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DTSTART;TZID=Europe/Stockholm:20230310T090000
DTEND;TZID=Europe/Stockholm:20230310T093000
DTSTAMP:20260403T230232
CREATED:20230130T170847Z
LAST-MODIFIED:20230223T120445Z
UID:10000795-1678438800-1678440600@www.scilifelab.se
SUMMARY:[Clinical Talks] The PONCH study
DESCRIPTION:The PONCH Study of the influence of diet\, obesity and gestational diabetes (GDM) on maternal and child metabolic health\n\n\n\nUlrika Andersson Hall\n\n\n\nUniversity of Gothenburg \n\n\n\n\n\n\n\nUlrika is currently an associate professor and project manager of the Pregnancy Obesity Nutrition and Child Health (PONCH) study headed by professor Agneta Holmäng at the Institute of Neuroscience and Physiology\, Sahlgrenska Academy\, University of Gothenburg. Ulrika has an MSc in Molecular Biotechnology from Uppsala University and a PhD in Biochemistry from Oxford University. In 2015\, after post-doctoral positions at the Medical Research Center of Imperial College\, London\, and at the Department of Food and Nutrition and Sport Science\, University of Gothenburg\, she joined the PONCH group. She now runs the PONCH study focusing on maternal and child metabolic health during and after pregnancy\, but has also added other branches to the study\, particularly with focus on the transition from gestational diabetes to type-2-diabetes. \n\n\n\nThe PONCH study: \n\n\n\nPONCH started in 2009 and is an ongoing prospective\, longitudinal study investigating the influence of diet\, obesity and gestational diabetes (GDM) on maternal and child metabolic health. The specific aims of PONCH are to better understand how body composition\, insulin resistance and energy metabolism change during and after pregnancy in women of normal body weight\, with obesity or with GDM\, and how this affects the body composition and health of their children. Another important aim is to evaluate insulin resistance after GDM in order to better be able to predict the development of type-2-diabetes in these women. Here\, we also investigate the effect of life-style factors in the transition from GDM to type-2-diabetes. Our hope is that the research will influence future clinical care of women with GDM. \n\n\n\n \n\n\n\n \n\n\n\nregister to receive zoom link\n\n\n\nModerator: Päivi Östling\, SciLifeLab \n\n\n\n\n\n\n\n \n\n\n\nClinical Talks\n\n\n\nClinical Talks is back for more! With a brand new and shiny Season 6. After successfully completing 5 seasons with > 70 enthusiastic Clinical Talkers to our record\, we have barely scratched the surface of all the amazing work our clinical\, academic and industry Life Science community has to offer. More about the upcoming events is available here. \n\n\n\nThese events are co-organized by Karolinska Institutet Innovations AB and SciLifeLab\, and brought to you by Colibri Ventures.
URL:https://www.scilifelab.se/event/clinical-talks-the-ponch-study/
LOCATION:Online event via Zoom
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/08/Square-500x500-Clinical-Talks@4x.png
ORGANIZER;CN="Clinical Talks":MAILTO:precisionmedicine@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230309T120000
DTEND;TZID=Europe/Stockholm:20230309T130000
DTSTAMP:20260403T230232
CREATED:20230101T204942Z
LAST-MODIFIED:20230302T104149Z
UID:10000765-1678363200-1678366800@www.scilifelab.se
SUMMARY:Campus Solna Seminar Series: Jian Wu and Marcel Tarbier
DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an  initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nThis week:\n\n\n\n\n\n\nJian Wu\n\n\n\nStefania Giacomello – alpha 3 \n\n\n\nVisualization and analysis of spatial transcriptomics data: a geometric approach \n\n\n\n\n\nMarcel Tarbier\n\n\n\nVicent Pelechano – gamma 5 \n\n\n\nImputing cell features from molecular profiling: what we can learn from treating single cells as individuals \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page.
URL:https://www.scilifelab.se/event/campus-solna-seminar-series-mar-9/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Community
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/09/IMG_20221103_124630107_HDR-scaled.jpg
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230308T131500
DTEND;TZID=Europe/Stockholm:20230308T163500
DTSTAMP:20260403T230232
CREATED:20230202T161857Z
LAST-MODIFIED:20230208T083607Z
UID:10000801-1678281300-1678293300@www.scilifelab.se
SUMMARY:Advanced fluorescence microscopy symposium – FLIM\, FRET\, FCS & TauSTED applications
DESCRIPTION:The Advanced Light Microscopy facility welcomes you to a symposium on FLIM\, FRET\, FCS and Tau-STED fluorescence microscopy applications. \n\n\n\nAGENDA\n\n\n\n13:15Fast Lifetime CONtrast imaging (FALCON)Daniel Smeets – Leica Microsystems \n\n\n\n13:45Biophysical FLIM applicationsFranziska Ragaller –  SciLifeLab \n\n\n\n14:15FLIM on caveolaeBjörn Morén – Umeå University \n\n\n\nCoffee break \n\n\n\n15:05FRET/FLIM on biological membranesRadek Šachl – J. Heyrovský Institute of Physical Chemistry \n\n\n\n15:35Biophysical FCS applicationsErdinc Sezgin – SciLifeLab \n\n\n\n16:05Five color nanoscopy by Tau-STED and Phasor lifetime unmixingMariano Gonzalez Pisfil – Ludwig-Maximilians-Universität München \n\n\n\nRegistration\n\n\n\nPlease submit your registration via e-mail to: hans.blom@scilifelab.se
URL:https://www.scilifelab.se/event/advanced-fluorescence-microscopy-symposium-flim-fret-fcs-tausted-applications/
LOCATION:Inghesalen\, Tomtebodavägen 18a\,\, Solna\, 171 65 171 65\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2023/02/Image-.png
ORGANIZER;CN="Advanced Light Microscopy Unit":MAILTO:stewen@kth.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230307T090000
DTEND;TZID=Europe/Stockholm:20230308T123000
DTSTAMP:20260403T230232
CREATED:20230112T102524Z
LAST-MODIFIED:20230306T103020Z
UID:10000789-1678179600-1678278600@www.scilifelab.se
SUMMARY:EASI-Genomics stakeholder meeting
DESCRIPTION:EASI-Genomics is an EU-funded consortium of sixteen partners\, including eleven of the largest genomic facilities in Europe\, which provides easy and seamless access to state-of-the-art DNA sequencing technologies to researchers from academia and industry within a framework that ensures compliance with ethical and legal requirements\, as well as FAIR and secure data management (https://www.easi-genomics.eu). \n\n\n\nOn March 7th-8th\, EASI-Genomics will organize a hybrid event for stakeholders from the scientific community (https://www.easi-genomics.eu/stories/events). The event will feature speakers from Transnational Access-user\, industry and EASI-Genomics facilities. Participation is free of charge. \n\n\n\nRegistration\n\n\n\nEvent homepage\n\n\n\n\n\n\n\n\n\n\n\nThis project has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No 824110
URL:https://www.scilifelab.se/event/easi-genomics-stakeholder-meeting/
LOCATION:Inghesalen\, Tomtebodavägen 18a\,\, Solna\, 171 65 171 65\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2023/01/easi.png
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230306T140000
DTEND;TZID=Europe/Stockholm:20230306T160000
DTSTAMP:20260403T230232
CREATED:20230213T125155Z
LAST-MODIFIED:20230303T090629Z
UID:10000808-1678111200-1678118400@www.scilifelab.se
SUMMARY:Networking Meeting Between the Wallenberg Programs WASP-HS and Data-Driven Life Science (DDLS)
DESCRIPTION:The purpose of this on-line meeting is to explore opportunities for joint and multidisciplinary research ventures between researchers working within data-driven life science and researchers from the humanities and social sciences working on Artificial Intelligence and Autonomous Systems. The meeting is divided in two parts\, one with focus on information\, where an upcoming call for seed-money for cross-program research collaborations will be announced and one part with focus on networking. \n\n\n\n \n\n\n\nAGENDA \n\n\n\n \n\n\n\n14:00-15:00 Information \n\n\n\n\n           Presentation of  WASP-HS\, Bodil Formark (Program Coordinator WASP-HS) and DDLS\, Erik Kristiansson (DDLS Steering Group)\n\n\n\n           Information about the new call for seed-money\, Erik Kristiansson (DDLS Steering Group)\n\n\n\n           Presentation of previous call\, Francis Lee (WASP-HS Management Team)\n\n\n\n          Q/A\n\n\n\n\n15:00-15.30 Networking  \n\n\n\nPossibilites to interact with researchers within the fields of WASP-HS and DDLS Heidi Howard (ELSI-expert DDLS) \n\n\n\n \n\n\n\nRegister here
URL:https://www.scilifelab.se/event/networking-meeting-between-the-wallenberg-programs-wasp-hs-and-data-driven-life-science-ddls/
LOCATION:Online event via Zoom
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230301T130000
DTEND;TZID=Europe/Stockholm:20230301T150000
DTSTAMP:20260403T230232
CREATED:20230208T090251Z
LAST-MODIFIED:20230210T062543Z
UID:10000806-1677675600-1677682800@www.scilifelab.se
SUMMARY:Open Hearing: Gothenburg Phenomics – Proof of Concept Project Invitation
DESCRIPTION:The aim is to establish proof-of-concept for life science research with expressed (pre-)clinical relevance. This will be achieved by forming a closed loop from biomedical research question (initiated by pre-clinical researchers) to returning actionable biological results\, in terms of mechanisms and potential biomarkers and targets. \n\n\n\nIn this open hearing we would like to identify preclinical and clinical research questions where samples and data are available for proof of concept for a combined metabolomics/proteomics/data analysis study. We will coordinate data deliveries from platforms to data storage via inferential analysis and extraction of biomarkers and mechanisms of interest go from compute and back to the biomedical researcher (question owner). \n\n\n\nRegistration and more information
URL:https://www.scilifelab.se/event/open-hearing-gothenburg-phenomics-proof-of-concept-project-invitation/
LOCATION:Arvid Carlsson Lecture Hall\, Sahlgrenska Academy\, University of Gothenburg\, Medicinaregatan 3\, Gothenburg\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2023/02/Phenomics-hearing-220301.png
ORGANIZER;CN="SciLifeLab Gothenburg":MAILTO:gothenburg@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230228T100000
DTEND;TZID=Europe/Stockholm:20230228T110000
DTSTAMP:20260403T230232
CREATED:20230215T120519Z
LAST-MODIFIED:20230215T121217Z
UID:10000810-1677578400-1677582000@www.scilifelab.se
SUMMARY:OpenUC2: From Ideas to Globally Accessible Instruments
DESCRIPTION:Speaker: Benedict Diederich\, Leibniz IPHT Jena \n\n\n\nPandemics\, extinction of species\, and antibiotic crises: These are not dystopian scenarios of the distant future\, but current\, observable problems that people globally are now trying to deal with. Science is responsible here for guiding the path\, researching connections on a global level and disseminating its findings. However\, technical expertise and financial investments in laboratory equipment and experiments are often limiting factors. What follows from this is the lack of accessibility to the scientific tools necessary for researching socially relevant topics. \n\n\n\n“Frugal Science” thinks of scientific instruments from a whole new perspective. Limited by the available budget and parts\, one has to get creative to solve a scientific question posed by society. Following this idea\, we have applied this method to the – in many situations – costly field of microscopy to provide a deeper insight into the microcosm for everyone\, everywhere. With our modular\, open-source optics toolbox UC2 (You.See.Too.)\, we provide teaching materials in STEM subjects and put powerful optical tools in the hands of those who need them most: Biologists\, Chemists\, Physicists\, Computational scientists\, and students. We prove its capabilities as a rapid prototyping tool for optics by rapidly developing a new method to capture large amounts of plankton in 3D using a light sheet and a holographic setup. The “HoLiSheet” costs less than the laptop that processes the data and is fully open-source.
URL:https://www.scilifelab.se/event/openuc2-from-ideas-to-globally-accessible-instruments/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2023/02/xavier.jpg
ORGANIZER;CN="Xavier Casas":MAILTO:xavier.casas@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230223T120000
DTEND;TZID=Europe/Stockholm:20230223T130000
DTSTAMP:20260403T230232
CREATED:20230101T203910Z
LAST-MODIFIED:20230127T090332Z
UID:10000763-1677153600-1677157200@www.scilifelab.se
SUMMARY:Campus Solna Seminar Series: Matilda Holm and Stefan Wennmalm & Steven Edwards
DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an  initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nThis week:\n\n\n\n\n\n\nMatilda Holm\n\n\n\nCecilia Williams – alpha 2 \n\n\n\nExploring the impact of intestinal ERβ on the colonic immune microenvironment. \n\n\n\n\n\nStefan Wennmalm & Steven Edwards\n\n\n\nHans Blom – gamma 3 \n\n\n\nSingle molecule analysis of membrane proteins with FCS-FRET and Expansion microscopy using genetic code expanded bioorthogonal labelling \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page.
URL:https://www.scilifelab.se/event/campus-solna-seminar-series-feb-23/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Community
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/09/IMG_20221103_123412496_HDR2-scaled.jpg
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230223T093000
DTEND;TZID=Europe/Stockholm:20230223T103000
DTSTAMP:20260403T230232
CREATED:20230221T102059Z
LAST-MODIFIED:20230221T102100Z
UID:10000815-1677144600-1677148200@www.scilifelab.se
SUMMARY:Identification of novel functional and genetic interactions of the Bloom syndrome helicase
DESCRIPTION:Andrew Blackford\, Associate Professor at University of Oxford
URL:https://www.scilifelab.se/event/identification-of-novel-functional-and-genetic-interactions-of-the-bloom-syndrome-helicase/
LOCATION:Gamma 2 Lunchroom\, SciLifeLab\, Tomtebodavägen 23\, Solna\, Sweden
CATEGORIES:Community
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230221T120000
DTEND;TZID=Europe/Stockholm:20230221T130000
DTSTAMP:20260403T230232
CREATED:20230215T123358Z
LAST-MODIFIED:20230215T141858Z
UID:10000811-1676980800-1676984400@www.scilifelab.se
SUMMARY:MAX IV new users: introduction and updates - Alexandr Talyzin
DESCRIPTION:In the frame of the “SciLifeLab Site Umeå / KBC Infrastructure Seminar Series”\, the seminars will be organised every second Tuesday during spring 2023. The seminars will be held in a hybrid format IRL in Glasburen\, KBC\, and online via Zoom. Take the chance to get information on facilities\, possibilities and services that infrastructure\, both SciLifeLab-associated and local\, can offer! Learn more about the seminar series and Schedule for Spring 2023 here. \n\n\n\nOn February 21st\, 12:00-13:00\, SciLifeLab Site Umeå / KBC Infrastructure Seminar Series presents: \n\n\n\nMAX IV for new users: introduction and updates \n\n\n\nby Alexandr Talyzin\, Associate professor at the Department of Physics\, Umeå University \n\n\n\nAbstract\n\n\n\nThe main purpose of my presentation is to encourage more users (physics\, chemistry and bioscience) to submit proposals to the MAX IV synchrotron facility. I will provide short summary of available beamlines and access schemes and give some advice related to the preparation of proposals. Some recent research highlights will be used to illustrate the possibilities of MAX IV in all branches of science. The presentation is addressed first of all to new users\, but it could be of interest to everybody interested in exploring research possibilities at MAX IV. The next call has a deadline on the 7th of March 2023\, and it is now the right time to prepare proposals. Currently\, 16 beamlines are opened for standard proposals. Some beamlines are still under construction\, and some beamlines are expanding the range of their experimental possibilities with every call. Therefore\, it is important to follow updates and learn about current opportunities. \n\n\n\nJoin for 30 min presentation\, followed by 15 min questions. \n\n\n\nRegistration: Sign up (latest by Monday\, 20 February\, 10 a.m.) for on-site attendance to reserve your free lunch sandwich: \n\n\n\nRegistration\n\n\n\nor follow online via Zoom: https://umu.zoom.us/j/63138997026 (registration is not required). \n\n\n\nOrganisers: SciLifeLab Site Umeå and Chemical Biological Centre (KBC)
URL:https://www.scilifelab.se/event/new-users-introduction-and-updates-alexandr-talyzin/
LOCATION:Glasburen Seminar Room\, Chemical Biological Centre (KBC) Building\, Umeå University\, Umeå\, 901 87\, Sweden
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230221T110000
DTEND;TZID=Europe/Stockholm:20230221T123000
DTSTAMP:20260403T230232
CREATED:20230203T114204Z
LAST-MODIFIED:20230204T142309Z
UID:10000803-1676977200-1676982600@www.scilifelab.se
SUMMARY:FAIRPoints-FAIRPoints ‘Ask me Anything’ (AMA)
DESCRIPTION:Location: Online via Zoom \n\n\n\n\n\nFAIRPoints ‘Ask Me Anything’ on Software and Workflows\n\n\n\nThis event is part of a series of “Ask Me Anything”-style events featuring keynote speakers from the RDA\, and EOSC groups focused on RDA activities and EOSC solutions in relation to FAIR implementation and Open practices in Science. \n\n\n\nFebruary\n\n\n\nThe theme of this session is “FAIRPoints ‘Ask Me Anything’ on Software and Workflows.” We will be discussing the FAIRification of software and workflows  and how it looks like\, the available tools/infrastructures that support this process\, why FAIRification is important and how it is applicable to researchers. Speakers include Carole Goble and Paula Martinez.  \n\n\n\nThe events will bring together speakers from the RDA Groups and speakers from a related EOSC service to describe how their work aligns\, how it connects to the research community\, and how it benefits the research community in a way that is directly related to the implementation of FAIR and Open research practices. The events are beginner-friendly\, laid-back\, and easy to follow\, with moderators driving the discussion\, posing questions to our speakers\, and inviting audience questions. Finally a selection of questions will be gathered and turned into Google Educational Q&A flashcards (https://schema.org/QAPage) for future reference. \n\n\n\nFAIRPoints ‘Ask me Anything’ (AMA) event series on FAIR implementation and Open practices in Science\, is hosted by FAIRPoints and supported by RDA\, EOSC\, FDO\, GOFAIR-US & SciLifeLab-DataCentre.  \n\n\n\nThemeTypeDateSpeakerModeratorFAIR software and WorkflowsEventFebruary 21st 2023Carole GoblePaula MartinezTBATBAIdentifiersRecordingJanuary 26th 2023Maggie HellströmNabil KsibiMatthew BuysNatasha SimonsPeter WittenbergPatricia HerterichMachine Centric Science PodcastJanuary 2023Christophe Blanchi listen hereDonny WinstonFAIR Data PodcastPodcastJanuary 18th 2023Tibor Kalman and Sven Bingert listen hereRory MacneilRegulatory Processes and GovernanceEventApril 27th 2023TBATBAMachine ActionabilityEventMay 25th 2023TBATBAEquitable and Transparent Access to Information and KnowledgeEventSeptember 28th 2023\n\n\n\n\n\n\n\nRegister here\n\n\n\nSign up for future events here \n\n\n\nTwitter: @FAIR_Points
URL:https://www.scilifelab.se/event/fairpoints-fairpoints-ask-me-anything-ama-2/
LOCATION:Online event via Zoom
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230217T140000
DTEND;TZID=Europe/Stockholm:20230217T150000
DTSTAMP:20260403T230232
CREATED:20230201T084626Z
LAST-MODIFIED:20230201T115440Z
UID:10000797-1676642400-1676646000@www.scilifelab.se
SUMMARY:Ultrasensitive-and-digital sequencing and infrastructure activities within Genomic Medicine Sweden
DESCRIPTION:During this seminar\, Prof. Anders Ståhlberg\, Professor in Clinical Genomics at University of Gothenburg\,  will showcase the applications of ultrasensitive and digital sequencing. Per Sikora\, Co-Chair of the Informatics and and Infrastructure at Genomic Medicine Sweden (GMS) as well as part of the GMS management group\, will give us an update of the GMS working package related to Informatics and Infrastructure \n\n\n\nRead more\n\n\n\nThe presenters:\n\n\n\nAnders Ståhlberg: Professor in Clinical Genomics at GU\, has an extensive expertise within cancer\, diagnostics and molecular techniques\, especially NGS and single cell analysis. Anders leads the Translational Genomic Platform that aims to implement ultrasensitive DNA and RNA analyses in clinical routine \n\n\n\nPer Sikora: Co-Head of Bioinformatics and Data Center at GU\, Head 1st engineer at the Sahlgrenska University Hospital and Co-Chair of the Informatics and and Infrastructure at GMS as well as part of the management group in Genomic Medicine Sweden \n\n\n\nHost/moderator\n\n\n\nMarcela Dávila\, Co-Head of the Bioinformatics and Data Centre and Head of Clinical Genomics Gothenburg
URL:https://www.scilifelab.se/event/webinar-ultrasensitive-and-digital-sequencing-and-infrastructure-activities-witin-genomic-medicine-sweden/
LOCATION:Online event via Zoom
CATEGORIES:Event
ORGANIZER;CN="SciLifeLab Gothenburg":MAILTO:gothenburg@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230216T120000
DTEND;TZID=Europe/Stockholm:20230216T130000
DTSTAMP:20260403T230232
CREATED:20230101T203437Z
LAST-MODIFIED:20230127T090010Z
UID:10000762-1676548800-1676552400@www.scilifelab.se
SUMMARY:Campus Solna Seminar Series: Mariam Haffa and Davide Buzzao
DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an  initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nThis week:\n\n\n\n\n\n\nMariam Haffa\n\n\n\nBrinton Seashore-Ludlow – alpha 4 \n\n\n\nCancer – adipocyte interactions: Targetable vulnerabilities in ovarian cancer? \n\n\n\n\n\nDavide Buzzao\n\n\n\nEric Sonnhammer – gamma 7 \n\n\n\nA generalized benchmark for all types of enrichment analysis methods. \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page.
URL:https://www.scilifelab.se/event/campus-solna-seminar-series-feb-16/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Community
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/09/IMG_20221103_124630107_HDR-scaled.jpg
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230214T120000
DTEND;TZID=Europe/Stockholm:20230214T130000
DTSTAMP:20260403T230232
CREATED:20230120T101420Z
LAST-MODIFIED:20230207T103736Z
UID:10000793-1676376000-1676379600@www.scilifelab.se
SUMMARY:FunCoup network analysis workshop
DESCRIPTION:Network biology is a new paradigm to understand the complex interactions of the molecules in an organism using an integrative and systems approach. This workshop is intended for scientists interested in learning more about and applying network analysis in their research. We will describe and demonstrate the comprehensive network database FunCoup (https://funcoup.sbc.su.se/) and show how it can be used to answer various research questions at the systems biology level.  \n\n\n\n\n\n\n\n \n\n\n\nPROGRAM: \n\n\n\n1. Introduction to FunCoup and its unique features for analyzing functional coupling between genes/proteins\, as well as accompanying analysis tools such as PathBIX and MaxLink. \n\n\n\n2. Demonstration of FunCoup and accompanying tools\, as well as programmatic usage of FunCoup in an R notebook. \n\n\n\n\n\nRegistration\n\n\n\nLink to zoom
URL:https://www.scilifelab.se/event/funcoup-network-analysis-workshop/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Course
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230214T100000
DTEND;TZID=Europe/Stockholm:20230214T120000
DTSTAMP:20260403T230232
CREATED:20230118T154441Z
LAST-MODIFIED:20230213T082420Z
UID:10000787-1676368800-1676376000@www.scilifelab.se
SUMMARY:TissUUmaps 3: Interactive visualization and quality assessment of large-scale spatial omics
DESCRIPTION:We present TissUUmaps\, browser-based tool for GPU-accelerated visualization and interactive exploration of tens of millions of datapoints overlaying tissue samples. Users can visualize markers and regions\, explore spatial statistics and quantitative analyses of tissue morphology\, and assess the quality of decoding in situ transcriptomics data. TissUUmaps provides instant multi-resolution image viewing\, can be customized\, shared\, and also integrated in Jupyter Notebooks. It is also possible to directly connect spatial markers with markers in feature space\, such as UMAP plots\, to interactively relate feature space with physical space. TissUUmaps was created in collaboration between BIIF and the Wählby lab. You can read more about it and test the software on its web page: https://tissuumaps.github.io/ \n\n\n\nDuring the seminar\, we will specifically showcase new features of TissUUmaps 3.1\, such as: \n\n\n\n\nHDF5 / AnnData files loading\n\n\n\nNetwork diagram visualization\n\n\n\nMultiple datasets displayed on a grid\n\n\n\nPlugin engine\n\n\n\n\nThe webinar will be given by Christophe Avenel and Fredrik Nysjö. \n\n\n\n 
URL:https://www.scilifelab.se/event/tissuumaps-3-interactive-visualization-and-quality-assessment-of-large-scale-spatial-omics-2/
LOCATION:Online event via Zoom
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2023/01/tissuumaps_webinar.jpg
ORGANIZER;CN="Bioimage Informatics Unit":MAILTO:biif@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230210T090000
DTEND;TZID=Europe/Stockholm:20230210T093000
DTSTAMP:20260403T230232
CREATED:20230130T122543Z
LAST-MODIFIED:20230130T122829Z
UID:10000794-1676019600-1676021400@www.scilifelab.se
SUMMARY:[Clinical Talks] A co-creation engine for the next Generation Life Science ventures
DESCRIPTION:Bobby Kaura\n\n\n\nSeed Investment\, Global Entrepreneurial & Ecosystem Development @ Illumina For Startups \n\n\n\nIllumina Inc.At Illumina\, we’re committed to unlocking the power of the genome\, and we know we can’t do it alone. Illumina for Startups is our way of accelerating innovation in the entrepreneurial community by partnering with leading venture capital investors and entrepreneurs to create\, launch and grow genomics startups. Together\, we’re advancing breakthrough applications in genomics\, including therapeutics\, diagnostics\, agriculture\, synthetic biology\, software and direct-to-consumer applications. \n\n\n\nIllumina Accelerator is a company creation engine co-located with Illumina research and development sites in San Francisco Bay Area and Cambridge\, UK. Since inception\, Illumina Accelerator has invested in 70+ genomics startups from across the globe\, which have collectively raised over $1 billion in venture capital funding. Approximately 93% of Illumina Accelerator investments have gone on to raise additional capital from leading investors. \n\n\n\nOther global models to catalyse genomics startups include the following initiatives: Sequoia Capital China Intelligent Healthcare Genomics Incubator powered by Illumina\, Illumina for Start-ups Australia\, Illumina for Start-ups Singapore\, Illumina for Start-ups Grants\, and Illumina for Start-ups Networks. \n\n\n\nMultiplAI HealthMultiplAI is a biotech startup developing universal genomic screening for cardiovascular diseases using RNA sequencing and machine learning. They are bringing liquid biopsy to cardiovascular disease. They have a proprietary laboratory-validated prototype and are conducting pilot clinical studies aiming to achieve initial clinical validation of their whole-blood liquid biopsy approach in the cardiovascular space. MultiplAI is based in London\, UK\, with clinical and lab operations in Cambridge\, UK\, and Buenos Aires\, Argentina. MultiplAI Health has attended the Illumina Accelerator program. \n\n\n\n\n\n\n\nBobby Kaura\, MScBobby has supported the creation of Illumina For Startups\, a platform and portal for entrepreneurial and ecosystem development initiatives\, with startups\, entrepreneurs\, investors and lifesciences stakeholders. He co-launched Illumina Accelerator Cambridge UK\, the flagship initiative under Illumina For Startups\, and the second location for Global Illumina Accelerator which is a genomics and VC backable company creation engine. In his current role\, he looks to grow the life sciences and genomics ecosystem\, supporting UK Plc.\, and globally\, by partnering with entrepreneurs\, investors and individuals within the innovation/entrepreneurial community\, to support entrepreneurs with access to funding\, sequencing\, coaching and facilities and to create new models of innovation. Previously\, he was responsible for heading commercial market and business development for Illumina EMEA. His focus was on how the application of genomics enables precision health. \n\n\n\nBefore joining Illumina\, he worked in the NHS to deliver sustainable transformation programs\, early founder team for US based startup and spent several years working in the pharma industry. \n\n\n\nHe is a member of the advisory board at Praesens Foundation (non-profit)\, Expert in Residence at Cambridge Judge Business School & Oxford University Translational Research Office and member of NHS Innovation Accelerator panel. In addition\, he advises health\, tech and blockchain startups. \n\n\n\nBobby read his B.Sc in Biology\, with a focus on neuroscience and genomics\, and an M.Sc in IT from the Queen Mary University of London. \n\n\n\n\n\n\n\nDr. Santiago Miriuka\, MD MSc PhDSantiago is the co-founder and CEO/CTO of MultiplAI Health. He is a Medical Doctor with 20+ years in clinical cardiology. Director of a basic and translational lab working on cutting-edge cellular and molecular biology. Data scientist and coder looking to innovate in medicine. \n\n\n\nregister to receive zoom link\n\n\n\nModerator: Michael Akhras\, Colibri Ventures \n\n\n\n\n\n\n\n \n\n\n\nClinical Talks\n\n\n\nClinical Talks is back for more! With a brand new and shiny Season 6. After successfully completing 5 seasons with > 70 enthusiastic Clinical Talkers to our record\, we have barely scratched the surface of all the amazing work our clinical\, academic and industry Life Science community has to offer. More about the upcoming events is available here. \n\n\n\nThese events are co-organized by Karolinska Institutet Innovations AB and SciLifeLab\, and brought to you by Colibri Ventures.
URL:https://www.scilifelab.se/event/clinical-talks-a-co-creation-engine-for-the-next-generation-life-science-ventures/
LOCATION:Online event via Zoom
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/08/Square-500x500-Clinical-Talks@4x.png
ORGANIZER;CN="Clinical Talks":MAILTO:precisionmedicine@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230209T120000
DTEND;TZID=Europe/Stockholm:20230209T130000
DTSTAMP:20260403T230232
CREATED:20230101T202819Z
LAST-MODIFIED:20230118T172346Z
UID:10000761-1675944000-1675947600@www.scilifelab.se
SUMMARY:Campus Solna Seminar Series: Patrick Bryant and Jan Schlegel
DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an  initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nThis week:\n\n\n\n\n\n\nPatrick Bryant\n\n\n\nArne Elofsson – alpha 6 \n\n\n\nStructure prediction of protein-nucleic acid complexes. \n\n\n\n\n\nJan Schlegel\n\n\n\nErdinc Sezgin – gamma 3 \n\n\n\nA Multiparametric and High-Throughput Platform for Host-Virus Binding Screens. \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page.
URL:https://www.scilifelab.se/event/campus-solna-seminar-series-feb-9/
LOCATION:Milkyway SciLifeLab Solna\, Tomtebodavägen 23\, Solna
CATEGORIES:Community
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/09/IMG_20221103_120135408_HDR-scaled.jpg
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230209T080000
DTEND;TZID=Europe/Stockholm:20230209T170000
DTSTAMP:20260403T230232
CREATED:20230203T143855Z
LAST-MODIFIED:20230203T144002Z
UID:10000804-1675929600-1675962000@www.scilifelab.se
SUMMARY:Data-driven hallmarks of acute myeloid leukemia: biological\, prognostic and therapeutic implications
DESCRIPTION:Tom Erkers \n\n\n\nAssistant professor\, Department of Oncology-Pathology\, Karolinska Institutet \n\n\n\nHosts: CBCS-KI and PhenoTarget Research Community Program \n\n\n\nFebruary 9 at 3.30 pm \n\n\n\nGamma 2 Lunch Room & on Zoom
URL:https://www.scilifelab.se/event/data-driven-hallmarks-of-acute-myeloid-leukemia-biological-prognostic-and-therapeutic-implications/
LOCATION:Gamma 2 Lunchroom\, SciLifeLab\, Tomtebodavägen 23\, Solna\, Sweden
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230208T090000
DTEND;TZID=Europe/Stockholm:20230210T170000
DTSTAMP:20260403T230232
CREATED:20221214T102444Z
LAST-MODIFIED:20221214T102750Z
UID:10000751-1675846800-1676048400@www.scilifelab.se
SUMMARY:Omics Integration and Systems Biology - Online
DESCRIPTION:The National Bioinformatics Infrastructure Sweden (NBIS) is pleased to announce the workshop in Omics Integration and Systems Biology. This workshop is open for PhD students\, postdocs\, group leaders and core facility staff from Swedish academic institutions looking for an introduction to multi-omics data analysis and integration of biological data. This course will include lectures and hands-on exercises from NBIS / Scilifelab experts from Stockholm\, Lund and Gothenburg. \n\n\n\n\n\n\n\n\n\nApplication\n\n\n\n\n\nCourse website\n\n\n\n\n\n\n\n\n\nImportant dates\n\n\n\n\nApplication opens: 15 December 2022\n\n\n\nApplication closes: 25 January 2023\n\n\n\nConfirmation to accepted applicants: 1 February 2023\n\n\n\n\n\n\n\n\nCourse fee\n\n\n\nThis online training event has no fee. However\, if you accept a position at the workshop and do not participate (no-show) you will be invoiced 2000 SEK. * Please note that NBIS cannot invoice individuals. \n\n\n\n\n\n\n\nCourse content\n\n\n\nThe aim of this course is to provide an integrated view of data-driven hypothesis generation through machine learning integration methods\, biological graph / network analysis and genome-scale metabolic models. A general description of different methods for analyzing different omics data (e.g. transcriptomics and genomics) will be presented with some of the lectures discussing key methods and pitfalls in their integration. The techniques will be discussed in terms of their rationale and applicability. The course will also include hands-on sessions and seminars by invited speakers.Some of the covered topics include: \n\n\n\n\nData pre-processing and cleaning prior to integration;\n\n\n\nApplication of machine learning for multi-omics analysis including deep learning;\n\n\n\nMulti-omics integration\, clustering and dimensionality reduction;\n\n\n\nBiological network inference\, community and topology analysis and visualization;\n\n\n\nCondition-specific and personalized modeling through Genome-scale Metabolic models for integration of transcriptomic\, proteomic\, metabolomic and fluxomig data;\n\n\n\nIdentification of key biological functions and pathways;\n\n\n\nIdentification of potential biomarkers and targetable genes through modeling and biological network analysis;\n\n\n\nApplication of network approaches in meta-analyses;\n\n\n\nSimilarity network fusion and matrix factorization techniques;\n\n\n\nIntegrated data visualization techniques\n\n\n\n\nFurther details about the course content may be found on the course website. \n\n\n\n\n\n\n\nEntry requirements\n\n\n\nThis course is open for PhD students\, postdocs\, group leaders and core facility staff from Swedish academic institutions. Please note that NBIS training events do not provide any formal university credits. If formal credits are crucial\, the student needs to confer with the home department before submitting a course application in order to establish whether the course is valid for formal credits or not. \n\n\n\nPractical exercises can be performed using R or Python\, so we only accept students with previous experience in one of those programming languages. We will not discuss how to process specific omics\, and the students are referred to other NBIS courses for this matter. \n\n\n\nRequired \n\n\n\n\nBasic knowledge in R or Python;\n\n\n\nBasic understanding of frequentist statistics;\n\n\n\nA computer with a web camera\, Zoom\, and permissions for installing software.\n\n\n\n\nDesired \n\n\n\n\nExperience with analysis of NGS and other omic data;\n\n\n\nCompleting NBIS courses “Introduction to Bioinformatics using NGS data” and “Introduction to biostatistics and machine learning”\n\n\n\nBasic conda and git knowledge\n\n\n\n\nThis workshop can accommodate a maximum of 25 participants. If we receive more applications\, participants will be selected based on several criteria including entry requirements\, motivation to attend the course as well as gender and geographical balance. \n\n\n\nContact information\n\n\n\nFor questions about this workshop please contact: edu.omics-integration@nbis.se
URL:https://www.scilifelab.se/event/omics-integration-and-systems-biology-online/
LOCATION:Online event via Zoom
CATEGORIES:Course
ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230207T120000
DTEND;TZID=Europe/Stockholm:20230207T130000
DTSTAMP:20260403T230232
CREATED:20221219T095359Z
LAST-MODIFIED:20230112T160221Z
UID:10000753-1675771200-1675774800@www.scilifelab.se
SUMMARY:SciLifeLab Metabolomics platform - Metabolomics for the masses
DESCRIPTION:Otto SavolainenMetabolites reflect the interaction between the gene cascade and surrounding exposures and are therefore essential components in all living organisms. Metabolites can be used to identify biomarkers of both health conditions and environmental exposures. The SciLifeLab Metabolomics platform offers a range of services for researchers interested in metabolomics. \n\n\n\nRegistration\n\n\n\nSciLifeLab Gothenburg Lunch Seminar Series (hybrid) 2022-2023\n\n\n\nSciLifeLab (www.scilifelab.se) is a national infrastructure within life science with a wide range of advanced technology and expertise. The newly started SciLifeLab site in Gothenburg includes units at both the University of Gothenburg and Chalmers University of Technology and has a strong connection to Sahlgrenska University Hospital. This seminar series is started with an overview of the site\, followed by presentations by the individual units. \n\n\n\nOn-site location: Assembly Room “Birgit Thilander”\, Medicinaregatan 3A light lunch will be offered during the talks.It is also possible to participate online via Zoom. The link will be sent out after registration.
URL:https://www.scilifelab.se/event/scilifelab-metabolomics-platform-metabolomics-for-the-masses-2/
LOCATION:Birgit Thilander Lecture Hall\, Medicinaregatan 3\, Göteborg
CATEGORIES:Event
ORGANIZER;CN="SciLifeLab Gothenburg":MAILTO:gothenburg@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230207T083000
DTEND;TZID=Europe/Stockholm:20230207T160000
DTSTAMP:20260403T230232
CREATED:20230112T095508Z
LAST-MODIFIED:20230112T095510Z
UID:10000788-1675758600-1675785600@www.scilifelab.se
SUMMARY:KTH's Kommunikatörer på SciLifeLab
DESCRIPTION:Välkommen på Kommunikatörsträff på SciLifeLab i Solna! \n\n\n\nPlats: SciLifeLab\, Tomtebodavägen 23\, SolnaDatum: tisdag 7 februari 2023Tid: 08:30-16:00 \n\n\n\nHar ni fått nya kommunikatörskollegor så vidarebefordra gärna inbjudan!Program \n\n\n\n08:30 Frukostfika09:00 Programpunkter kopplade till arbetet med stödområde kommunikation\, grupparbeten och diskussion12:00 Lunch13:00 Uppföljning förmiddagens arbete\, vad händer nu?13:30 Vad är SciLifeLab? Kommunikationsarbetet på SciLifeLab; utmaningar och prioriteringar14:15 Fikapaus14:30 Rundvandring med visning av lokaler och det arbete som pågår15:30 Universitetsdirektör Kerstin Jacobsson kommer och pratar om vårt samordnade verksamhetsstöd16:00 Slut för dagen \n\n\n\nVi återkommer med ett mer detaljerat program längre fram!
URL:https://www.scilifelab.se/event/kths-kommunikatorer-pa-scilifelab/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Community
ORGANIZER;CN="SciLifeLab Event":MAILTO:events@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230206T090000
DTEND;TZID=Europe/Stockholm:20230210T170000
DTSTAMP:20260403T230232
CREATED:20221124T091335Z
LAST-MODIFIED:20221214T103757Z
UID:10000738-1675674000-1676048400@www.scilifelab.se
SUMMARY:Introduction to bioinformatics using NGS data - Lund\, Umeå and Uppsala
DESCRIPTION:This intense one-week workshop provides an introduction to the analysis of next generation sequencing data. The workshop is open to PhD students\, post-docs\, and other researchers affiliated to Swedish academia and healthcare. It is organised by the National Bioinformatics Infrastructure Sweden (NBIS) and National Genomics Infrastructure (NGI). \n\n\n\n\n\n\n\nImportant dates\n\n\n\nApplication opens: 21-Nov-2022Application closes: 31-Dec-2022Information to accepted students will be sent:  Week 2\, 2023 \n\n\n\n\n\n\n\nVenues\n\n\n\nThis workshop runs in parallel on-site in Uppsala\, Umeå and Lund. Lectures will be streamed online from our Uppsala site (mainly) to the other classrooms. Several teaching assistants will be present in the Umeå\, Lund and Uppsala classrooms all week to help with exercises and questions. When registering you will be asked to select a preferred site. \n\n\n\nUppsalaTrippelrummet (E10:1307-1309)Entrance C11Biomedical Centre (BMC) / SciLifeLab / Uppsala UniversityHusargatan 3752 37 Uppsala \n\n\n\nUmeåUB341Universitetsbibioteket plan 3Umeå University901 87 Umeå \n\n\n\nLundSölvegatan 35Lund University223 62 Lund \n\n\n\n\n\n\n\nFor more detailed information about workshop syllabus\, learning outcomes and entry requirements\, please visit the workshop website. \n\n\n\nwebsite & Application\n\n\n\n\n\n\n\nContact\n\n\n\nEmail: edu.intro-ngsMalin Larsson\, Martin Dahlö\, Roy Francis \n\n\n\n\n\n\n\nCourse fee\n\n\n\nThis on-site training event costs 2000 SEK invoiced to the participant’s organisation. If you accept a position and do not participate (no-show) you will still be invoiced 2000 SEK. Please note that NBIS cannot invoice individuals. \n\n\n\n\n\n\n\nCourse content\n\n\n\nBriefly\, the workshop covers the followings major topics: \n\n\n\n\nWorking on the UNIX/LINUX command line\n\n\n\nBioinformatic/NGS data formats and QC\n\n\n\nDNA variant calling workflow essentials\n\n\n\nRNA sequence analysis workflow essentials\n\n\n\n\nLectures on the theory of concepts will be paired with practical computational exercises in the Linux environment. The practical exercises will focus on data from the Illumina platform\, but we will discuss other sequencing platforms and the advantages and challenges to using their data during the lectures. \n\n\n\nPlease note that NBIS training events do not provide any formal university credits. Attendees with full attendance and completion of tasks will be issued a certificate of participation indicating topics covered and duration of the workshop. 
URL:https://www.scilifelab.se/event/introduction-to-bioinformatics-using-ngs-data-2/
CATEGORIES:Course
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230202T120000
DTEND;TZID=Europe/Stockholm:20230202T130000
DTSTAMP:20260403T230232
CREATED:20230101T202148Z
LAST-MODIFIED:20230118T172250Z
UID:10000760-1675339200-1675342800@www.scilifelab.se
SUMMARY:Campus Solna Seminar Series: Krzysztof Jurdzinski and Keyi Geng
DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an  initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nThis week:\n\n\n\n\n\n\nKrzysztof Jurdzinski\n\n\n\nAnders Andersson – alpha 3 \n\n\n\nMetabarcoding-based biodiversity monitoring along the Swedish coastline. \n\n\n\n\n\nKeyi Geng\n\n\n\nClaudia Kutter – gamma 5 \n\n\n\nCas9-mediated genome engineering exaggerates collateral deletion at the PTEN gene locus mimicking cancer profiles. \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page.
URL:https://www.scilifelab.se/event/campus-solna-seminar-series-feb-2/
LOCATION:Milkyway SciLifeLab Solna\, Tomtebodavägen 23\, Solna
CATEGORIES:Community
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/09/IMG_20221103_123412496_HDR2-scaled.jpg
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230130T080000
DTEND;TZID=Europe/Stockholm:20230203T140000
DTSTAMP:20260403T230232
CREATED:20221130T151251Z
LAST-MODIFIED:20230124T084743Z
UID:10000740-1675065600-1675432800@www.scilifelab.se
SUMMARY:Single cell RNAseq data analysis
DESCRIPTION:This workshop will introduce the best practice bioinformatics methods for processing and analyses of single cell RNA-seq data. The total course duration is 5 days\, including the lectures and practical exercises that will be held on site in Stockholm. \n\n\n\nApplication\n\n\n\nApplication open: 2022-11-25 \n\n\n\nApplication deadline: 2022-12-21 \n\n\n\napplication form\n\n\n\nCourse Leaders\n\n\n\nPaulo Czarnewski \n\n\n\nÅsa Björklund \n\n\n\nContact: edu.sc@nbis.se \n\n\n\nCourse fee\n\n\n\nThis workshop has a fee of 2000kr and will be invoiced to the selected participants (Please note that NBIS cannot invoice individuals). Applications without complete invoice information will not be considered. Course fees cover all coffee breaks\, all lunches and 1 course dinner. \n\n\n\nCourse content\n\n\n\n\nOverview of the current scRNAseq technologies\n\n\n\nBasic overview of pipelines for processing raw reads into expression values\n\n\n\nQuality control and normalization\n\n\n\nDimensionality reduction techniques\n\n\n\nData integration and batch correction\n\n\n\nDifferential gene expression\n\n\n\nClustering techniques\n\n\n\nCelltype prediction\n\n\n\nTrajectory inference analysis\n\n\n\nAnalysis of spatial transcriptomics datasets\n\n\n\nComparison of different analysis pipelines such as Seurat\, Scran and Scanpy\n\n\n\n\nWho can apply?\n\n\n\nThis is a national course. The course is open for PhD students\, postdocs\, group leaders and core facility staff within all Swedish universities. Even if we do accept application from other countries\, we give priority to applicants from Swedish universities prior to applicants from industry and academics from other countries. \n\n\n\nPractical exercises will be performed using either R or Python\, so we only accept students that fulfil the entry requirements below. \n\n\n\nEntry requirements\n\n\n\n\nYou are used to program in either R and/or Python\n\n\n\nYou already understand the basis of NGS technologies\n\n\n\nYou are able to analyse bulk RNA-sequencing data\n\n\n\nYou are used to navigate and use UNIX command line (bash)\n\n\n\nHave full access to your computer (admin permissions). Instructions on installation will be sent by email to accepted participants.\n\n\n\n\nDue to limited space the course can accommodate maximum of 25 participants. If we receive more applications\, participants will be selected based on several criteria. Selection criteria include correct entry requirements\, motivation to attend the course as well as gender and geographical balance.
URL:https://www.scilifelab.se/event/single-cell-rnaseq-data-analysis/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Course
ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230127T110000
DTEND;TZID=Europe/Stockholm:20230127T140000
DTSTAMP:20260403T230232
CREATED:20221221T104004Z
LAST-MODIFIED:20221221T141639Z
UID:10000755-1674817200-1674828000@www.scilifelab.se
SUMMARY:WASP and DDLS networking event January 2023
DESCRIPTION:The second WASP-DDLS joint call for research project: Information and networking event  \nThis networking event welcomes everyone that wants to learn more about the second WASP-DDLS joint call for research projects. The event will start with an open Zoom meeting that will give an introduction to the new call and also highlight lessons learned from previous approved projects. The digital introduction will be followed by on-site network meetings at different university sites. \n11:00-12:00 Open Zoom meeting: Introduction and information about new call\, lessons from ongoing projects\, Q&A \n\nDanica Kragic\, Co-director Co-director for external relations WASP\nOlli Kallioniemi\, Director SciLifeLab\nErik Kristiansson member of ScilLifeLab and DDLS steering group\n\n12:00-14:00 Mingle and networking at university sites (light lunch will be provided). \n\nKTH\, host Joakim Jaldén\nChalmers\, host Rebecka Jörnsten and Erik Kristiansson\nLiU\, host Andreas Kerren\nUmU\, host Martin Rosvall\nLund\, host Bo Bernhardsson\n\nDeadline for registration January 18th \n \n\n\nRegister\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nRead more
URL:https://www.scilifelab.se/event/wasp-and-ddls-networking-event-january-2023/
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230126T120000
DTEND;TZID=Europe/Stockholm:20230126T130000
DTSTAMP:20260403T230232
CREATED:20230101T200730Z
LAST-MODIFIED:20230117T073945Z
UID:10000759-1674734400-1674738000@www.scilifelab.se
SUMMARY:Campus Solna Seminar Series: Hong Yang and Kyra Kuhnigk
DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an  initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nThis week:\n\n\n\n\n\n\nHong Yang\n\n\n\nAdil Mardinoglu – alpha 6 \n\n\n\nNovel insights into ChREBP regulation in Glycogen Storage Disease Type 1a Liver Disease. \n\n\n\n\n\nKyra Kuhnigk\n\n\n\nBjörn Önfelt – gamma 3 \n\n\n\nModulation of lytic molecules restrain serial killing in γδ T cells. \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page.
URL:https://www.scilifelab.se/event/campus-solna-seminar-series-jan-26/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Community
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/09/IMG_20221103_124630107_HDR-scaled.jpg
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230126T110000
DTEND;TZID=Europe/Stockholm:20230126T130000
DTSTAMP:20260403T230232
CREATED:20230112T164116Z
LAST-MODIFIED:20230126T092043Z
UID:10000786-1674730800-1674738000@www.scilifelab.se
SUMMARY:FAIRPoints-FAIRPoints ‘Ask me Anything’ (AMA)
DESCRIPTION:Location: Online via Zoom \n\n\n\n\n\nSee event in your timezone\n\n\n\nFAIRPoints ‘Ask Me Anything’ on Identifiers\n\n\n\nThis event is part of a series of “Ask Me Anything”-style events featuring keynote speakers from the RDA\, and EOSC groups focused on RDA activities and EOSC solutions in relation to FAIR implementation and Open practices in Science. \n\n\n\nJanuary\n\n\n\nThe theme of this session is “FAIRPoints ‘Ask Me Anything’ on Identifiers.” We will be discussing the different types of identifiers available\, their importance in creating FAIR Digital Objects\, and how they can be applied and integrated into research practices. Speakers include Maggie Hellström\, Peter Wittenberg\,  Matthew Buys\, and moderated by Natasha Simons\, Nabil Ksibi\, Patricia Herterich.  \n\n\n\nThe events will bring together speakers from the RDA Groups and speakers from a related EOSC service to describe how their work aligns\, how it connects to the research community\, and how it benefits the research community in a way that is directly related to the implementation of FAIR and Open research practices. The events are beginner-friendly\, laid-back\, and easy to follow\, with moderators driving the discussion\, posing questions to our speakers\, and inviting audience questions. Finally a selection of questions will be gathered and turned into Google Educational Q&A flashcards (https://schema.org/QAPage) for future reference. \n\n\n\nFAIRPoints ‘Ask me Anything’ (AMA) event series on FAIR implementation and Open practices in Science\, is hosted by FAIRPoints and supported by RDA\, EOSC\, FDO\, GOFAIR-US & SciLifeLab-DataCentre.  \n\n\n\nFor more information please visit https://eoscfuture-grants.eu/meet-the-grantees/rda-eosc-future-ambassador-ask-me-anything-style-events-fair-implementation-and.  \n\n\n\nThemeTypeDateSpeakerModeratorIdentifiersEventJanuary 26th 2023Maggie HellströmNabil KsibiMatthew BuysNatasha SimonsPeter WittenbergPatricia HerterichMachine Centric Science PodcastJanuary 2023Christophe Blanchi listen hereDonny WinstonFAIR Data PodcastPodcastJanuary 18th 2023Tibor Kalman and Sven Bingert listen hereRory MacneilFAIR software and WorkflowsEventFebruary 23rd 2023TBATBARegulatory Processes and GovernanceEventApril 27th 2023TBATBAMachine ActionabilityEventMay 25th 2023TBATBAEquitable and Transparent Access to Information and KnowledgeEventSeptember 28th 2023\n\n\n\n\n\n\n\nRegister here\n\n\n\nSign up for future events here \n\n\n\nTwitter: @FAIR_Points
URL:https://www.scilifelab.se/event/fairpoints-fairpoints-ask-me-anything-ama/
LOCATION:Online event via Zoom
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230124T140000
DTEND;TZID=Europe/Stockholm:20230124T150000
DTSTAMP:20260403T230232
CREATED:20230111T083105Z
LAST-MODIFIED:20230113T083450Z
UID:10000785-1674568800-1674572400@www.scilifelab.se
SUMMARY:3D context analysis of multicellular systems by CUBIC cell-omics technology
DESCRIPTION:Speaker: Professor Etsuo Susaki  \n\n\n\nDepartment at Biochemistry and Systems Biomedicine\, Juntendo University Graduate School of MedicineVisiting Scientist at Laboratory for Synthetic Biology\, RIKEN Center for Biosystems Dynamics Research \n\n\n\n\n\n\n\nThree-dimensional biological tissue and multicellular systems should primarily be analysed by 3D information technology. Tissue clearing and lightsheet microscopy allow 3D analysis and can be combined with multiomics analysis for full biological context investigations.     
URL:https://www.scilifelab.se/event/3d-context-analysis-of-multicellular-systems-by-cubic-cell-omics-technology/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2023/01/Bild-Etsuo-talk.png
ORGANIZER;CN="Advanced Light Microscopy Unit":MAILTO:stewen@kth.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230124T120000
DTEND;TZID=Europe/Stockholm:20230124T130000
DTSTAMP:20260403T230232
CREATED:20221219T093019Z
LAST-MODIFIED:20230124T102056Z
UID:10000752-1674561600-1674565200@www.scilifelab.se
SUMMARY:OligoNova Hub - National resource for development of oligonucleotide therapies
DESCRIPTION:Pär MatssonWe will present OligoNova Hub and the capabilities we provide for academic researchers to transform their scientific discoveries into new oligonucleotide therapies. \n\n\n\nregistration\n\n\n\nSciLifeLab (www.scilifelab.se) is a national infrastructure within life science with a wide range of advanced technology and expertise. The newly started SciLifeLab site in Gothenburg includes units at both the University of Gothenburg and Chalmers University of Technology and has a strong connection to Sahlgrenska University Hospital. This seminar series is started with an overview of the site\, followed by presentations by the individual units. \n\n\n\nOn-site location: Assembly Room “Birgit Thilander”\, Medicinaregatan 3A light lunch will be offered during the talks.It is also possible to participate online via Zoom. The link will be sent out after registration.
URL:https://www.scilifelab.se/event/oligonova-hub-national-resource-for-development-of-oligonucleotide-therapies-2/
LOCATION:Birgit Thilander Lecture Hall\, Medicinaregatan 3\, Göteborg
CATEGORIES:Event
ORGANIZER;CN="SciLifeLab Gothenburg":MAILTO:gothenburg@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230124T100000
DTEND;TZID=Europe/Stockholm:20230124T104500
DTSTAMP:20260403T230232
CREATED:20230110T160227Z
LAST-MODIFIED:20230124T132100Z
UID:10000783-1674554400-1674557100@www.scilifelab.se
SUMMARY:Project support in chemical biology and drug discovery
DESCRIPTION:The chemical biology unit (CBCS) and the Drug discovery and development (DDD) platform at SciLifeLab have calls out for projects. \n\n\n\nCBCS is looking for projects in Chemical Biology which includes assay development for small molecule screening and profiling\, as well as enabling chemistry. For more information\, please visit www.cbcs.se. \n\n\n\nThe DDD platform has a call looking for new project proposals for drug discovery. All therapeutic modalities that can be developed in collaboration with the DDD platform at SciLifeLab are of interest\, including small molecules\, antibodies\, oligonucleotides and new modalities. \n\n\n\nSome users and projects are at the intersection between chemical biology and drug discovery.This webinar aims to guide users to the call that best suits the needs of their project. \n\n\n\nDocumentation\n\n\n\nDDD Call for Projects\n\n\n\nWebinar Slides CBCS\n\n\n\nWebinar Slides PPP
URL:https://www.scilifelab.se/event/project-support-in-chemical-biology-and-drug-discovery/
LOCATION:Online event via Zoom
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/04/Pawel_DDD_WP.jpg
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END:VCALENDAR