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BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230404T080000
DTEND;TZID=Europe/Stockholm:20230509T170000
DTSTAMP:20260403T211531
CREATED:20230307T080222Z
LAST-MODIFIED:20230307T091417Z
UID:10000828-1680595200-1683651600@www.scilifelab.se
SUMMARY:Digital image analysis for scientific applications
DESCRIPTION:Language of instruction: EnglishCourse period: 2023-04-11– 2023-05-09Course structure: The course will be hybrid on site and via zoom to facilitate remote participation. For computer exercises we encourage on-site participation for best possible support\, but will do our best to also support those participating remotely. \n\n\n\nRECOMMENDED PREREQUISITES\n\n\n\nThe target group is PhD students from all subjects where digital image analysis (IA)  is used as a research tool. No previous experience in IA is required from the course participants\, but an interest in its potential as a tool in their own research is important. The course can be followed with a basic knowledge of mathematics (corresponding to upper‐ secondary level entry requirements) and basic computer skills. \n\n\n\nLEARNING OUTCOMES\n\n\n\n\nexplain fundamental notions of IA\, such as digitization\, image enhancement\, segmentation\, and feature extraction and classification;\n\n\n\ncritically evaluate several different methods for image segmentation\, compression\, distance computation\, frequency analysis\, etc.\n\n\n\nuse software to apply and evaluate algorithms for solving image analysis problems;\n\n\n\nanalyze and plan the steps necessary to solve a realistic image analysis problem;\n\n\n\ngive examples of applications in research and industry where image analysis is used.\n\n\n\n\nLEARNING OUTCOMES FOR DOCTORAL DEGREE \n\n\n\nThe course participants will practice their ability to perform scientific analyses\, find and test appropriate IA methods\, and present and discuss their scientific results. \n\n\n\nCOURSE CONTENTS\n\n\n\nThe focus of the course is on reaching a broad understanding of IA and a basic understanding of the theory and algorithms behind the IA methods. The course starts with basic IA methods and computer exercises\, including IA research methodology and IA research ethics. Modern techniques based on Artificial Intelligence will also be discussed in relation to the classical approaches.  \n\n\n\nINSTRUCTION\n\n\n\nThe pedagogical approach will combine traditional lectures\, examples of real life applications and hands-on exercises. We also use a flipped classroom approach based on our pre-recorded course material which enables participants to prepare for discussions and exercises. \n\n\n\nASSESSMENT\n\n\n\nThe examination will be divided into two parts: \n\n\n\n\ncompleted four computer exercises\, which enable the course participants to both get familiar with the interfaces of common software and to solve realistic image processing problems\,\n\n\n\na written exam\n\n\n\n\nCompleted exercises and passing written exam gives 5hp.  \n\n\n\nCOURSE EXAMINER\n\n\n\nCarolina Wählby\, carolina.wahlby@it.uu.se together with other seniors involved in the BioImage Informatics Unit of SciLifeLab (https://www.scilifelab.se/units/bioimage-informatics/)\, the Image analysis node of the National Microscopy Infrastructure (http://www.nmisweden.se/)\, and the Centre for Image Analysis (https://www.cb.uu.se/) hosted at the Dept. of Information Technology. \n\n\n\nDEPARTMENT WITH MAIN RESPONSIBILITY\n\n\n\nDept. of Information Technology \n\n\n\nCONTACT PERSON/S \n\n\n\nCarolina Wählby\, carolina.wahlby@it.uu.se \n\n\n\nAPPLICATION\n\n\n\nSubmit the application for admission to: carolina.wahlby@it.uu.seSubmit the application not later than: March 25\, 2023
URL:https://www.scilifelab.se/event/digital-image-analysis-for-scientific-applications/
LOCATION:Uppsala University\, Uppsala\, Sweden
CATEGORIES:Course
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2023/03/Course.jpg
ORGANIZER;CN="Bioimage Informatics Unit":MAILTO:biif@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230406T120000
DTEND;TZID=Europe/Stockholm:20230406T130000
DTSTAMP:20260403T211531
CREATED:20230101T210900Z
LAST-MODIFIED:20230403T074015Z
UID:10000769-1680782400-1680786000@www.scilifelab.se
SUMMARY:Campus Solna Seminar Series: Kaja Harton and Inci Aksoylu
DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an  initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nThis week:\n\n\n\n\n\n\nKaja Harton\n\n\n\nMagda Bienko – alpha 4 \n\n\n\nMapping DNA in mitotic chromosomes \n\n\n\n\n\nInci Aksoylu\n\n\n\nOla Larsson – gamma 5 \n\n\n\nTranslatome analysis of Tuberous Sclerosis Complex 1 patient-derived isogenic neural progenitor cells reveal rapamycin-dependent and independent alterations \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page.
URL:https://www.scilifelab.se/event/campus-solna-seminar-series-apr-6/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Community
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/09/IMG_20221103_123412496_HDR2-scaled.jpg
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230413T120000
DTEND;TZID=Europe/Stockholm:20230413T130000
DTSTAMP:20260403T211531
CREATED:20230101T211845Z
LAST-MODIFIED:20230406T101648Z
UID:10000770-1681387200-1681390800@www.scilifelab.se
SUMMARY:Campus Solna Seminar Series: Sara Mravinacova and Humam Siga
DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an  initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nThis week:\n\n\n\n\n\n\nSara Mravinacova\n\n\n\nPeter Nilsson – alpha 2 \n\n\n\nCSF synaptic protein pairs efficiently separate Alzheimer’s disease affected from unaffected individuals through adjustments for individual differences \n\n\n\n\n\nHumam Siga\n\n\n\nAfshin Ahmadian – alpha 3 \n\n\n\nAnalysis of colorectal cancer\, whole genome linked-reads data acquired by droplet barcode sequencing (DBS) technology \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page.
URL:https://www.scilifelab.se/event/campus-solna-seminar-series-apr-13/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Community
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/09/IMG_20221103_120135408_HDR-scaled.jpg
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230417T090000
DTEND;TZID=Europe/Stockholm:20230417T170000
DTSTAMP:20260403T211531
CREATED:20230209T071629Z
LAST-MODIFIED:20230329T110957Z
UID:10000807-1681722000-1681750800@www.scilifelab.se
SUMMARY:SciLifeLab Day Gothenburg
DESCRIPTION:This event is a kick-off for the national SciLIfeLab site in Gothenburg. Learn more about the services and capabilities that are offered from SciLifeLab\, both nationally and locally\, and how you can participate in the activities! \n\n\n\nThe Gothenburg Site of SciLifeLab is happy to welcome the research community in Gothenburg and beyond to this kick-off. Meet with the established site\, researchers\, local and national infrastructures; interact with the SciLifeLab capabilities\, Precision Medicine\, Pandemic Laboratory Preparedness and Planetary Biology; learn about the Data Centre services and the Data Driven Life Science program and much more. \n\n\n\nRead more\n\n\n\nsign up here\n\n\n\nContact\n\n\n\n\n\ngothenburg@scilifelab.se \n\n\n\n\n\nMaria SmedhSciLifeLab GothenburgSite Coordinatormaria.smedh@gu.se 0766-229712\n\n\n\n\n\nSciLifeLab Days on the other sites\n\n\n\n\nGothenburg\, April 17\n\n\n\nUmeå\, September 11\n\n\n\nLund\, September 28\n\n\n\nLinköping\, October 10
URL:https://www.scilifelab.se/event/scilifelab-day-gothenburg/
LOCATION:Conference Centre Wallenberg\, Medicinaregatan 20A\, Gothenburg\, 413 90\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2023/02/Gothenburg-SciLifeLab-Days-Registration-Open.png
ORGANIZER;CN="SciLifeLab Gothenburg":MAILTO:gothenburg@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230417T090000
DTEND;TZID=Europe/Stockholm:20230419T170000
DTSTAMP:20260403T211531
CREATED:20230223T124619Z
LAST-MODIFIED:20230223T125220Z
UID:10000819-1681722000-1681923600@www.scilifelab.se
SUMMARY:Workshop on Data Visualization in R - Lund
DESCRIPTION:A national course open for PhD students (prioritized)\, postdocs\, researchers and other employees within Swedish universities who are interested in learning to produce publication quality plots using different packages in R. \n\n\n\n \n\n\n\nResponsible teachers: Lokeshwaran Manoharan\, Markus Ringner\, Juliana Assis   \n\n\n\nContact information: edu.plotting.r@nbis.se \n\n\n\n\n\n\n\n\n\nApplication\n\n\n\n\n\nCourse website\n\n\n\n\n\n\n\n\n\nImportant dates\n\n\n\nApplication open: February 23\, 2023 \n\n\n\nApplication deadline: March 31\, 2023 \n\n\n\nConfirmation to accepted participants: April 3\, 2023 \n\n\n\n\n\n\n\nCourse fee\n\n\n\nThe fee for this on-site workshop is 2000 SEK to be paid by invoice to NBIS. Please note that NBIS cannot invoice individuals so we need your institutional invoicing address. The fee covers lunches\, coffee and a course dinner. Those who accept the spot and then do not attend without prior notification will also be invoiced. \n\n\n\nNote that travel and accommodation is not included in the fee and must be arranged by the participants. \n\n\n\n\n\n\n\nCourse description\n\n\n\nThis course aims to help researchers to visualize their data in different ways using R. This course will teach how to produce publication grade figures using R. A part of this course is also about making interactive plots that the researchers can view and share in a web-server to make interactive visualizations of their data. \n\n\n\n\n\n\n\nCourse content\n\n\n\nIn this course you will learn how to visualize your data in R. \n\n\n\nIn particular\, you will learn how to: \n\n\n\n\nformat the data necessary for ggplot\n\n\n\nmake bar-charts\, box-plots and others using ggplot\n\n\n\nmake PCA plots in ggplot\n\n\n\nuse R packages for heatmaps\n\n\n\nplot data on maps using R (optional)\n\n\n\nplot and handle phylogenetic trees in R (optional)\n\n\n\nmake interactive plots in R using Rshiny\n\n\n\nhost a Rshiny app in one of the available servers\n\n\n\n\n\n\n\n\n\n\n\n\nLearning outcomes\n\n\n\nBy the end of the course the participant will be able to: \n\n\n\n\nhandle data in R for visualizations\n\n\n\napply the grammar efficiently in ggplot to obtain the desired plot\n\n\n\ncombine different data and/or different plots that are of publication-grade\n\n\n\nwrite your own simple Rshiny app\n\n\n\ndeploy Rshiny apps in public servers. \n\n\n\n\n\n\n\n\nEntry requirements\n\n\n\nRequired for being able to follow the course and to complete the plotting exercises: \n\n\n\n\nfamiliarity with using R and Rstudio\n\n\n\na computer with R and Rstudio installed\n\n\n\ninstallation of necessary R packages prior to the start of the course\n\n\n\n\n\n\n\n\nSelection criteria\n\n\n\nThe course can accommodate 25 participants. Selection criteria include correct entry requirements\, motivation to attend the course as well as gender and geographical balance. Academic affiliated registrants are prioritized prior to participants from the industry. \n\n\n\nPlease note that NBIS training events do not provide any formal university credits. The training content is estimated to correspond to a certain number of credits\, however the estimated credits are just guidelines. If formal credits are crucial\, the student needs to confer with the home department before submitting a course application in order to establish whether the course is valid for formal credits or not.
URL:https://www.scilifelab.se/event/workshop-on-data-visualization-in-r-lund-3/
LOCATION:Retina D227\, Biologihuset\, Sölvegatan 35\, Lund\, 223 62
CATEGORIES:Course
ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230418T080000
DTEND;TZID=Europe/Stockholm:20230418T170000
DTSTAMP:20260403T211531
CREATED:20230303T100322Z
LAST-MODIFIED:20230303T100436Z
UID:10000827-1681804800-1681837200@www.scilifelab.se
SUMMARY:KI SciLifeLab Symposium
DESCRIPTION:We welcome all KI researchers based at or affiliated with SciLifeLab to the second annual symposium which includes workshops\, discussions and great opportunities to mingle! \n\n\n\nDate: 18 april\, 2023 \n\n\n\nTime: 09:00 – 17:00 \n\n\n\nPlace: Nobel Forum\, KI Campus Solna\,Nobels väg 1\, S-171 65 Solna Hitta på Google Maps \n\n\n\nRegistration deadline: 6 April\, 2023 \n\n\n\nContact: Science Officer\, Adina Feldman (adina.feldman@ki.se) \n\n\n\n \n\n\n\nregistration
URL:https://www.scilifelab.se/event/ki-scilifelab-symposium/
LOCATION:Nobel Forum\, Nobels väg 1\, Solna\, Sweden
CATEGORIES:Community
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230418T090000
DTEND;TZID=Europe/Stockholm:20230418T120000
DTSTAMP:20260403T211531
CREATED:20230412T073931Z
LAST-MODIFIED:20230412T074007Z
UID:10000853-1681808400-1681819200@www.scilifelab.se
SUMMARY:EIRENE Sweden Symposium on the Exposome
DESCRIPTION:This half-day symposium at SciLifeLab is hosted by Stockholm University and the National Facility for Exposomics at SciLifeLab\, with the goal to increase scientific dialogue on the exposome\, and to share perspectives on development of European infrastructure to support large scale exposomics. \n\n\n\nPresentations will feature prominent figures in the exposomics field\, including keynote lectures from leadership and international collaborators of EIRENE (Environmental Exposure Assessment Research Infrastructure)\, which is the first EU infrastructure (ESFRI Roadmap 2021) dedicated to human exposome research. \n\n\n\nZoom Link for Remote Participants: https://stockholmuniversity.zoom.us/j/63852683962 \n\n\n\nTime Speaker\, Affiliation Title  Session 1\, Chaired by Jonathan Martin\, Stockholm University 9:00-9:10 Åke Bergman\, Örebro University Introductory Remarks\, EIRENE Sweden 9:10-9:40 Jana Klánová\, Masaryk University EIRENE: What is needed to fill a gap in the ESFRI landscape? 9:40-10:00 Roxana Merino Martinez\, Karolinska InstitutetHEAP: Human Exposome Assessment Platform 10:00-10:30 Robert Barouki\, Université de Paris Exposome and Toxicology 10:30-10:50 Coffee Break\, Sponsored by ThermoFisher Scientific  Session 2: Chaired by Craig Wheelock\, Karolinska Institutet10:50-11:10 Tuulia Hyötyläinen\, Örebro University Sex-specific effects of environmental exposure as contributor to initiation and progression to non-alcoholic fatty liver disease 11:10-11:40 Roel Vermeulen\, Utrecht University Observations from The EXPANSE and EXPSOME-NL project 11:40-12:00 Jonathan Martin\, Stockholm University Chemical exposomics in people and the environment End of Programme (lunch for those interested)
URL:https://www.scilifelab.se/event/eirene-sweden-symposium-on-the-exposome/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Event
ORGANIZER;CN="National Facility for Exposomics":MAILTO:jon.martin@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230418T090000
DTEND;TZID=Europe/Stockholm:20230420T170000
DTSTAMP:20260403T211531
CREATED:20230119T131036Z
LAST-MODIFIED:20230314T102233Z
UID:10000791-1681808400-1682010000@www.scilifelab.se
SUMMARY:Introduction to Data Management Practices
DESCRIPTION:National course open for PhD students\, postdocs\, researchers and other employees within all Swedish universities. This course will introduce important aspects of Research Data Management through a series of lectures and hands-on computer exercises. The course is intended for researchers that want to take the first steps towards a more systematic and reproducible approach to analysing and managing research data. \n\n\n\n\n\n\n\nImportant dates\n\n\n\nApplication opens:  open now \n\n\n\nApplication closes:  2023-03-28 \n\n\n\nConfirmation to accepted students:  2023-03-17 and 2023-03-31 \n\n\n\nContact: edu.intro-dm@nbis.se \n\n\n\n\n\n\n\n\n\nCourse website\n\n\n\n\n\nApplication\n\n\n\n\n\n\n\nCourse fee\n\n\n\n1500 SEK paid by invoice to NBIS. This includes lunches\, coffee and snacks. Please note that NBIS cannot invoice individuals. \n\n\n\nDue to limited space the course can accommodate a maximum of 25 participants. If we receive more applications\, participants will be selected based on several criteria. Selection criteria include correct entry requirements\, motivation to attend the course as well as gender and geographical balance. \n\n\n\n\n\n\n\nCourse content\n\n\n\nTopics covered will include: \n\n\n\n\nOpen Science and FAIR in practice\n\n\n\nOrganising data\, files and folders in research projects\n\n\n\nDescribing data with metadata\n\n\n\nPublishing data to public data repositories\n\n\n\nCleaning tabular data and metadata with OpenRefine\n\n\n\nWriting basic recipes for data analysis and visualisation with R\n\n\n\nVersioning data\, documents and scripts\n\n\n\n\n\n\n\n\nEntry requirements\n\n\n\nNo previous programming experience is required but you are required to bring your own laptop with the required software pre-installed. Installation instructions will be provided before the course starts.
URL:https://www.scilifelab.se/event/introduction-to-data-management-practices-4/
LOCATION:Navet\, SciLifeLab Uppsala\, SciLifeLab Uppsala\, BMC C11\, Husargatan 3\, Uppsala\, 75237\, Sweden
CATEGORIES:Course
ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230418T120000
DTEND;TZID=Europe/Stockholm:20230418T130000
DTSTAMP:20260403T211531
CREATED:20230411T093123Z
LAST-MODIFIED:20230411T093124Z
UID:10000852-1681819200-1681822800@www.scilifelab.se
SUMMARY:BICU and Biomolecule Characterization Unit
DESCRIPTION:In the frame of the “SciLifeLab Site Umeå / KBC Infrastructure Seminar Series”\, the seminars will be organised every second Tuesday during spring 2023. The seminars will be held in a hybrid format IRL in Glasburen\, KBC\, and online via Zoom. Learn more about the seminar series and Schedule for Spring 2023 here. \n\n\n\nOn April 18th\, 12:00-13:00\, SciLifeLab Site Umeå / KBC Infrastructure Seminar Series presents: \n\n\n\nBiochemical Imaging Centre Umeå and Biomolecule Characterization Unit. What is new? What is next?\n\n\n\nby  \n\n\n\nIrene Martinez Carrasco \n\n\n\nBICU facility manager and Senior research engineer at the Department of Medical Biochemistry and Biophysics\, Department of Integrative Medical Biology (IMB) \n\n\n\nJohan Olofsson Edlund \n\n\n\nResearch engineer at the Department of Medical Biochemistry and Biophysics \n\n\n\nand \n\n\n\nFouzia Bano \n\n\n\nSenior research engineer at the Department of Clinical Microbiology \n\n\n\nSign up (latest by Monday\, 17 April\, 10 a.m.) for on-site attendance to reserve your free lunch sandwich. \n\n\n\nRead more\n\n\n\nAbstract: \n\n\n\nDuring the seminar\, we will present the latest news at The Biochemical Imaging Centre Umeå (BICU) and a new emerging facility: The Biomolecule Characterization Unit (BMCU). \n\n\n\nThe Biochemical Imaging Centre Umeå (BICU) is an open-access imaging centre that provides state-of-the-art microscopy technology to researchers all over Sweden. We provide access and training to a wide range of instruments and techniques\, including widefield\, confocal\, spinning disc\, Tirf microscopy\, FLIM\, FLIM-FRET\, FRAP and super-resolution microscopy on live cells for an optimal spatial and temporal resolution. Furthermore\, the centre provides access to atomic force microscopy (AFM) to generate topographical images and measure mechanical properties of samples. \n\n\n\nAt The Biomolecule Characterization Unit\, we offer a comprehensive suite of cutting-edge technologies to help you gain a deeper understanding of molecular interactions and biomolecular structures. Our platform features state-of-the-art SPR\, ITC\, CD\, and QCMD technologies\, which provide complementary information on biomolecular interactions\, thermodynamics\, kinetics\, and structural characterization.
URL:https://www.scilifelab.se/event/bicu-and-biomolecule-characterization-unit/
LOCATION:Glasburen Seminar Room\, Chemical Biological Centre (KBC) Building\, Umeå University\, Umeå\, 901 87\, Sweden
CATEGORIES:Event
ORGANIZER;CN="SciLifeLab Ume%C3%A5":MAILTO:umea@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230420T120000
DTEND;TZID=Europe/Stockholm:20230420T130000
DTSTAMP:20260403T211531
CREATED:20230101T212254Z
LAST-MODIFIED:20230417T072528Z
UID:10000771-1681992000-1681995600@www.scilifelab.se
SUMMARY:Campus Solna Seminar Series: Ludvig Bergenstråhle and Karl Olofsson
DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an  initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nThis week:\n\n\n\n\n\n\nLudvig Bergenstråhle\n\n\n\nJoakim Lundeberg – alpha 3 \n\n\n\nStationary generative models by contrastive adjustment \n\n\n\n\n\nKarl Olofsson\n\n\n\nMartin Viklund – gamma 3 \n\n\n\nMulticellular tumor diskoids: a 3D cell culture geometry optimized for live cell imaging \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page.
URL:https://www.scilifelab.se/event/campus-solna-seminar-series-apr-20/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Community
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/09/IMG_20221103_124630107_HDR-scaled.jpg
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230420T140000
DTEND;TZID=Europe/Stockholm:20230420T160000
DTSTAMP:20260403T211531
CREATED:20230331T082931Z
LAST-MODIFIED:20230331T083027Z
UID:10000847-1681999200-1682006400@www.scilifelab.se
SUMMARY:Unleashing the Power of Single-Cell Multi-Modal Analysis
DESCRIPTION:Join Mission Bio for an interactive session about the latest advances and applications of single-cell technologies. We will start with a 1h overview on the following topics: \n\n\n\n\nTechnology overview & applications\n\n\n\nSingle cell MRD-detection with higher detection sensitivity\n\n\n\nCAR-T: treatment studies and quality control\n\n\n\nSingle-cell DNA-metylation in hematological malignancies\n\n\n\nClonal tumor profiling in solid tumor\n\n\n\n\nThe 2nd part will be an open forum to discuss applications\, protocols\, experimental planning and pipeline overview. \n\n\n\nSpeaker\n\n\n\nSimone Formisano is Technical Application Liaison at Mission Bio. He obtained his Master’s Degree in Biotechnology at Columbia University\, New York City (United States). Before joining Mission Bio in 2022\, Simone completed his Doctorate experimental work in cancer immunotherapy at Ludwig Maximilian University of Munich. Afterward\, he contributed to the clinical development of several therapies in solid oncology by joining Daiichi Sankyo as a Medical Science Liaison. \n\n\n\nContact\n\n\n\nIda Höijer (ida.hoijer@scilifelab.uu.se)Malin Melin (malin.melin@scilifelab.uu.se)
URL:https://www.scilifelab.se/event/unleashing-the-power-of-single-cell-multi-modal-analysis/
LOCATION:Room Waldenström\, Rudbeck Laboratory\, Dag Hammarskjölds Väg 20\, Uppsala\, 752 37\, Sweden
CATEGORIES:Event
ORGANIZER;CN="Clinical Genomics Uppsala":MAILTO:clinicalgenomicsuppsala@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230421T090000
DTEND;TZID=Europe/Stockholm:20230421T093000
DTSTAMP:20260403T211531
CREATED:20230201T124434Z
LAST-MODIFIED:20230223T104655Z
UID:10000799-1682067600-1682069400@www.scilifelab.se
SUMMARY:[Clinical Talks] Molecular Pixelation: unlocking the power of single cell proteomics
DESCRIPTION:Alvaro Martinez Barrio and Filip Karlsson\n\n\n\n\n\n\n\nÁlvaro Martinez BarrioÁlvaro brings 15+ year in the computational biology field to Pixelgen. He has worked in NGS tech/analysis for over 10 years. Before Pixelgen Álvaro was a single-cell expert and group leader at 10X Genomics. Álvaro is one of the co-founders of Pixelgen Technologies. \n\n\n\n \n\n\n\n\n\n\n\nFilip KarlssonFilip has 10+ years of track record of product development in biotech start-ups using RCA with SureSelect (Halo Genomics now Agilent) and Vanadis NIPT (PerkinElmer). He is the co-inventor of Molecular Pixelation and one of the co-founders of Pixelgen Technologies. \n\n\n\nPixelgen Technologies \n\n\n\nPixelgen Technologies AB was founded in 2020 by a team of passionate\, experienced innovators and entrepreneurs with a vision to bring a new spatial understanding to biology by mapping cell surface proteins and their spatial inter-relationships. The company has developed Molecular Pixelation\, a DNA-based visualization technology for analyzing cell surface proteins\, to gain novel insights into cellular activity that will advance better medicines and diagnostics. Pixelgen is headquartered in Stockholm\, Sweden. \n\n\n\n \n\n\n\nregister to receive zoom link\n\n\n\nModerator: Michael Akhras and Päivi Östling \n\n\n\n\n\n\n\n \n\n\n\nClinical Talks\n\n\n\nClinical Talks is back for more! With a brand new and shiny Season 6. After successfully completing 5 seasons with > 70 enthusiastic Clinical Talkers to our record\, we have barely scratched the surface of all the amazing work our clinical\, academic and industry Life Science community has to offer. More about the upcoming events is available here. \n\n\n\nThese events are co-organized by Karolinska Institutet Innovations AB and SciLifeLab\, together with Colibri Ventures.
URL:https://www.scilifelab.se/event/clinical-talks-molecular-pixelation/
LOCATION:Online event via Zoom
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/08/Square-500x500-Clinical-Talks@4x.png
ORGANIZER;CN="Clinical Talks":MAILTO:precisionmedicine@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230424T090000
DTEND;TZID=Europe/Stockholm:20230428T153000
DTSTAMP:20260403T211531
CREATED:20230223T130931Z
LAST-MODIFIED:20230223T131154Z
UID:10000820-1682326800-1682695800@www.scilifelab.se
SUMMARY:NBIS/ELIXIR-SE Tools for Reproducible Research - ONLINE
DESCRIPTION:NBIS / ELIXIR-SE course is open for PhD students\, postdocs\, group leaders and core facility staff interested in making their computational analysis more reproducible. International applications are welcome\, but we will give approximately half of the participant slots to applicants from Swedish universities at minimum\, due to the national role NBIS plays in Sweden. \n\n\n\nResponsible teachers: Erik Fasterius\, John Sundh \n\n\n\nContact information: edu.trr@nbis.se \n\n\n\n\n\n\n\n\n\nApplication\n\n\n\n\n\nCourse website\n\n\n\n\n\n\n\nImportant dates\n\n\n\nApplication open: Feb 27\, 2023 \n\n\n\nApplication deadline: Mar 31\, 2023 \n\n\n\nConfirmation to accepted participants: Apr 7\, 2023 \n\n\n\n\n\n\n\nCourse fee\n\n\n\nThis online training event has no fee. However\, if you accept a position at the workshop and do not participate (no-show) you will be invoiced 2\,000 SEK.*Please note that NBIS cannot invoice individuals \n\n\n\n\n\n\n\nCourse description\n\n\n\nOne of the key principles of proper scientific procedure is the act of repeating an experiment or analysis and being able to reach similar conclusions. Published research based on computational analysis\, e.g. bioinformatics or computational biology\, have often suffered from incomplete method descriptions (e.g. list of used software versions); unavailable raw data; and incomplete\, undocumented and/or unavailable code. This essentially prevents any possibility of attempting to reproduce the results of such studies. The term “reproducible research” has been used to describe the idea that a scientific publication based on computational analysis should be distributed along with all the raw data and metadata used in the study\, all the code and/or computational notebooks needed to produce results from the raw data\, and the computational environment or a complete description thereof. \n\n\n\nReproducible research not only leads to proper scientific conduct but also provides other researchers the access to build upon previous work. Most importantly\, the person setting up a reproducible research project will quickly realize the immediate personal benefits: an organized and structured way of working. The person that most often has to reproduce your own analysis is your future self! \n\n\n\n\n\n\n\nCourse content\n\n\n\nTopics covered \n\n\n\n\nGood practices for data analysis\n\n\n\nVersion control and collaborative code development\n\n\n\nPackage and environment management\n\n\n\nWorkflow management\n\n\n\nDocumentation and reporting\n\n\n\nContainerized computational environments\n\n\n\n\n\n\n\n\nLearning outcomesBy the end of the course the student will be able to: \n\n\n\n\nOrganize and structure computational projects\n\n\n\nTrack changes and collaborate on code using Git\n\n\n\nInstall packages and manage software environments using Conda\n\n\n\nStructure computational steps into workflows with Snakemake and Nextflow\n\n\n\nCreate automated reports and document their analyses with RMarkdown and Jupyter\n\n\n\nPackage and distribute computational environments using Docker and Singularity\n\n\n\n\n\n\n\n\nEntry requirements\n\n\n\nRequired for being able to follow the course and to complete computer exercises: \n\n\n\n\nFamiliarity with using the terminal (e.g. be familiar with commands such as ls\, cd\, touch\, mkdir\, pwd\, wget\, man\, etc.)\n\n\n\nA computer with a webcam\n\n\n\nYou will be asked to install the video conferencing software zoom (https://zoom.us/) to be able to participate in the course\n\n\n\nSome knowledge in R and/or python is beneficial but not strictly required\n\n\n\n\n\n\n\n\nSelection criteria\n\n\n\nThe course can accommodate 20 participants. Selection criteria include correct entry requirements\, motivation to attend the course as well as gender and geographical balance. Academic affiliated registrants are prioritized prior to participants from the industry.  \n\n\n\nPlease note that NBIS training events do not provide any formal university credits. The training content is estimated to correspond to a certain number of credits\, however the estimated credits are just guidelines. If formal credits are crucial\, the student needs to confer with the home department before submitting a course application in order to establish whether the course is valid for formal credits or not.
URL:https://www.scilifelab.se/event/nbis-elixir-se-tools-for-reproducible-research-online-3/
LOCATION:Online event via Zoom
CATEGORIES:Course
ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230424T090000
DTEND;TZID=Europe/Stockholm:20230428T170000
DTSTAMP:20260403T211531
CREATED:20230118T132842Z
LAST-MODIFIED:20230118T133136Z
UID:10000790-1682326800-1682701200@www.scilifelab.se
SUMMARY:Introduction to Biostatistics and Machine Learning
DESCRIPTION:National course open for PhD students\, postdocs\, researchers and other employees in need of biostatistical and machine learning skills within all Swedish universities. The course is geared towards life scientists wanting to be able to understand and use basic statistical methods. It would also suit those already applying biostatistical methods but have never got a chance to reflect on and truly grasp the basic statistical concepts\, such as the commonly misinterpreted p-value. \n\n\n\n \n\n\n\nImportant dates\n\n\n\nApplication open: now \n\n\n\nApplication closes: 2023-02-24 \n\n\n\nConfirmation to accepted students:  2023-03-10 \n\n\n\nResponsible teachers:  Olga Dethlefsen\, Eva Freyhult \n\n\n\nIf you do not receive information according to the above dates please contact olga.dethlefsen@nbis.se\, eva.freyhult@nbis.se \n\n\n\n\n\n\n\n\n\nLink to Application\n\n\n\n\n\nCourse website\n\n\n\n\n\n\n\n\n\nCourse fee\n\n\n\nA course fee* of 2000 SEK will be invoiced to accepted participants. The fee includes lunches\, coffee and snacks. \n\n\n\n*Please note that NBIS cannot invoice individuals \n\n\n\n\n\n\n\nCourse content\n\n\n\n\nProbability theory\n\n\n\nHypothesis testing and confidence intervals\n\n\n\nResampling\n\n\n\nLinear regression methods\n\n\n\nIntroduction to generalized linear models\n\n\n\nModel evaluation\n\n\n\nUnsupervised learning incl. clustering and dimension reduction methods\n\n\n\nSupervised learning incl. classification\n\n\n\n\n\n\n\n\nEducation\n\n\n\nIn this course we focus on an active learning approach. The course participants are expected to do some pre-course reading and exercises\, corresponding up to 40h studying. The education consists of teaching blocks alternating between lectures\, group discussions\, live coding sessions etc. \n\n\n\n\n\n\n\nEntry requirements\n\n\n\n\nBasic R programming skills (check your skills by taking our self-assessment test)\n\n\n\nBYOL (bring your own laptop) with R and RStudio installed\n\n\n\nNo prior biostatistical knowledge is assumed\, only basic math skills (pre-course studying materials will be available upon course acceptance)\n\n\n\n\n\n\n\n\nThe course can accommodate a maximum of 25 participants. If we receive more applications\, participants will be selected based on several criteria. Selection criteria include correct entry requirements\, motivation to attend the course as well as gender and geographical balance.
URL:https://www.scilifelab.se/event/introduction-to-biostatistics-and-machine-learning-2/
LOCATION:Navet\, SciLifeLab Uppsala\, SciLifeLab Uppsala\, BMC C11\, Husargatan 3\, Uppsala\, 75237\, Sweden
CATEGORIES:Course
ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230424T123000
DTEND;TZID=Europe/Stockholm:20230425T143000
DTSTAMP:20260403T211531
CREATED:20230301T152415Z
LAST-MODIFIED:20230412T152145Z
UID:10000825-1682339400-1682433000@www.scilifelab.se
SUMMARY:Three Decades of Genomics:  From PCR to Precision Medicine
DESCRIPTION:Ann-Christine Syvänen moved from Helsinki\, Finland to Uppsala in 1998. In 2001 she was appointed professor in Molecular Medicine at the Department of Medical Sciences at Uppsala University. After 20 years as a research group leader and director of the SNP&SEQ Technology Platform\, followed by five years as senior professor at Uppsala University\, she retired in 2022. This open symposium brings together her former colleagues from Finland\, as well as coworkers and former students in Uppsala to celebrate the progress in Human Genomics during the past three decades and future prospects for Genomics in Precision Medicine. \n\n\n\n\n\n\nOrganizers: Ann-Christine Syvänen\, Jessica Nordlund\, Ulrika Liljedahl \n\n\n\nContact for questions: Ulrika Liljedahl\, Ulrika.Liljedahl@medsci.uu.se \n\n\n\n\n\n\n\n\n\n\n\n\nRegistration\n\n\n\nRegistration is mandatory\, deadline April 17\, 2023 \n\n\n\nRegister here\n\n\n\n\n\n\n\nThis event is sponsored by: \n\n\n\n\n\n\n\n\n\nKAW\n\n\n\n\n\nSciLifeLab\n\n\n\n\n\nNavinci\n\n\n\n\n\nNGI\n\n\n\n\n\n\n\n\n\nProgram overview\n\n\n\nFull program\, printable Pdf \n\n\n\n \n\n\n\nDay 1\, Monday April 24\, 2023\n\n\n\n12.30-14.30 Session I: First decade of genomics\, and before. Chair Ann-Christine Syvänen \n\n\n\nAnn-Christine Syvänen\, Prof. em. Dept of Medical Sciences\, Uppsala University\, Sweden \n\n\n\nHans Söderlund\, Prof. em. Technical Research Centre of Finland (VTT) \n\n\n\nAntti Sajantila\, Dept of Forensic Medicine\, University of Helsinki\, Finland \n\n\n\nAarno Palotie\, The Broad Institute of MIT and Harvard\, Cambridge\, USA & Institute for Molecular Medicine\, (FIMM)\, University of Helsinki\, Finland \n\n\n\n15.00-17.00 Session II: Disease genetics and genomics. Chair Jessica Nordlund \n\n\n\nIvo Gut\, Centro Nacional de Analisis Genomico\, Barcelona\, Spain \n\n\n\nLars Rönnblom\, Dept of Medical Sciences\, Uppsala University\, Sweden \n\n\n\nGunnel Nordmark \, Dept of Medical Sciences\, Uppsala University\, Sweden \n\n\n\nTuuli Lappalainen\, New York Genome Centre\, USA\, SciLifeLab and KTH Royal Institute of Technology\, Stockholm\, Sweden \n\n\n\n\n\n\n\nDay 2\, Tuesday April 25\, 2023\n\n\n\n9.30-11.30 Session III: Translational genomics and drug development. Chair Gunnel Nordmark \n\n\n\nOlli Kallioniemi\, SciLifeLab and Dept of Oncology & Pathology\, Karolinska Institutet\, Stockholm\, Sweden \n\n\n\nAnna Kiialainen\, Genentech Research and Early Development\, Hoffmann-La Roche\, Basel\, Switzerland \n\n\n\nMaria Lagerström\, Biopharmaceuticals R&D\, AstraZeneca \n\n\n\nJessica Nordlund\, Dept of Medical Sciences\, Uppsala University\, Sweden \n\n\n\nHåkan Melhus\, Dept of Medical Sciences\, Uppsala University\, Sweden \n\n\n\n12.30-14.30 Session IV: Genomics technology: past\, present and future. Chair Lars Feuk \n\n\n\nUlf Landegren\, Dept of Immunology\, Genetics and Pathology Uppsala University\, Sweden \n\n\n\nElin Grundberg\, Children’s Mercy Hospital and University of Missouri\, Kansas City\, USA \n\n\n\nMats Nilsson\, SciLifeLab and Dept of Biochemistry and Biophysics\, Stockholm University \n\n\n\nDavid Klenerman\, University of Cambridge\, United Kingdom \n\n\n\nAnn-Christine Syvänen\, Prof. em. Dept of Medical Sciences\, Uppsala University\, Sweden
URL:https://www.scilifelab.se/event/three-decades-of-genomics-from-pcr-to-precision-medicine/
LOCATION:BMC\, The Svedberg Lecture Hall (B8)\, Husargatan 3\, Uppsala\, 752 37\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2023/03/ResearchLogo-002-e1677683793531.jpg
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230424T151500
DTEND;TZID=Europe/Stockholm:20230424T161500
DTSTAMP:20260403T211531
CREATED:20230331T130042Z
LAST-MODIFIED:20230331T130044Z
UID:10000848-1682349300-1682352900@www.scilifelab.se
SUMMARY:[The Svedberg seminar] - Copy-Number Changes During Experimental Evolution in Caenorhabditis elegans: Rate\, Fitness Effects and Context-Dependence
DESCRIPTION:VAISHALI KATJU \, Professor \n\n\n\nProgram in Evolutionary Biology \n\n\n\nDepartment of Ecology & Genetics \n\n\n\nUppsala University \n\n\n\n\n\n\n\n\n\n\n\nBio\n\n\n\nProf. Katju is an evolutionary geneticist whose research combines the power of experimental evolution with the model nematode C. elegans and high-throughput genomics to address fundamental questions in biology and evolution regards the rates\, fitness effects and evolutionary dynamics of spontaneous mutations. Her current and future research program is focused on investigating (i) the consequences of spontaneous mutation under varying intensity of selection\, (ii)mitochondrial evolution and the genetic architecture of mitonuclear interactions and (iii) the transcriptional and functional consequences of copy-number changes during adaptation. \n\n\n\nD. Katju earned her Ph.D. in Evolutionary Genetics from Indiana University-Bloomington\, USA in 2004 under the supervision of Dr. Michael Lynch. Following the completion of a National Science Foundation funded Postdoctoral Research Fellowship in Biological Informatics\, she served as a faculty member (Assistant and Associate Professor) in the Department of Biology at the University of New Mexico from 2007-2015. From 2015-2022\, she was a faculty member (Associate and full Professor) in the Department of Veterinary Integrative Biosciences in the College of Veterinary Medicine at Texas A&M University. In 2022\, she joined the Department of Ecology and Genetics at Uppsala University as a Professor. \n\n\n\n \n\n\n\nCopy-Number Changes During Experimental Evolution in Caenorhabditis elegans: Rate\, Fitness Effects and Context-Dependence\n\n\n\n \n\n\n\nThe genomic era has revealed that gene copy-number differences due to gene duplications and deletions are rampant in natural populations. Yet\, base substitutions as a mutational class have dominated the field of evolutionary biology as the main contributor to genetic variation leading to evolution. Herein\, I briefly explore the history of the field\, from the neo-Darwinian synthesis through Ohno’s canonical model for the evolution of gene duplicates and its failure to encapsulate the full complexity of the duplication process. Lastly\, I present results from three long-term experimental evolution experiments in Caenorhabditis elegans that investigate fundamental properties of copy-number variants (CNVs)\, including (i) direct estimates of their rates of origin\, (ii) evidence that CNVs constitute a common mechanism of adaptive genetic change during compensatory evolution\, and (iii) evidence that duplications and deletions of highly transcribed genes are detrimental to fitness and a role for selection against an increase in transcript abundance. \n\n\n\nHost: Leif Andersson leif.andersson@imbim.uu.se  UU
URL:https://www.scilifelab.se/event/the-svedberg-seminar-copy-number-changes-during-experimental-evolution-in-caenorhabditis-elegans-rate-fitness-effects-and-context-dependence/
LOCATION:BMC Room C8:301\, Husargatan 3\, Uppsala\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/02/Picture1-The-Svedberg.png
ORGANIZER;CN="The Svedberg Seminar Series":MAILTO:thesvedberg@scilifelab.uu.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230425T150000
DTEND;TZID=Europe/Stockholm:20230425T180000
DTSTAMP:20260403T211531
CREATED:20230316T092531Z
LAST-MODIFIED:20230420T064935Z
UID:10000837-1682434800-1682445600@www.scilifelab.se
SUMMARY:Opening of Coalescence; Scientific research through an artist’s lens
DESCRIPTION:Welcome to the opening of the exhibition Coalescence; Scientific research through an artist’s lens at SciLifeLab’s Solna campus.  \n\n\n\nThe exhibition will feature work by 16 artists from the Royal Institute of Art\, created in individual collaborations with 33 researchers from SciLifeLab.  \n\n\n\nThe collaborations were set up as a new program at SciLifelab\, started by SciLifeLab researcher Max Frankel\, to connect the artistic and scientific communities in Stockholm. \n\n\n\nThere will be temporary artwork\, talks\, and drinks both in Air&Fire and in the Delta lobby.  The exhibition in the Delta lobby is open to the public during SciLifeLab’s typical hours\, from April 26th until May 8th.  \n\n\n\n \n\n\n\nPlease register if you’d like to attend the opening. The event is free of charge. \n\n\n\nRegistration\n\n\n\nNews: Scientific research through an artist’s lens – first meeting
URL:https://www.scilifelab.se/event/opening-of-coalescence-scientific-research-through-an-artists-lens/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230427T080000
DTEND;TZID=Europe/Stockholm:20230428T170000
DTSTAMP:20260403T211531
CREATED:20230331T125157Z
LAST-MODIFIED:20230331T125455Z
UID:10000849-1682582400-1682701200@www.scilifelab.se
SUMMARY:Nordic Precision Medicine Forum
DESCRIPTION:Following the success over the past 6 year of our annual Nordic Precision Medicine Forum we are excited to announce that in 2023 we have a new venue and TWO NEW EVENTS. This allows us to convene a broader group of experts\, from more disciplines\, across all of the key stakeholders\, in one place. \n\n\n\nAs Precision Medicine initiatives around the world gather pace\, the Nordic countries are in an enviable position when it comes to joining all the dots. The link between digital health\, omics technologies\, artificial intelligence and data means that yet more collaboration is required to ensure the success of precision medicine. As demonstrated by organisations such as SciLifeLab\, the collaborative efforts of healthcare\, research\, industry and patient organisations is really starting to bear fruit. \n\n\n\nThe lines between the different disciplines involved in precision medicine are often blurred\, so to bring all of the people together we have created three unique meetings which allow our attendees to move freely between different areas of interest. \n\n\n\nThrough a combination of keynotes\, presentations\, panel discussions\, breakouts and networking opportunities\, you will have access to those who are shaping the digital health revolutions across the region\, under one roof\, over two days. \n\n\n\nPlacing all the experts from the Precision Medicine ecosystem in one place at one time allows for the very essence of what many say is the key to precision medicine – collaboration. We look forward to seeing you in Stockholm on 27-28 April 2023. \n\n\n\nRead more\n\n\n\nWe very much hope to see you in Stockholm in April 2023!
URL:https://www.scilifelab.se/event/nordic-precision-medicine-forum-2/
LOCATION:München Bryggeriet\, Torkel Knutssongatan 2\, Stockholm\, 11825\, Sweden
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230427T120000
DTEND;TZID=Europe/Stockholm:20230427T130000
DTSTAMP:20260403T211531
CREATED:20230101T212646Z
LAST-MODIFIED:20230420T081437Z
UID:10000772-1682596800-1682600400@www.scilifelab.se
SUMMARY:Campus Solna Seminar Series: Dimitris Kanellis
DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an  initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nThis week:\n\n\n\n\n\n\nDimitris Kanellis\n\n\n\nJiri Bartek – alpha 5 \n\n\n\nCuET: one metabolite to kill’em all \n\n\n\n \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page.
URL:https://www.scilifelab.se/event/campus-solna-seminar-series-apr-27/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Community
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/09/IMG_20221103_123412496_HDR2-scaled.jpg
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230427T150000
DTEND;TZID=Europe/Stockholm:20230427T170000
DTSTAMP:20260403T211531
CREATED:20230317T102909Z
LAST-MODIFIED:20230317T113319Z
UID:10000840-1682607600-1682614800@www.scilifelab.se
SUMMARY:Matchmaking Event: Data Science and Medical/Clinical/Healthcare Research Project Call 2024
DESCRIPTION:Welcome to a matchmaking in SciLifeLab between Data Science and Medical/Clinical/Healthcare research at Karolinska Institutet\, KTH and Region Stockholm\, related to the Health\, Medicine and Technology (HMT) Project Call 2024 (opens on 13 April). Following the success of the event last year we invite you to participate in another matchmaking event to find research partners for the upcoming call. A key requirement to apply is that one partner is from KTH and one from Region Stockholm.  \n\n\n\nRead more
URL:https://www.scilifelab.se/event/matchmaking-event-data-science-and-medical-clinical-healthcare-research-project-call-2024/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2020/02/kth_logotyp_pms_2013.jpg
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230428T150000
DTEND;TZID=Europe/Stockholm:20230428T163000
DTSTAMP:20260403T211531
CREATED:20230414T095927Z
LAST-MODIFIED:20230417T065941Z
UID:10000860-1682694000-1682699400@www.scilifelab.se
SUMMARY:BAM Seminar: Career transition from academia to biosafety officer at Valneva
DESCRIPTION:As part of our “Biology At Most” seminar series we invite speakers from all types of life science career paths. They will share their visions\, perspectives and expertise in their field in a informal environment. \n\n\n\nThe Guest is Dr. Shawon Gupta\n\n\n\n\n\n\n\nDr. Shawon Gupta is currently working as a biosafety officer at Valneva\, a multinational vaccine company based in Stockholm. Shawon carried out his PhD studies at Karolinska Institutet followed by a PostDoc at Heidelberg University and has since made a successful transition from academia to industry. During the talk\, he will share insights on his career journey\, including the challenges he faced and how he overcame them. Shawon will also discuss his current work as a biosafety officer\, giving you a glimpse in his world.  \n\n\n\nThis event is mainly aimed at PhD students and Postdocs\, but researchers in all stages of their career are of course welcome to attend. Join us as we highlight real-life success stories and provide valuable insights on how to make a transition as smooth as possible. \n\n\n\nYou can join the meeting in person or via zoom (Meeting ID: 616 1985 4442). We will have time for fika and mingling after the seminar. Please register via the google form until April 25th to be considered for the fika. \n\n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page.
URL:https://www.scilifelab.se/event/bam-seminar-valneva/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Community
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/11/BAM.jpg
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230502T080000
DTEND;TZID=Europe/Stockholm:20230502T170000
DTSTAMP:20260403T211531
CREATED:20230421T081435Z
LAST-MODIFIED:20230421T081436Z
UID:10000865-1683014400-1683046800@www.scilifelab.se
SUMMARY:FIB-SEM - Imaging and Micro-manipulation
DESCRIPTION:In the frame of the “SciLifeLab Site Umeå / KBC Infrastructure Seminar Series”\, the seminars will be organised every second Tuesday during spring 2023. The seminars will be held in a hybrid format IRL in Glasburen\, KBC\, and online via Zoom. Learn more about the seminar series and Schedule for Spring 2023 here. \n\n\n\nOn May 2nd\, 12:00-13:00\, SciLifeLab Site Umeå / KBC Infrastructure Seminar Series presents: \n\n\n\nFIB-SEM – Imaging and Micro-manipulation\n\n\n\nby  \n\n\n\nSara Henriksson\, Umeå Centre for Electron Microscopy (UCEM)\, Head of TEM unit\, Facility manager\, SciLifeLab contact for FIB-SEM  \n\n\n\nand \n\n\n\nCheng Choo Lee (Nikki)\, Umeå Centre for Electron Microscopy (UCEM)\, Head of SEM unit\, Facility manager \n\n\n\nRead more
URL:https://www.scilifelab.se/event/fib-sem-imaging-and-micro-manipulation/
LOCATION:Glasburen Seminar Room\, Chemical Biological Centre (KBC) Building\, Umeå University\, Umeå\, 901 87\, Sweden
CATEGORIES:Event
ORGANIZER;CN="SciLifeLab Ume%C3%A5":MAILTO:umea@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230502T080000
DTEND;TZID=Europe/Stockholm:20230502T170000
DTSTAMP:20260403T211531
CREATED:20230504T123021Z
LAST-MODIFIED:20230508T072522Z
UID:10000880-1683014400-1683046800@www.scilifelab.se
SUMMARY:NBIS and CASP - feeling lost in data? We are here to help
DESCRIPTION:In the frame of the “SciLifeLab Site Umeå / KBC Infrastructure Seminar Series”\, the seminars will be organised every second Tuesday during spring 2023. The seminars will be held in a hybrid format IRL in Glasburen\, KBC\, and online via Zoom. Learn more about the seminar series and Schedule for Spring 2023 here. \n\n\n\nOn May 16th\, 12:00-13:00\, SciLifeLab Site Umeå / KBC Infrastructure Seminar Series presents: \n\n\n\nNBIS and CASP – feeling lost in data? We are here to help! \n\n\n\nby  \n\n\n\nJeanette Tångrot\, NBIS expert and Senior research engineer at the Department of Molecular Biology \n\n\n\nand \n\n\n\nKate Bennett\, CASP platform manager and Research coordinator at the Department of Chemistry \n\n\n\n\nSign up (latest by Monday\, 15 May\, 10 a.m.) for on-site attendance to reserve your free lunch sandwich: \n\n\n\nRegister\n\n\n\nor follow online via Zoom: https://umu.zoom.us/j/63138997026 (registration is not required). \n\n\n\n\nAbstract: \n\n\n\nThe Computational Analytics Support Platform (CASP) is a data analytics service at Umeå University\, while the National Bioinformatics Infrastructure Sweden (NBIS) is a distributed national research infrastructure providing bioinformatics support\, infrastructure and training. In this seminar\, we will describe the different types of services provided by both CASP and NBIS\, helping researchers make the most out of their data. \n\n\n\nCASP is a co-funded KBC infrastructure that primarily supports\, but also trains life scientists in the analysis of experimental data using advanced data-driven tools and strategies. We focus on the analysis of data from a wide range of technologies including\, but not limited to\, downstream omics (metabolomics/proteomics)\, spectroscopy and imaging. Since the platform was launched in 2021\, CASP has supported multiple researchers across departments and faculties convert complex data into meaningful biological and chemical interpretations. \n\n\n\nNBIS is the SciLifeLab bioinformatics platform and the Swedish node in ELIXIR. NBIS has staff at six sites\, including Umeå. We provide expertise in most areas of bioinformatics\, including omics analysis\, genome assembly/annotation\, image analysis and biostatistics. We provide weekly online drop-in sessions and free consultation meetings\, as well as hands-on project support ranging from assistance with smaller tasks to long-term engagement. We also offer support in data management and systems development\, such as tools\, pipelines\, and interactive websites. In addition\, we provide both introductory and advanced training events. \n\n\n\n\nMore information about CASP: https://www.umu.se/en/research/infrastructure/computational-analytics-support-platform-casp/ \n\n\n\n NBIS: https://nbis.se/ \n\n\n\n\nRead more
URL:https://www.scilifelab.se/event/nbis-and-casp-feeling-lost-in-data-we-are-here-to-help/
LOCATION:Glasburen Seminar Room\, Chemical Biological Centre (KBC) Building\, Umeå University\, Umeå\, 901 87\, Sweden
CATEGORIES:Event
ORGANIZER;CN="SciLifeLab Ume%C3%A5":MAILTO:umea@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230504T120000
DTEND;TZID=Europe/Stockholm:20230504T130000
DTSTAMP:20260403T211531
CREATED:20230101T213814Z
LAST-MODIFIED:20230427T141642Z
UID:10000773-1683201600-1683205200@www.scilifelab.se
SUMMARY:Campus Solna Seminar Series: Isabelle Leo and Panagiotis Kalogeropoulos
DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an  initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nThis week:\n\n\n\n\n\n\nIsabelle Leo\n\n\n\nJanne Lehtiö – alpha 1 \n\n\n\nDeciphering cell biology and molecular variation in leukemia using proteomics \n\n\n\n\n\nPanagiotis Kalogeropoulos\n\n\n\nMarc Friedländer – gamma 5 \n\n\n\nDiscovery and characterization of cancer specific miRNAs and other small RNA sequences \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page.
URL:https://www.scilifelab.se/event/campus-solna-seminar-series-may-4/
LOCATION:Milkyway SciLifeLab Solna\, Tomtebodavägen 23\, Solna
CATEGORIES:Community
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/09/IMG_20221103_120135408_HDR-scaled.jpg
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230505T130000
DTEND;TZID=Europe/Stockholm:20230505T150000
DTSTAMP:20260403T211531
CREATED:20230420T160433Z
LAST-MODIFIED:20230420T160437Z
UID:10000863-1683291600-1683298800@www.scilifelab.se
SUMMARY:MethylR - From Sequencer to Publication
DESCRIPTION:Join and learn how to use methylR\, a new online tool from Clinical Genomics Linköping and Bioinformatics\, Core Facility\, Linköping University for methylation data analysis. \n\n\n\nMassimiliano Volpe\, Ph.D\, Jyotirmoy Das\, Ph.D\, methylR: a graphical interface for comprehensive DNA methylation array data analysis\, Bioinformatics\, 2023;\, btad184. \n\n\n\nRead more\n\n\n\nmethylR_flyer_3Download
URL:https://www.scilifelab.se/event/methylr-from-sequencer-to-publication/
LOCATION:Online event via Zoom
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2020/05/AdobeStock_297709311-scaled.jpeg
ORGANIZER;CN="Clinical Genomics Link%C3%B6ping":MAILTO:tobias.strid@liu.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230508T090000
DTEND;TZID=Europe/Stockholm:20230512T170000
DTSTAMP:20260403T211531
CREATED:20230330T125745Z
LAST-MODIFIED:20230330T130447Z
UID:10000846-1683536400-1683910800@www.scilifelab.se
SUMMARY:Workshop in Metabolomics using Nuclear Magnetic Resonance Spectroscopy 
DESCRIPTION:Linköping University together with the Swedish NMR Centre and SwedNMR are pleased to invite to a Workshop in Metabolomics using Nuclear Magnetic Resonance Spectroscopy 8th to 12th of May\, 2023 at Linköping University. The workshop aims to give an overview of NMR based metabolomics for PhD-students and researchers that will apply this technique in their own research. Lectures and seminars/workshops on; overview of metabolomics\, introduction to NMR\, experimental design\, biobanking of samples\, workflow\, sample preparation strategy\, application of multivariate data analysis and clinical applications. The workshop contains practical laboratory exercises using NMR. For PhD students it is also possible to participate in the workshop as a 3hp course. In connection to the workshop a mini-symposium will be organised the 9th of May.  \n\n\n\n\n\n\n\nOrganizers: Swedish NMR Centre and Linköping University \n\n\n\n\n\n\n\nApplication\n\n\n\n\n\nCourse website\n\n\n\n\n\nWorkshop website\n\n\n\n\n\nMini symposium website\n\n\n\n\n\nApplication closes: April 15\, 2023
URL:https://www.scilifelab.se/event/workshop-in-metabolomics-using-nuclear-magnetic-resonance-spectroscopy/
LOCATION:Berzeliussalen\, Entrance 65\, Campus US\, Linköping University
CATEGORIES:Course
ORGANIZER;CN="Swedish NMR Centre":MAILTO:info@nmr.gu.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230508T151500
DTEND;TZID=Europe/Stockholm:20230508T161500
DTSTAMP:20260403T211531
CREATED:20230412T095910Z
LAST-MODIFIED:20230414T114147Z
UID:10000854-1683558900-1683562500@www.scilifelab.se
SUMMARY:[The Svedberg seminar] - Global mapping of protein subcellular location offers a new era of comparative and evolutionary cell biology.
DESCRIPTION:Ross Waller \, Professor of Evolutionary Cell Biology \n\n\n\n Department of Biochemistry \n\n\n\nUniversity of Cambridge\, UK \n\n\n\n \n\n\n\n \n\n\n\nBio\n\n\n\nRoss Waller completed a PhD in 2000 at the University of Melbourne working on the newly discovered remnant plastid in apicomplexan parasites Plasmodium and Toxoplasma. He undertook postdoctoral training from 2000-3 as a Peter Doherty Fellow working on Leishmania cell biology (University of Melbourne)\, and then from 2003-5 as a Canadian Institutes of Health Research working on molecular evolution in diverse eukaryotes at the University of British Columbia. In 2005 be joined the faculty of the School of Botany\, University of Melbourne\, and in 2013 relocated his laboratory to the Department of Biochemistry\, University of Cambridge. \n\n\n\n \n\n\n\nGlobal mapping of protein subcellular location offers a new era of comparative and evolutionary cell biology\n\n\n\nMost of the diversity of eukaryotic life is represented by unicellular organisms\, and most of this has diverged from well-studied model organisms by over a billion years of evolution. Consequently\, while core eukaryotic cellular and molecular biology is often conserved\, this represents only a small fraction of the molecular diversity\, organisation\, and function of most cells. This\, in turn\, severely constrains our ability to infer the biology of most of eukaryotic life from the better-studied models such as animals and fungi. To address the need for de novo characterisation of cells’ molecular diversity we use a spatial proteomics method called LOPIT that simultaneously captures the steady-state subcellular locations of thousands of proteins. We use these new cellular blueprints as springboards to study the evolutionary processes\, adaptations and trajectories that have contributed to eukaryotic cell diversity\, with particular focus on understanding the apicomplexan parasites and their close algal relatives the dinoflagellates. \n\n\n\n \n\n\n\nHost: Fabien Burki\, UU fabien.burki@ebc.uu.se
URL:https://www.scilifelab.se/event/the-svedberg-seminar-global-mapping-of-protein-subcellular-location/
LOCATION:BMC Room C8:301\, Husargatan 3\, Uppsala\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/02/Picture1-The-Svedberg.png
ORGANIZER;CN="The Svedberg Seminar Series":MAILTO:thesvedberg@scilifelab.uu.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230509T080000
DTEND;TZID=Europe/Stockholm:20230511T170000
DTSTAMP:20260403T211531
CREATED:20230413T131100Z
LAST-MODIFIED:20230413T131140Z
UID:10000857-1683619200-1683824400@www.scilifelab.se
SUMMARY:European Chemical Biology Symposium
DESCRIPTION:The free event will combine ELRIG’s inaugural meeting on Therapeutic OLIGOs with the 8th European Chemical Biology Symposium (ECBS) and will be held in Gothenburg\, Sweden from May 9–11. Over the three days\, academia\, industry\, and the vendor community will discuss recent advancements in two ultra-exciting areas of drug discovery and biological research: therapeutic oligonucleotides and chemical biology. \n\n\n\nSpeakers range from breakthrough therapeutic oligo pioneer Frank Bennet\, to the vastly experienced Marie Vikstrom Lindholm of Silence Therapeutics. \n\n\n\nKeynote speakers\n\n\n\nFrank Bennett\, Katherine Donovan\, Steven Dowdy\, Marie Wikstrom Lindholm and Shantanu Singh. \n\n\n\nPresenters\n\n\n\nPetr Bartunek\, Tom Brown\, Peter Crowley\, Samir EL Andaloussi\, Simon Elsässer\, Alice Ghidini\, Aurelie Goyenvalle\, Peter Hagedorn\, Emma Kay\, Stefan Kubicek\, Michael Kurczy\, Pär Matsson\, Cristina Mayor-Ruiz\, Rui Moreira\, Sílvia Osuna\, Andrea Rentmeister\, Chiara Saponaro\, Sabine Sewing. \n\n\n\nRead more
URL:https://www.scilifelab.se/event/european-chemical-biology-symposium/
LOCATION:AstraZeneca\, PGN Entrance\, Pepparedsleden 5\, Mölndal\, 431 53
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230511T100000
DTEND;TZID=Europe/Stockholm:20230511T130000
DTSTAMP:20260403T211531
CREATED:20230502T074324Z
LAST-MODIFIED:20230502T074954Z
UID:10000875-1683799200-1683810000@www.scilifelab.se
SUMMARY:Start discovering with Xenium
DESCRIPTION:Introducing high-performance subcellular spatial profiling made easy with Xenium In Situ. The Xenium platform reveals new insights into cellular structure and function by performing high-throughput mapping of hundreds of RNA targets in their true tissue context. The platform includes a versatile and easy-to-use instrument\, sensitive and specific chemistry\, a diverse menu of customizable panels\, and powerful visualization software. \n\n\n\n\n\nProgram\n\n\n\n9.30Registration10.00Welcome & ISS platform services\, Katarina Tiklova \, ISS SciLifeLab10.15High-performance subcellular spatial profiling with Xenium In-Situ\, Johanna Stergiadou\, 10x genomics11.15Xenium data showcase\, Katarina Tiklova \, ISS\, SciLifeLab11.30Q&A and concluding remarks12.00Lunch & Mingle\n\n\n\nRegistration
URL:https://www.scilifelab.se/event/start-discovering-with-xenium/
LOCATION:Ragnar Granit\, Biomedicum\, Solnavägen 9\, Solna\, 17165
CATEGORIES:Event
ORGANIZER;CN="In Situ Sequencing Unit Scilifelab":MAILTO:iss@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20230511T120000
DTEND;TZID=Europe/Stockholm:20230511T130000
DTSTAMP:20260403T211531
CREATED:20230101T214112Z
LAST-MODIFIED:20230504T070256Z
UID:10000774-1683806400-1683810000@www.scilifelab.se
SUMMARY:Campus Solna Seminar Series: Christian Gnann
DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an  initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nThis week:\n\n\n\n\n\n\nChristian Gnann\n\n\n\nEmma Lundberg – alpha 2 \n\n\n\nMetabolic Moonlighting and Heterogeneity Metabolic Moonlighting and Heterogeneity Create Phenotypic Diversity in Human Cells \n\n\n\n\n\n\n\n\n\n \n\n\n\n \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page.
URL:https://www.scilifelab.se/event/campus-solna-seminar-series-may-11/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Community
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/09/IMG_20221103_124630107_HDR-scaled.jpg
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
END:VCALENDAR