
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220317T100000
DTEND;TZID=Europe/Stockholm:20220317T110000
DTSTAMP:20260404T161243
CREATED:20220302T135444Z
LAST-MODIFIED:20220302T135446Z
UID:10000542-1647511200-1647514800@www.scilifelab.se
SUMMARY:Unleashing the Power of Single-Cell Multi-Modal Analysis to Advance Precision Medicine
DESCRIPTION:Clinical Genomics Uppsala and Mission Bio jointly organizes this webinar highlighting the key advantages of multi-omics single-cell technology. \n\n\n\nIn the webinar\, we will present ongoing pilot studies using Mission Bio Tapestri at Clinical Genomics Uppsala. We will also get an introduction to Mission Bio’s Tapestri capabilities on SNV\, CNV\, and protein sequencing at scale\, the workflow and its applications in oncology and cell and gene therapy. \n\n\n\nRead more and register
URL:https://www.scilifelab.se/event/unleashing-the-power-of-single-cell-multi-modal-analysis-to-advance-precision-medicine/
LOCATION:Online event via Zoom
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/03/Image-Seminar.png
ORGANIZER;CN="Clinical Genomics Uppsala":MAILTO:clinicalgenomicsuppsala@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220318T090000
DTEND;TZID=Europe/Stockholm:20220318T093000
DTSTAMP:20260404T161244
CREATED:20220117T165753Z
LAST-MODIFIED:20220308T081854Z
UID:10000510-1647594000-1647595800@www.scilifelab.se
SUMMARY:True precision medicine in immuno-oncology\, challenges\, and opportunities
DESCRIPTION:Sara Mangsbo\, biträdande universitetslektor vid institutionen för farmaceutisk biovetenskap\, Immunonkologi.\n\n\n\n\n\nOn March 18\, Uppsala University Associate Professor Sara Mangsbo will talk about how the future of cancer therapy is becoming personal. Sara co-founded Strike Pharma to further develop the Uppsala University and SciLifeLab Drug Discovery platform co-developed ADAC technology (Adaptable Drug Affinity Conjugates).  \n\n\n\nWith current diagnostic tools also\, immunotherapy can and should enter the omics-field and the developed delivery platform envisions a truly patient tailored neoantigen cancer vaccine strategy\, ensuring that the body becomes the factory to generate tumor-specific T cells\, that can find and destroy tumor cells regardless of the location in the body. With a cost and time efficient “True Precision Medicine” approach\, tailored therapeutics will be a realistic future\, ultimately lowering the healthcare burden for a sustainable future. \n\n\n\nSara Mangsbo \n\n\n\nregister to receive zoom link\n\n\n\nSara Mangsbo is a Senior Lecturer in Antibody Drugs at Uppsala University at the Department of Pharmacy. She has her education background with a PhD in Clinical Immunology Uppsala University. Sara has since completed her postdoctoral studies at Leiden University Medical Center and started her own research group at Uppsala University in 2016. Her work focuses on the development and immunological characterization of novel immunotherapies and therapeutic combination strategies for drug discovery. Sara has previously also held a brand lead position in Immuno-oncology at Astra Zeneca’s marketing division and co-founded the drug development and service company startups Immuneed AB and VivoLogica AB (current board member). The drug development platform from Immuneed was acquired by the Norwegian pharmaceutical company Ultimovacs in 2018.  \n\n\n\nIn late 2020\, Sara co-founded Strike Pharma AB. Strike Pharma develops a novel next generation Antibody-Drug Conjugate (ADC) technology\, the ADAC technology. ADACs are short for Adaptable Drug Affinity Conjugates and are built to improve deliver tailored made synthetic peptides to specific cell types for improved immune modulation. Using the ADAC platform\, efficient delivery and extended half-life of patient tailored peptide therapeutics will ensure that the body becomes the factory\, producing billions of T cells that can find and destroy tumors cells regardless of the location in the body. \n\n\n\n\n\n\n\n\n\n\n\n“Clinical Talks” has been renewed for yet another exciting\, innovative\, and enlightening season. This season will focus on sustainable innovations within Life Sciences\, that have the potential to contribute to a better climate friendly future for our future generations. Also new this year is that the seminar is co-organized in a collaboration between SciLifeLab and KI Innovations . \n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nSeason 5\, will be held September 2021 until March 2022 with scheduled Talks\, during Friday mornings 09-09:30 am via ZOOM (with some time-zone friendly adjustments for our international speakers). Each session consists of a talk given by our invited speaker followed by Q&A. The seminar is an open educational seminar series for our ever-expanding Life Science community.
URL:https://www.scilifelab.se/event/true-precision-medicine/
LOCATION:Online event via Zoom
CATEGORIES:Event
ORGANIZER;CN="Clinical Talks":MAILTO:precisionmedicine@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220318T150000
DTEND;TZID=Europe/Stockholm:20220318T163000
DTSTAMP:20260404T161244
CREATED:20220224T131344Z
LAST-MODIFIED:20220224T131459Z
UID:10000537-1647615600-1647621000@www.scilifelab.se
SUMMARY:Mapping human tissue architecture using spatial transcriptomics
DESCRIPTION:Omer Ali Bayraktar\, PhDWellcome Sanger Institute\, UK \n\n\n\nAbstract \n\n\n\nSpatial transcriptomic technologies promise to resolve cellular wiring diagrams of tissues in health and disease\, but comprehensive mapping of cell types in situ remains a challenge. First\, I will present сell2location\, a principled Bayesian model that can resolve fine-grained cell types in spatial transcriptomic data and create comprehensive cellular maps of diverse tissues. We comprehensively assess cell2location in three different tissues and demonstrate its versatility for mapping complex tissue architecture. Second\, I will introduce our work on dissecting tissue pathology in severe COVID-19 and demonstrate how integrated single cell and spatial transcriptomics can map the cellular landscape of alveolar damage in the human lung. \n\n\n\n \n\n\n\nBiography \n\n\n\nDr Bayraktar is a neuroscientist interested in studying human brain development and disease. His technical interests are focused on high-throughput spatial genomics. Omer was a postdoctoral fellow in David Rowitch’s lab\, where he developed new spatial genomic pipelines for mapping large tissues and discovered astroglial layers in the cerebral cortex. Omer started his research group in the Cellular Genetics Programme at the Wellcome Sanger Institute in 2018. His group has developed new computational tools to integrate single cell and spatial transcriptomics data for comprehensive mapping of cell types across complex tissues. \n\n\n\nCurrently\, Omer is leading the Sanger-EBI High-Throughput Spatial Genomics Team to develop experimental and computational platforms to map human tissue architecture at scale.
URL:https://www.scilifelab.se/event/mapping-human-tissue-architecture-using-spatial-transcriptomics/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Event
ORGANIZER;CN="Joakim Lundeberg":MAILTO:joakim.lundeberg@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220322T083000
DTEND;TZID=Europe/Stockholm:20220322T170000
DTSTAMP:20260404T161244
CREATED:20211209T150106Z
LAST-MODIFIED:20220321T144403Z
UID:10000499-1647937800-1647968400@www.scilifelab.se
SUMMARY:DDLS Research area conference
DESCRIPTION:Welcome to join a full day Research area conference within The SciLifeLab and Wallenberg national program for Data-Driven Life Science!  \n\n\n\nThe practice of life science is continuously becoming more data-dependent. The amount and complexity of data is growing exponentially\, and more scientific discoveries are enabled when data is openly available to researchers across the world. This is the basis for the SciLifeLab and Wallenberg National Program on Data-Driven Life Science (DDLS). \n\n\n\nThe program focuses on four strategic areas for data-driven research\, all of which are essential for improving the lives of people as well as animals and nature\, detecting and treating diseases\, protecting biodiversity and creating sustainability. \n\n\n\nData-driven Cell and molecular biologyData-driven Epidemiology and Biology of infectionsData-driven Evolution and biodiversityData-driven Precision medicine and diagnostics\n\n\n\nThe conference will focus on enthusing research within the four research areas and aims to bring together researchers within the field for discussion and sharing the latest within the research areas. The meeting will offer an exciting compilation of keynotes\, special lectures within the four fields and opportunities to meet and discuss with prominent researchers.  \n\n\n\nAnyone with interest in the data-driven research field is welcome to participate. The full-day conference will be virtual (Zoom). \n\n\n\nDate: March 22\, 2022. \n\n\n\nMaximum of 500 participants.  \n\n\n\nRegister here\n\n\n\nInformation about the DDLS Program\n\n\n\n \n\n\n\nProgram\n\n\n\n08:30WelcomeOlli Kallioniemi\, Director SciLifeLabPresentation of Research areas and future plansResearch area leads08:45Keynote:Big data in biology – what the pandemic has taught us.Professor Ewan Birney CBE FRS FMedSciDeputy Director General\, EMBLDirector\, EMBL-EBI09:15Break09:25Data-driven Cell and molecular biology\, Erik LindahlLive-Seq: Transcriptomic Profiling of Living Single Cells (25’+5′)Orane Guillaume-Gentil\, ETH ZürichHow personalised is your immune system? (25’+5′)Aleksandra Walczak\, Ecole Normale SupérieurePredicting the structure of protein complexes using alphafold (25’+5′)Arne Elofsson\, Stockholm University11:05Data-driven Precision medicine and diagnostics\, Janne LehtiöLongitudinal analysis of health data at population scale (35’+5′)Søren Brunak\, University of CopenhagenLife beyond the pixels: machine learning in single cell microscopy (20’+5′)Peter Horvath\, Biological Research Centre\, SzegedIntegration and interpretation of multiomics data using graph analytics (20’+5′)Alberto Santos Delgado\, University of Copenhagen/Boehringer Ingelheim12:35Lunch 13:05Welcome back!Moderator13:10Data-driven Epidemiology and Biology of infections\, Oliver BillkerLeveraging genomic data to identify and track emerging bacterial pathogens (25′)Laura Michelle Carroll\, EMBL\, newly recruited DDLS fellowUsing functional genomics & functional transcriptomics to understand Salmonella infection biology (25′)Jay Hinton\, University of LiverpoolTracking the rise and fall of SARS-CoV-2 variants in the UK with over two million viral genomes (25′)Jeffrey Barrett\, Wellcome Sanger Institute/Nightingale HealthPanel discussion (15′)14:40Break14:50Data-driven Evolution and biodiversity\, Fredrik RonquistBiodiversity research in the era of big data (25’+5′)Tobias Andermann\, Gothenburg UniversityInferring evolution using genomic data: why probabilistic modeling is important (25’+5′)Nicolas Lartillot\,CNRS / University of Lyon 1Using population genetic inference to gain medically relevant insights (25’+5′)Ida Moltke\, University of Copenhagen16:20Break16:30Discussion in Research specific breakout rooms (25′)16:55Closing words17:00End of day\n\n\n\nThe conference is part of the SciLifeLab and Wallenberg national program for the DDLS program\, funded by the Alice and Knut Wallenbergs Foundation.
URL:https://www.scilifelab.se/event/ddls-research-area-conference/
LOCATION:Online event via Zoom
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2021/12/Artboard-4_2.jpg
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220323T151500
DTEND;TZID=Europe/Stockholm:20220323T164500
DTSTAMP:20260404T161244
CREATED:20220310T100339Z
LAST-MODIFIED:20220315T133531Z
UID:10000550-1648048500-1648053900@www.scilifelab.se
SUMMARY:SciLifeLab COVID-19 seminar: Nicole Doria-Rose and Mattias Forsell
DESCRIPTION:Topic: Vaccination \n\n\n\nThe first SciLifeLab COVID-19 seminar this spring starts with Nicole Doria-Rose\, PhD and Chief of the Humoral Immunology Core at the Vaccine Research Center of the National Institutes of Health\, USA\, talking about Development of COVID-19 Vaccines at the NIH Vaccine Research Center. Mattias Forsell\, Associate Professor of Immunology and Senior Lecturer in Biomedical Laboratory Sciences at Umeå University\, then continues the seminar with his talk on The immunology of COVID-19 vaccination: from basic mechanisms to population-based responses \n\n\n\n\n\n\n\nSchedule \n\n\n\n15:15- 16:00 – Development of COVID-19 Vaccines at the NIH Vaccine Research Center            Nicole Doria-Rose\, Vaccine Research Center (VRC) of the National Institutes of Health\, USA 16:00-16:45 – The immunology of COVID-19 vaccination: from basic mechanisms to population-based responsesMattias Forsell\, Umeå University\n\n\n\n \n\n\n\nRegistration is mandatory to get the Zoom link for the event  \n\n\n\n\nREGISTRATION\n\n\n\nBIOS & ABSTRACTS
URL:https://www.scilifelab.se/event/scilifelab-covid-19-seminars-nicole-doria-rose-and-mattias-forsell/
LOCATION:Online event via Zoom
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2021/05/covid_3d_model-min-1536x864-1.jpg
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220323T160000
DTEND;TZID=Europe/Stockholm:20220323T170000
DTSTAMP:20260404T161244
CREATED:20220210T163114Z
LAST-MODIFIED:20220210T163114Z
UID:10000526-1648051200-1648054800@www.scilifelab.se
SUMMARY:FAIRPoints Presents- Harmonising FAIR data sharing with Legal Compliance
DESCRIPTION:Location: Online via Zoom \n\n\n\n\n\nSee Event in your Time Zone \n\n\n\nSpeaker: Harshvardhan J. Pandit \n\n\n\nSpeakers bio  \n\n\n\nFAIRPoints is an event series highlighting pragmatic measures developed by the community towards the implementation of the FAIR (Findable\, Accessible\, Interoperable\, Reusable) data principles\, in collaboration with GoFAIR US\, SDSC\, AGU\, and SciLifeLab Data Centre.  \n\n\n\nFAIR mechanisms have pioneered a new paradigm of making data discoverable\, accessible\, and reusable. At the same time\, a new wave of privacy and data protection laws (including GDPR) around the world is regulating how personal data is shared responsibly.  \n\n\n\nThis talk explores the intersection between the two communities and discusses how each can help the other. In particular\, it focuses on how we can utilise FAIR metadata and mechanisms to ensure data is shared and used legally while also increasing its reusability. Conversely\, it also takes a look at what FAIR principles can do for improving how we deal with legal compliance. \n\n\n\n \n\n\n\n\n\n\n\nRegister here\n\n\n\nSign up for future events here \n\n\n\nTwitter: @FAIR_Points
URL:https://www.scilifelab.se/event/fairpoints-presents-harmonising-fair-data-sharing-with-legal-compliance/
LOCATION:Online event via Zoom
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220328T151500
DTEND;TZID=Europe/Stockholm:20220328T161500
DTSTAMP:20260404T161244
CREATED:20220307T155747Z
LAST-MODIFIED:20220315T155833Z
UID:10000546-1648480500-1648484100@www.scilifelab.se
SUMMARY:Digital twins for predictive\, preventive and personalised medicine
DESCRIPTION:Prof. Mikael Benson\n\n\n\nLinköping University\, Sweden \n\n\n\n\n\nRegister HERE\n\n\n\n\n\n\n\n\n\nMikael Benson is a professor of pediatrics\, whose team aims to construct digital twins of individual patients for predictive\, preventive and personalised medicine \n\n\n\nDigital twins for predictive\, preventive and personalised medicine\n\n\n\nDigital twins are high-resolution models of individual patients. Each twin is computationally treated with thousands of drugs to find optimal drug or drugs for the patient: The twins are constructed by combining omics data down to the single cell level with routine clinical data. \n\n\n\nHost: Prof. Olli Kallioniemi \n\n\n\nRead more about the swedish digital twin consortium
URL:https://www.scilifelab.se/event/the-svedberg-seminar-prof-mikael-benson/
LOCATION:Online event via Zoom
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/02/Picture1-The-Svedberg.png
ORGANIZER;CN="The Svedberg Seminar Series":MAILTO:thesvedberg@scilifelab.uu.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220329T120000
DTEND;TZID=Europe/Stockholm:20220329T130000
DTSTAMP:20260404T161244
CREATED:20220315T135102Z
LAST-MODIFIED:20220318T161438Z
UID:10000556-1648555200-1648558800@www.scilifelab.se
SUMMARY:Fluorescence In Situ Hybridization (FISH) – Advanced Technologies for Single Cell Visualization and Identification
DESCRIPTION:In the frame of the “SciLifeLab Site Umeå / KBC Infrastructure Seminar Series”\, Natuschka Lee\, Research fellow at the Department of Ecology and Environmental Sciences\, UmU\, will present the Fluorescence In Situ Hybridization (FISH) infrastructure. \n\n\n\nPresenter:Natuschka LeeResearch fellow at Department of Ecology and Environmental Sciences \n\n\n\nMore information about the infrastructure: Homepage \n\n\n\nRegistration:To register your physical attendance and reserve your free sandwich\, please go to the Registration Link \n\n\n\nregistration\n\n\n\nPhysical Attendance:Glasburen seminar roomChemical Biological Centre (KBC) BuildingUmeå University \n\n\n\nOnline Attendance:You can join the seminar on Zoom:https://umu.zoom.us/j/63138997026
URL:https://www.scilifelab.se/event/fluorescence-in-situ-hybridization-fish-advanced-technologies-for-single-cell-visualization-and-identification/
LOCATION:Glasburen Seminar Room\, Chemical Biological Centre (KBC) Building\, Umeå University\, Umeå\, 901 87\, Sweden
CATEGORIES:Event
ORGANIZER;CN="SciLifeLab Ume%C3%A5":MAILTO:umea@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220330T093000
DTEND;TZID=Europe/Stockholm:20220330T120000
DTSTAMP:20260404T161244
CREATED:20211215T171934Z
LAST-MODIFIED:20220324T163435Z
UID:10000501-1648632600-1648641600@www.scilifelab.se
SUMMARY:NGI and Nanopore; tech update seminar
DESCRIPTION:Note! The event was originally planned for January but was postponed. This is the new date! \n\n\n\nNational Genomics Infrastructure has now increased capacity for methylation calling\, direct RNA sequencing\, sequencing of ultra-long fragments to resolve structural variation. Do you want to hear more? We invite you to an event where you will be able to hear the latest tech updates from Oxford Nanopore Technologies as well as hearing from NGI and the following local and international users about their research using nanopore sequencing. \n\n\n\n \n\n\n\nThe event will be a hybrid event with the possibility to attend on-site in Trippelrummet\, Navet\, BMC\, Uppsala or via zoom. This event is free to attend\, but registration is required.  \n\n\n\nRegistration\n\n\n\nAGENDA\n\n\n\n09:30Welcome09:35Introduction to Oxford Nanopore SequencingJakob Ørtvig\, Oxford Nanopore Technologies09:50Nanopore sequencing at NGIAnna Petri\, National Genomics Infrastructure10:10Coffee break10:40Interrogating the effects of CRISPR-Cas9 genome editing by long-read sequencingIda Höijer\, National Genomics Infrastructure11:00Using ONT-sequencing to gain insight into genome structure and functionCarl-Johan Rubin\, Uppsala University11:20Developing an end-to-end solution to deliver long read whole genome sequencing for cancerMelanie Tanguy\, Genomics England11:40Q&A12:00End of day
URL:https://www.scilifelab.se/event/ngi-and-nanopore-tech-update-seminar/
LOCATION:Navet\, SciLifeLab Uppsala\, SciLifeLab Uppsala\, BMC C11\, Husargatan 3\, Uppsala\, 75237\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2021/12/NGI_Nanopore_March-30_2022.png
ORGANIZER;CN="National Genomics Infrastructure (NGI)":MAILTO:support@ngisweden.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220330T100000
DTEND;TZID=Europe/Stockholm:20220330T120000
DTSTAMP:20260404T161244
CREATED:20220302T143807Z
LAST-MODIFIED:20220308T085344Z
UID:10000544-1648634400-1648641600@www.scilifelab.se
SUMMARY:Legal aspects of SARS-CoV-2 genome data processing and sharing across Europe 
DESCRIPTION:Location: Online via Zoom\n\n\n\n\n\nThis online workshop will showcase how to address the legal aspects of mobilising SARS-CoV-2 genome data across Europe and is specifically designed to cater to organisations acting as regional or national coordinators tasked with brokering data across healthcare systems\, research infrastructures and publicly accessible data sharing platforms. It is organised by ELIXIR CONVERGE WP9 in collaboration with SciLifeLab and includes speakers on GDPR and local legislation as well as presentations of solutions adopted and developed by project members. \n\n\n\nParticipants should be aware that the workshop will not provide legal advice. The workshop will provide participants with examples of legal contexts for data processing and contracts between organisations within a selection of national legal frameworks. The workshop also aims to illustrate how legal aspects come into play when genetic\, personal and phenotypic patient information is processed\, masked and shared across data producers\, data brokers and data sharing platforms. \n\n\n\nBefore the workshop\, participants will be encouraged to answer a short survey related to the workshop’s content. \n\n\n\nRegistration is required to receive the Zoom link.  \n\n\n\nWorkshop outline (10:00–12:00)\n\n\n\nIntroduction and survey results (10 min)Legal aspects of mobilising SARS-CoV-2 genome data (20 min)Examples of implementations in organisations across Europe (20 min)Break (10 min)Examples of implementations in organisations across Europe (30 min)Sharing data through the European COVID-19 data portal (20 min)Closing remarks (10 min)\n\n\n\n\n\n\n\nRegister here
URL:https://www.scilifelab.se/event/legal-aspects-sars-cov-2-genome-data-processing-and-sharing/
LOCATION:Online event via Zoom
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/03/Artboard-1.png
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220404T140000
DTEND;TZID=Europe/Stockholm:20220404T150000
DTSTAMP:20260404T161244
CREATED:20220316T072135Z
LAST-MODIFIED:20220331T055237Z
UID:10000559-1649080800-1649084400@www.scilifelab.se
SUMMARY:Information meeting – Call for Therapeutic Oligonucleotide Projects at OligoNova Hub / SciLifeLab DDD
DESCRIPTION:The mission of the Drug Discovery and Development Platform at SciLifeLab is to support researchers in developing new drugs\, transforming academic ideas into new treatments. Therapeutic oligonucleotides is a recent addition to the Drug Discovery and Development platform’s capacity\, available through the OligoNova Hub in Gothenburg.  \n\n\n\nNow\, the first call for therapeutic oligonucleotide projects is opening (March 28 – May 13\, 2022). \n\n\n\nAt this online information meeting\, there will be a presentation of the call and you as an applicant will have the opportunity to ask questions about the call and the application process.  \n\n\n\nThe call text will be published via the SciLifeLab and OligoNova websites on March 28. \n\n\n\nRegister here\n\n\n\n\n\n\n\nOligoNova Hub is a national facility providing academic researchers in Sweden with support and capabilities to convert ideas and discoveries into potential new oligonucleotide therapies. OligoNova Hub is part of the SciLifeLab Drug Discovery and Development platform\, and is located at the AZ BioVentureHub campus in Gothenburg. The OligoNova Hub offers full capacity for the design\, synthesis\, evaluation and optimization of therapeutic oligonucleotides to academic researchers. The hub has been made possible through support from the Knut and Alice Wallenberg foundation\, SciLifeLab\, University of Gothenburg\, Region Västra Götaland\, and a donation from Carl Bennet.
URL:https://www.scilifelab.se/event/information-meeting-call-for-therapeutic-oligonucleotide-projects-at-oligonova-hub-scilifelab-ddd/
LOCATION:Online event via Zoom
CATEGORIES:Event
ORGANIZER;CN="OligoNova - Part of the Drug Discovery and Development Platform":MAILTO:par.matsson@oligonova.org
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220404T140000
DTEND;TZID=Europe/Stockholm:20220404T150000
DTSTAMP:20260404T161244
CREATED:20220325T125600Z
LAST-MODIFIED:20220325T143719Z
UID:10000569-1649080800-1649084400@www.scilifelab.se
SUMMARY:Information Meeting: Call for therapeutic oligonucleotide projects
DESCRIPTION:This digital information meeting will be held April 4\, 2022 at 14.00–15.00. At this meeting\, there will be a presentation of the call and you as an applicant will have the opportunity to ask questions about the call and the application process. \n\n\n\nregister here to receive zoom link\n\n\n\nApply in the call here\n\n\n\nThe mission of the Drug Discovery and Development Platform at SciLifeLab is to support researchers in developing new drugs\, transforming academic ideas into new treatments. To this end\, the DDD platform provides state-of-the-art drug discovery technologies to scientists across the country. Therapeutic oligonucleotides are a recent addition to the DDD platform’s capacity\, complementing the previous focus on small molecule and protein drugs. Oligonucleotide drugs have different modes of action\, and a potentially faster development compared to other drug types. Therapeutic oligonucleotide development is supported by the OligoNova Hub\, based in Gothenburg and part of SciLifeLab’s DDD platform. \n\n\n\nIn this call\, we are looking for project ideas for new therapeutic oligonucleotides that can be developed at DDD and OligoNova Hub. Approved project ideas will be developed in close collaboration between the academic laboratory and drug development experts at DDD and OligoNova Hub. The costs of the projects will mainly be covered by OligoNova\, but academic partners will be expected to contribute by paying for reagent costs. \n\n\n\nThe call is open for scientists with a doctoral degree at a Swedish university or higher institution. English should be used when filling out this application. You are responsible for ensuring that the application is complete. Incomplete applications will not be processed. Attach only material that we explicitly request. SciLifeLab DDD/OligoNova will not accept additional information after the closing date for applications\, except for information we ourselves explicitly request. Applications are reviewed by a review committee with international representation. \n\n\n\nCall Announcement FlyerDownload\n\n\n\nThe call is open March 28\, 2022 to May 13\, 2022.
URL:https://www.scilifelab.se/event/information-meeting-call-for-therapeutic-oligonucleotide-projects/
LOCATION:Online event via Zoom
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220405T090000
DTEND;TZID=Europe/Stockholm:20220405T120000
DTSTAMP:20260404T161244
CREATED:20220121T160038Z
LAST-MODIFIED:20220121T160039Z
UID:10000513-1649149200-1649160000@www.scilifelab.se
SUMMARY:BioImage Analysis support - Call4Help
DESCRIPTION:Every 1st week of the month (mainly on Tuesdays\, but there might be exceptions) the BioImage Informatics Facility together with microscopy expert Sylvie Le Guyader (LCI\, Karolinska Institutet) organizes a Call4Help session. The aim is to offer combined expertise towards microscopy and bioimage analysis. All researchers from Swedish institutes can participate. \n\n\n\nThe ideal timepoint to join the Call4Help session is when a researcher has performed pilot experiments and has tried out first analysis approaches – but before having recorded hundreds of images. Combining BIIF’s expertise in BioImage Analysis with microscopy expertise we can discuss ways to record the images that allow analysis afterwards. We will discuss different analysis approaches using mainly open-source software (Fiji\, CellProfiler\, QuPath\, Ilastik\, KNIME)\, but also commercial systems\, if needed (Imaris). \n\n\n\nThe Call4Help session format has been introduced to the BioImage Analysis community by NEUBIAS and ScopeM. \n\n\n\nHow to participate? \n\n\n\nStep1: \n\n\n\nPrepare a short presentation (5-7 min)  – use the following template for your presentation: \n\n\n\nhttp://bit.ly/BIIF_C4H_slideTemplate \n\n\n\nSlide template by NEUBIAS/ScopeM \n\n\n\nStep2: \n\n\n\na) Upload your presentation \n\n\n\nUpload your presentation to a drive of your choice. You can also use our Call4Help google drive. Note that files shared on our Call4Help drive will be available to everyone until the session is over. \n\n\n\nhttp://bit.ly/BIIF_C4H_Drive \n\n\n\nb) Upload example images for testing. \n\n\n\nUpload example images for testing either to the drive of your choice or our Call4Help google drive above. \n\n\n\nhttp://bit.ly/BIIF_C4H_Drive \n\n\n\nc) Register by filling out the registration form: \n\n\n\nhttp://bit.ly/BIIF_C4H_Registration \n\n\n\nStep 3: \n\n\n\nJoin the zoom-session. \n\n\n\nIf your problem is selected for presentation\, you will get a time-slot of 30 – 60 minutes within the session. \n\n\n\nWhat are the Deadlines \n\n\n\nSubmission of a problem and upload of example data: Friday the week before the session. \n\n\n\nNotification about participation: The day before the session. \n\n\n\nNext Call4Help session \n\n\n\nTuesday\, April 5\, 2022\, 9.00-12.00. Deadline for application: Friday\, April 1\, 2022.
URL:https://www.scilifelab.se/event/bioimage-analysis-support-call4help-3/
LOCATION:Online event via Zoom
CATEGORIES:Event
ORGANIZER;CN="Bioimage Informatics Unit":MAILTO:biif@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220405T120000
DTEND;TZID=Europe/Stockholm:20220405T130000
DTSTAMP:20260404T161244
CREATED:20220315T135352Z
LAST-MODIFIED:20220318T161436Z
UID:10000557-1649160000-1649163600@www.scilifelab.se
SUMMARY:Unbiased characterization of cells using the single-cell facility
DESCRIPTION:In the frame of the “SciLifeLab Site Umeå / KBC Infrastructure Seminar Series”\, Johan Henriksson\, Research fellow at the Dept. of Molecular Biology & Molecular Infection Medicine Sweden (MIMS)\, will present the Single-cell facility. If you want to learn how you can benefit from single-cell analysis\, join for 30 min presentation of cases & opportunities\, followed by 30 min discussion of practicalities & project design. \n\n\n\nPresenter:Johan Henriksson\, Dept. Molecular Biology / Molecular Infection Medicine Sweden (MIMS) \n\n\n\nRegistration:To register your physical attendance and reserve your free sandwich\, please go to the Registration Link \n\n\n\nRegistration\n\n\n\nPhysical Attendance:Glasburen seminar roomChemical Biological Centre (KBC) BuildingUmeå University \n\n\n\nOnline Attendance:You can join the seminar on Zoom:https://umu.zoom.us/j/63138997026
URL:https://www.scilifelab.se/event/unbiased-characterization-of-cells-using-the-single-cell-facility/
LOCATION:Glasburen Seminar Room\, Chemical Biological Centre (KBC) Building\, Umeå University\, Umeå\, 901 87\, Sweden
CATEGORIES:Event
ORGANIZER;CN="SciLifeLab Ume%C3%A5":MAILTO:umea@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220405T153000
DTEND;TZID=Europe/Stockholm:20220405T163000
DTSTAMP:20260404T161244
CREATED:20220321T101658Z
LAST-MODIFIED:20220321T101728Z
UID:10000563-1649172600-1649176200@www.scilifelab.se
SUMMARY:Sustainability in Science: My Green Lab
DESCRIPTION:Cristalle Ruiz\n\n\n\nMarket Development Representative\, My Green Lab  \n\n\n\nResearchers in all stages of their career are welcome to attend and could find the talk useful. Kindly feel free to extend the invitation to your home universities. \n\n\n\nMy Green Lab is an internationally recognised non-profit organisation run by scientists aimed at introducing sustainable laboratory practices across the globe. We can find out more about My Green Lab’s mission\, the highly successful ‘Ambassador programme’ and other resources available from Cristalle Ruiz\, Market Development Representative of My Green Lab. The talk is intended to provide valuable insight into sustainability in science and the steps that could be implemented in our labs. \n\n\n\nCristalle Ruiz is the Market Development Representative for My Green Lab\, the leading global nonprofit supporting laboratory sustainability. Her role is to bring awareness to the benefits of sustainable practices across laboratories and manufacturers of laboratory products through My Green Lab’s market-leading programs. In her previous position\, Cristalle advocated for implementing renewable energy in the United States. She holds a bachelor’s degree in Environmental Business and Economics from Rutgers University. She will discuss and provide resources to build a culture of sustainability in the science industry. \n\n\n\n  \n\n\n\n \n\n\n\n PhD & Postdoc council (phd-council@scilifelab.se)
URL:https://www.scilifelab.se/event/sustainability-in-science-my-green-lab/
LOCATION:Online event via Zoom
CATEGORIES:Event
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220408T090000
DTEND;TZID=Europe/Stockholm:20220408T093000
DTSTAMP:20260404T161244
CREATED:20220330T131410Z
LAST-MODIFIED:20220330T132843Z
UID:10000574-1649408400-1649410200@www.scilifelab.se
SUMMARY:[Clinical Talks]Seeing is believing\, unraveling the discovery of a centimeter-long macro-bacteria
DESCRIPTION:On April 8\, Dr. Jean-Marie Volland\, Scientist at Berkeley Lab and Laboratory for Research in Complex Systems (LRC Systems)\, and Shailesh Date\, CEO of LRC Systems (Adj. Assoc. Professor at UCSF)\,will talk about their recent discovery and characterization of the macro-bacteria Ca. Thiomargarita magnifica. The threadlike single-cell bacterium\, commonly found in the Caribbean Mangroves\, is visible to the naked eye\, and able to grow up to 2 centimeters in length. In a recent effort\, an international team studied the “magnificent” organism using fluorescence\, x-ray\, and electron microscopy\, and fully sequenced the genome.  \n\n\n\nThrough a unique strategy of polyploidy\, along with compartmentalization of genomic material and protein synthesis in membrane-bound organelle\, the organism has been able to grow orders of magnitude over the theoretical limits for bacterial cells. The traditional view\, which has almost become dogmatic\, is that prokaryotes (bacteria and single-cell microbes) have free-floating DNA\, whereas eukaryotes (yeast and multicellular organisms) package their DNA in a nucleus. This new model organism blurs that line and offers amazing potential insights into biological evolutionary strategies\, many of which are as yet unexplored. One can only wonder at the type and number of new clinical innovations that will emerge as we continue exploring the frontiers of biology and biological complexity. \n\n\n\nRegister to receive zoom link\n\n\n\n  \n\n\n\n\n\n\n\nJean-Marie Volland is a Scientist at Lawrence Berkeley National Laboratory (Berkeley Lab) and at Laboratory of Research in Complex Systems (LRC Systems) in Menlo Park California. He obtained his PhD at the Université des Antilles\, in the French West Indies\, studying biology and tropical ecology in the Indian Ocean and Caribbean. Jean-Marie then continued to pursue his Postdoctoral research at University of Vienna\, Austria during 2012-2017. Initially in the Monika Bright´s Lab at the Department of Limnology and Biological Oceanography studying symbiosis in chemosynthetic ecosystems\, and then also in the Silvia Bulgheresi´s Lab at the Archea Biology and Ecogenomics Division studying tropical ecology pathways of microorganisms. In 2018 Jean-Marie joined the Berkeley Lab as an affiliate Scientist to continue working on uncovering highly divergent forms of life together with LRC Systems. The story of the discovery of Thiomargarita magnifica dates back a decade ago\, when marine biologist Olivier Gros\, from the Université of Antilles\, first discovered microbial filaments on leaves buried in the mangrove of Guadeloupe. Gros lab member and microbiologist colleague Silvina González-Rizzo identified it to be in fact be one bacterium. Jean-Marie\, together with his Université of Antilles colleagues and LRC Systems set forth to methodologically study and categorize the new organism. \n\n\n\n\n\n\n\nShailesh Date is the CEO and Founder of Laboratory for Research in Complex Systems (LRC Systems). He is also Adjunct Professor of Biology at San Francisco State University and an Associate Adjunct Professor of Epidemiology and Biostatistics at the University of California San Francisco (UCSF). Shailesh obtained his PhD at The University of Texas\, Austin in Molecular Biology in 2004\, and completed a postdoctoral fellowship at the University of Pennsylvania School of Medicine in 2008\, focusing on computational biology of infectious diseases. Between 2008-2015\, Shailesh worked as a scientist at Genentech\, and during a brief sabbatical in 2013\, completed the prestigious Ignite Program at the Stanford Graduate School of Business. He left Genentech in 2015 to join Global Viral (GV)\, a nonprofit organization with roots in public health research. He founded the LRC Systems in 2019\, transforming Global Viral into a new organization focused on complex systems research in a wide variety of areas. \n\n\n\nAbout Global Viral and LRC SystemsGlobal Viral was founded by Nathan Wolfe in 2007 as the Global Viral Forecasting Initiative (GVFI)\, focusing on public health and field epidemiology while supporting programs like HIV prevention run by USAID\, WHO and other similar organizations in Africa and South East Asia.In 2012\, the organization split into Metabiota\, a for-profit company that took over epidemiology and forecasting-related work\, and Global Viral\, a nonprofit that retained and concentrated on basic research.In 2019\, under the leadership of a new Chief Executive and a new board\, the organization reoriented its research towards complex systems and adopted the “Laboratory for Research in Complex Systems (LRC Systems)”\, which was initially founded as a new division within GV\, as its new name.https://www.lrc.systems \n\n\n\n\n\n\n\n\n“Clinical Talks” has been renewed for yet another exciting\, innovative\, and enlightening season. This season will focus on sustainable innovations within Life Sciences\, that have the potential to contribute to a better climate friendly future for our future generations. Also new this year is that the seminar is co-organized in a collaboration between SciLifeLab and KI Innovations . \n\n\n\nSeason 5\, will be held September 2021 until March 2022 with scheduled Talks\, during Friday mornings 09-09:30 am via ZOOM (with some time-zone friendly adjustments for our international speakers). Each session consists of a talk given by our invited speaker followed by Q&A. The seminar is an open educational seminar series for our ever-expanding Life Science community.
URL:https://www.scilifelab.se/event/seeing-is-believing-unraveling-the-discovery-of-ca-thiomargarita-magnifica-a-centimeter-long-macro-bacteria/
LOCATION:Online event via Zoom
CATEGORIES:Event
ORGANIZER;CN="Clinical Talks":MAILTO:precisionmedicine@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220411T151500
DTEND;TZID=Europe/Stockholm:20220411T161500
DTSTAMP:20260404T161244
CREATED:20220315T160745Z
LAST-MODIFIED:20220404T080634Z
UID:10000558-1649690100-1649693700@www.scilifelab.se
SUMMARY:Decreased levels of oxygen radicals cause autoimmune disease.
DESCRIPTION:Prof. Rikard Holmdahl \n\n\n\nKarolinska Institute\, Sweden \n\n\n\nRegister HERE\n\n\n\nRikard Holmdahl made his PhD (1985) and MD (1987) at Uppsala University. Professor in medical inflammation research Lund University 93-07. Professor at Karolinska Institute from 2008 \n\n\n\n\n\n\n\nVenue: Hybrid meeting – Trippelrummet\, Navet and zoom \n\n\n\n\n\n\n\n\n\n \n\n\n\nTitle of the seminar: Finding and understanding genes associated with common diseases; decreased levels of oxygen radicals cause autoimmune disease\n\n\n\nA long-standing challenge is to understand which genes that cause common complex diseases\, such as rheumatoid arthritis\, atherosclerosis or cancer\, and thereby understand the disease causes. However\, even though we know the human sequence and can genotype millions of individuals it is very difficult to conclusively identify the single nucleotide variants that cause the diseases. We have taken another approach through animal models. Both genetics and diseases show similarities with humans\, and we have shown that it is possible to not only identify the loci associated with disease but also exactly position the polymorphic nucleotides for common autoimmune diseases such as rheumatoid arthritis (RA) and systemic lupus erythematosus (SLE).  \n\n\n\nI will focus on the first gene that we cloned\, Ncf1\, which regulate immune tolerance through different levels of oxygen radicals\, or more precisely hydrogen peroxide. It is the major gene causing SLE and is important in Sjögren’s syndrome and RA and most likely most autoimmune disease. \n\n\n\nTo understand the role of Ncf1 is also complicated as peroxide seem to regulate many different pathways leading to autoimmune diseases. I will discuss how we think it regulates RA and SLE but also how it could explain our normal behaviour\, thus explaining why Ncf1 variants are common in both rat and human population. \n\n\n\nRead more about ikard Holmdahl´s research http://ki.se/en/mbb/research-division-of-medical-inflammation-research
URL:https://www.scilifelab.se/event/decreased-levels-of-oxygen-radicals-cause-autoimmune-disease/
LOCATION:Navet\, SciLifeLab Uppsala\, SciLifeLab Uppsala\, BMC C11\, Husargatan 3\, Uppsala\, 75237\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/02/Picture1-The-Svedberg.png
ORGANIZER;CN="The Svedberg Seminar Series":MAILTO:thesvedberg@scilifelab.uu.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220412T003000
DTEND;TZID=Europe/Stockholm:20220412T010000
DTSTAMP:20260404T161244
CREATED:20220412T121106Z
LAST-MODIFIED:20220715T121407Z
UID:10000582-1649723400-1649725200@www.scilifelab.se
SUMMARY:γδSTO workshop –  Mini-symposium of Stockholm’s γδ T cell community
DESCRIPTION:A workshop on the May 5\, on gamma delta T cells for our scientific community in Stockholm. Different labs from SciLifeLab\, KI (Solna and Fleminsberg) and Stockholm University are invited. \n\n\n\nProgram: \n\n\n\n13:15 / Introduction \n\n\n\nTaras Kreslavskiy(KI): Transcriptome-wide screen for γδTCR specificities identifies a novel superantigen-like ligand candidate for Vγ7 γδTCRs \n\n\n\nLola Boutin (KI): Evaluation of the potential of using non-conventional (NC) T cell- based immunotherapy in Medulloblastoma \n\n\n\nPatrick Sandoz (KTH): Dynamics of Vγ9Vδ2 T cell cytotoxic functions at the single-cell level \n\n\n\n14:30 / Coffee break \n\n\n\nFaisal Alagrafi (KI):γδ T cells reconstitution in long term survivors after hematopoietic stem cell transplantation \n\n\n\nClàudiaArasa(SU): Functional characteristics of γδ T cells in prematurity and early life\, and their response to staphylococcal enterotoxins \n\n\n\nJulius Lautenbach (KI): Systems level analysis indicates an interplay between cytophilic antibodies\, monocytes\, and γδ T cells in malaria tolerance \n\n\n\n16:15 / Drinks and Discussion (γ2 lunchroom)
URL:https://www.scilifelab.se/event/%ce%b3%ce%b4sto-workshop-mini-symposium-of-stockholms-%ce%b3%ce%b4-t-cell-community/
LOCATION:Navet\, SciLifeLab Uppsala\, SciLifeLab Uppsala\, BMC C11\, Husargatan 3\, Uppsala\, 75237\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/03/infrastructure.png
ORGANIZER;CN="SciLifeLab Data Centre":MAILTO:datacentre@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220413T151500
DTEND;TZID=Europe/Stockholm:20220413T164500
DTSTAMP:20260404T161244
CREATED:20220315T132014Z
LAST-MODIFIED:20220331T120240Z
UID:10000555-1649862900-1649868300@www.scilifelab.se
SUMMARY:SciLifeLab COVID-19 seminar: Jinal Bhiman and Vicent Pelechano
DESCRIPTION:Topic: Detection of virus \n\n\n\nThe second SciLifeLab COVID-19 seminar this spring starts with Jinal Bhiman\, PhD and Scientific lead for the Global Immunology and Immune Sequencing South Africa (GIISER-SA)\, talking about SARS-CoV-2 viral evolution in South Africa and hybrid immunity profiles. Vicent Pelechano\, PhD\, SciLifeLab and Wallenberg Academy Fellow and Principal Researcher at Karolinska Institutet\, then continues the seminar with his talk on Development of LAMP-based point of care strategies for simplified SARS-CoV-2 detection \n\n\n\n\n\n\n\nSchedule \n\n\n\n15:15- 16:00 – SARS-CoV-2 viral evolution in South Africa and hybrid immunity profiles                        Jinal Bhiman\, PhD and Scientific lead for the Global Immunology and Immune Sequencing South Africa (GIISER-SA)16:00-16:45 – Development of LAMP-based point of care strategies for simplified SARS-CoV-2 detection                       Vicent Pelechano\, PhD\, SciLifeLab and Wallenberg Academy Fellow and Principal Researcher at Karolinska Institutet\n\n\n\n\n\n\n\nRegistration is mandatory to get the Zoom link for the event  \n\n\n\n\nREGISTRATION\n\n\n\nBIOS & ABSTRACTS
URL:https://www.scilifelab.se/event/scilifelab-covid-19-seminar-jinal-bhiman-and-vicent-pelechano-online/
LOCATION:Online event via Zoom
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2021/05/covid_3d_model-min-1536x864-1.jpg
END:VEVENT
END:VCALENDAR