BEGIN:VCALENDAR VERSION:2.0 PRODID:-//SciLifeLab - ECPv6.15.18//NONSGML v1.0//EN CALSCALE:GREGORIAN METHOD:PUBLISH X-WR-CALNAME:SciLifeLab X-ORIGINAL-URL:https://www.scilifelab.se X-WR-CALDESC:Events for SciLifeLab REFRESH-INTERVAL;VALUE=DURATION:PT1H X-Robots-Tag:noindex X-PUBLISHED-TTL:PT1H BEGIN:VTIMEZONE TZID:Europe/Stockholm BEGIN:DAYLIGHT TZOFFSETFROM:+0100 TZOFFSETTO:+0200 TZNAME:CEST DTSTART:20220327T010000 END:DAYLIGHT BEGIN:STANDARD TZOFFSETFROM:+0200 TZOFFSETTO:+0100 TZNAME:CET DTSTART:20221030T010000 END:STANDARD BEGIN:DAYLIGHT TZOFFSETFROM:+0100 TZOFFSETTO:+0200 TZNAME:CEST DTSTART:20230326T010000 END:DAYLIGHT BEGIN:STANDARD TZOFFSETFROM:+0200 TZOFFSETTO:+0100 TZNAME:CET DTSTART:20231029T010000 END:STANDARD BEGIN:DAYLIGHT TZOFFSETFROM:+0100 TZOFFSETTO:+0200 TZNAME:CEST DTSTART:20240331T010000 END:DAYLIGHT BEGIN:STANDARD TZOFFSETFROM:+0200 TZOFFSETTO:+0100 TZNAME:CET DTSTART:20241027T010000 END:STANDARD END:VTIMEZONE BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20231003T090000 DTEND;TZID=Europe/Stockholm:20231005T150000 DTSTAMP:20260403T215349 CREATED:20230919T150816Z LAST-MODIFIED:20230928T094717Z UID:10000972-1696323600-1696518000@www.scilifelab.se SUMMARY:Exhibition in Navet at BMC DESCRIPTION:On October 3-5\, between 09.00-15.00\, you have a new opportunity to visit our exhibition in Navet at BMC. This is a chance to receive information and updates from 30 of the leading life science companies in Sweden. The entrance to Navet will be open between 09:00-10:00 and 13:00-14:00 for external visitors. \n\n\n\n\n\n\n\n\n\nTuesday\, Oct 3 \n\n\n\nAH DiagnosticsWe help laboratories within life science and diagnostics to reach optimal performance by providing innovative quality products and full workflow solutions. \n\n\n\nBio-TechneBio-Techne´s family of brands includes R&D Systems\, Novus Biologicals\, Tocris\, Protein Simple\, ACD and Exosome Dx\, creating a unique portfolio of products & services to empower researchers in Life Science & Clinical Diagnostics. \n\n\n\nBioNordika \n\n\n\nEppendorfEppendorf in the house\, Navet October 3rd! \n\n\n\nMove-it pipettes\, first centrifuge with “green cooling”\, lab consumables made from recycled cooking oils\, new PCR and competitions. \n\n\n\nKem-En-Tec Nordic \n\n\n\nSENSE Multilabel Plate Reader\, Mirus Transfection reagents Efficient\, Low Toxic\, Instant Coomasie Stain 15 min w/o washes\, Antibodies and ELISA kits\, Metabolomic kits\, DNA/RNA extraction kits \n\n\n\nMercodiaFocuses on the development and manufacturing of immunoassays for research and clinical diagnostics\, as well as offering bioanalytical services to pharma- and biotech companies. \n\n\n\nMicromedicMicromedic provides a range of products for microscopy. The portfolio includes brands like Leica Microsystems (microscopes)\, Ibidi (consumable for live cell imaging) and SunJinLab (clearing reagents). \n\n\n\nNordic BioLabsDistributor representing e.g. Promega (enzymes\, reagents)\, Active Motif (epigenetics)\, Lexogen (RNA-seq)\, Invitek (kits)\, Biosearch Technologies (enzymes\, competent cells)\, Cytiva and Capricorn (cell culture) \n\n\n\nPeproTech \n\n\n\nRAMCON ABKombinerar globala produkter och expertis med lokal kunskap för att garantera att våra kunder uppnår bättre resultat på kortare tid. Vi riktar oss till forskare och tillverkare inom industrin\, läkemedel\, kemi och bioteknik. \n\n\n\nThermo Fisher Scientific \n\n\n\n \n\n\n\n\n\nWednesday\, Oct 4 \n\n\n\nAkoya BiosciencesAkoya Biosciences offers comprehensive single-cell imaging solutions that allow researchers to phenotype cells with spatial context and visualize how they organize and interact to influence disease progression and response to therapy. \n\n\n\nBeckman Coulter \n\n\n\nDedicated to developing and providing advanced technologies and equipment for research and discovery to explore new treatment methods. \n\n\n\n \n\n\n\nBecton DickinsonBD Biosciences provides high-quality single cell multiomics (scM) instruments\, reagents\, and bioinformatics tools for reliable\, reproducible scM data \n\n\n\nHyperfine studiosHyperfine Studios\, an animation\, video and illustration production studio. We produce visuals that are scientifically correct and visually appealing. The studio possesses expertise in both science and visual communication. \n\n\n\nMeso Scale \n\n\n\nMettler Toledo \n\n\n\nNordic BioSiteNordic BioSite is a supplier of products for research & diagnostics throughout the Nordics. Let’s talk about your workflow for Genomics and Transcriptomics\, antibodies available in BULK\, and services. \n\n\n\nQiagenQIAGEN delivers Sample to Insight solutions for molecular testing and offers products and services that enable our customers to gain valuable insights from any biological sample – from basic research to clinical healthcare. \n\n\n\nScience ImagingDistributes selected Life Science Products mainly in Scandinavia and Finland. Our goal is to offer comprehensive solutions to the image related problems faced by today’s research communities \n\n\n\nTecan NordicTecan is a Swiss company founded in 1980\, a world-leading provider of automated solutions for laboratories. We develop\, manufacture and distribute our own products worldwide\, with production in Switzerland\, Austria and the USA. \n\n\n\n\n\nThursday\, Oct 5 \n\n\n\nBio-WorksWe supply the biopharmaceutical and biotech industry with WorkBeadsTM chromatography resins and GoBio™ prepacked columns for the purification of a wide range of biomolecules\, e.g. proteins and peptides. \n\n\n\nGenScriptGenscript biotech is global CRO provider of genes\, protein\, peptides and antibodies as a products and services for research and clinical use \n\n\n\nHamilton Nordic \n\n\n\nIntegrated DNA Technologies \n\n\n\nLabLife NordicExciting news for cell- and molecular biosciences\, Label-free cell characterization and sorting\, NGS & single cell sample prep and target enrichment panels\,Oligo synthesis\, Cell assay sample prep\, Cleanup and extraction\, Western blot \n\n\n\nNavinciNavinci is a Swedish biotech company that specializes in developing innovative solutions for the study of protein interactions based on our proprietary proximity ligation technology – Bringing Precision to Spatial Proteomics. \n\n\n\nPacific BiosciencesPacBio is a life science technology company that is providing advanced sequencing solutions that enable scientists to improve their understanding of the genome and ultimately\, resolve genetically complex problems. \n\n\n\nShimadzuShimadzu Sweden provides a broad range of analytical instruments indispensable for research\, development\, and quality control in a variety of fields. \n\n\n\nTakara Bio \n\n\n\nCommitted to helping scientists break new ground with innovative technologies. Our extensive portfolio offers solutions to support advancements across many areas of research\, diagnostics\, & clinical applications \n\n\n\nTechtum LabA distributor of cutting-edge laboratory equipment and solutions for molecular biology research will exhibit at BMC Navet October 5. Live demos of a selection of our instruments! URL:https://www.scilifelab.se/event/exhibition-in-navet-at-bmc-2/ LOCATION:Navet\, SciLifeLab Uppsala\, SciLifeLab Uppsala\, BMC C11\, Husargatan 3\, Uppsala\, 75237\, Sweden CATEGORIES:Event ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2023/03/Navet.jpg ORGANIZER;CN="SciLifeLab Navet":MAILTO:lokalbokning@scilifelab.uu.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20231004T090000 DTEND;TZID=Europe/Stockholm:20231005T170000 DTSTAMP:20260403T215349 CREATED:20230220T151823Z LAST-MODIFIED:20231002T130421Z UID:10000814-1696410000-1696525200@www.scilifelab.se SUMMARY:6th CryoNET Symposium in Stockholm DESCRIPTION:We are very much looking forward to seeing you all in Stockholm on Wednesday. We’ll have a full house of around 200 participants\, some 50 posters and a bunch of exciting speakers. It will be two intense and\, we hope\, enjoyable days! \n\n\n\nCryoNet is a Nordic network in Cryo-electron microscopy that aims to promote collaboration and knowledge sharing across national borders. A main goal is to help establish state-of-the-art cryo-electron microscopy as a strong pillar of Nordic life science research. \n\n\n\nThe core of the network is formed by the Cryo-EM facilities at the University of Copenhagen\, Aarhus University\, Stockholm University and Umeå University. The network also reaches out to Cryo-EM sites in Norway and Finland. \n\n\n\nThe 6th CryoNET Symposium will take place October 4-5 2023 at Stockholm University. Take the opportunity to hear from world leaders in the field and network with students and researchers!  \n\n\n\nParticipation in the symposium is free of charge and includes two days of lectures and a symposium dinner on October 4. We will start at 9:00 on Wednesday 4 October and finish 16:30 on Thursday 5 October. \n\n\n\nWe strongly encourage students and postdocs to submit an abstract about their research project. A number of abstracts will be selected for short talks and there will be a poster session for everyone during the symposium. \n\n\n\nOrganizersGunnar von Heijne\, Marta Carroni\, Arne Elofsson och Xiaodong ZouContact: Gunnar von Heine \n\n\n\n\n\n\n\nProgram & Abstracts\n\n\n\nCryonet_program_abstracts_finalDownload\n\n\n\n \n\n\n\nKeynote Speakers\n\n\n\n\nTamir Gonen\, UCLA\, USA\n\n\n\nEllen Zhong\, Princeton University\, USA\n\n\n\n\nConfirmed Speakers\n\n\n\n\nHenriette Autzen\, Univ. Copenhagen\, Denmark\n\n\n\nTristan Croll\, Altos Labs\, Cambridge\, UK\n\n\n\nFriedrich Förster\, Utrecht Bioinformatic Center\, The Netherlands\n\n\n\nEmil Kristoffersen\, Aarhus University\n\n\n\nKarin Lindkvist\, Lund University\, Sweden\n\n\n\nMisha Kudryashev\, Max Delbrück Center\, Berlin\, Germany\n\n\n\nShintaro Aibara\, AstraZeneca\, UK\n\n\n\nVille Paavilainen\, University of Helsinki\, Finland  \n\n\n\nAnastassis Perrakis\, NKI\, Amsterdam\, The Netherlands\n\n\n\nSuparna Sanyal\, Uppsala University\, Sweden \n\n\n\nLudovic Sauguet\, Institut Pasteur\, Paris\, France\n\n\n\nSuyang Zhang\, LMB-MRC\, Cambridge UK URL:https://www.scilifelab.se/event/6th-cryonet-symposium-in-stockholm/ LOCATION:Arrhenius Laboratory\, Stockholm University\, Svante Arrhenius väg 16C\, Stockholm CATEGORIES:Event ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2023/02/ClpCP_Carroni.png END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20231005T120000 DTEND;TZID=Europe/Stockholm:20231005T130000 DTSTAMP:20260403T215349 CREATED:20230711T113733Z LAST-MODIFIED:20230928T130033Z UID:10000929-1696507200-1696510800@www.scilifelab.se SUMMARY:Campus Solna Seminar Series: Daniela Almeida & May Britt Rian DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nThis week:\n\n\n\n\n\n\nDaniela Almeida\n\n\n\nMarc Friedländer – gamma 5 \n\n\n\nExploring bioactive peptides from Octopus vulgaris proteome after bacterial challenge \n\n\n\n\n\nMay Britt Rian\n\n\n\nJonathan Martin – alpha 1 \n\n\n\nNontarget Analysis of Organic Micropollutants in Swedish Waters \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page. URL:https://www.scilifelab.se/event/campus-solna-seminar-series-oct-5/ LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden CATEGORIES:Community ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/12/IMG_4110-scaled.jpg ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20231006T110000 DTEND;TZID=Europe/Stockholm:20231006T120000 DTSTAMP:20260403T215349 CREATED:20230816T080538Z LAST-MODIFIED:20231005T084643Z UID:10000954-1696590000-1696593600@www.scilifelab.se SUMMARY:From sequences to structures\, from structures to biology - On homo-oligomers and co-translational assembly DESCRIPTION:Speaker: Emmanuel Levy\, Weizmann \n\n\n\nHost: Arne Elofsson \n\n\n\nIn this talk\, I will provide an overview of our research\, emphasizing two recent pieces of work. The first goes from sequences to structures\, with the development of an atlas of homo-oligomerization spanning proteomes and lineages (https://www.biorxiv.org/content/10.1101/2023.06.09.544317v1). The second goes from structures to biology\, leveraging protein complexes’ structures to crack the code of co-translational assembly. URL:https://www.scilifelab.se/event/from-sequences-to-structures-from-structures-to-biology-on-homo-oligomers-and-co-translational-assembly/ LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden CATEGORIES:Event END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20231006T153000 DTEND;TZID=Europe/Stockholm:20231006T163000 DTSTAMP:20260403T215349 CREATED:20231002T160445Z LAST-MODIFIED:20231002T160654Z UID:10000981-1696606200-1696609800@www.scilifelab.se SUMMARY:Seminar "Stereo-Seq to study the brain gene expression across species" - Prof. Wei-Wu DESCRIPTION:Speaker: Prof. Wei-Wu\n\n\n\nTitle of Talk: Stereo-Seq to study the brain gene expression across species\n\n\n\nThe whole-brain single-cell spatial transcriptome atlas and cross-species comparisonThe brain is the most complex organ of humans with the highest heterogeneity of cell types. The composition and spatial location of different neuron subtypes\, as well as their precise connections\, are the basis for brain functions. Rapid advances in spatial transcriptomic technologies allow spatial mapping of gene expression as well as cellular subtypes at single-cell resolution of brain sections. We applied Stereo-Seq technology developed by BGI\, to construct the whole-brain cell atlas for macaques\, marmoset\, and mice\, with hundreds of coronal slices of spatial transcriptome across the whole brain per animal. Single-cell spatial transcriptome reveals cell-type organization in the macaque cortex and cross-species comparative analysis identified primate-specific cell types enriched in cortical layer 4\, whose marker genes are expressed in a region-dependent manner (Chen et al.\, Cell 2023). Whole-brain cell atlas provides the cellular and molecular basis for understanding the function\, evolution\, development\, aging\, and pathogenesis of the brain. \n\n\n\nHost: Vicent Pelechano & Claudia Kutter URL:https://www.scilifelab.se/event/seminar-stereo-seq-to-study-the-brain-gene-expression-across-species-prof-wei-wu/ LOCATION:Gamma 2 Lunchroom\, SciLifeLab\, Tomtebodavägen 23\, Solna\, Sweden CATEGORIES:Community ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20231009T090000 DTEND;TZID=Europe/Stockholm:20231013T170000 DTSTAMP:20260403T215349 CREATED:20230614T070145Z LAST-MODIFIED:20230615T091559Z UID:10000913-1696842000-1697216400@www.scilifelab.se SUMMARY:Python programming with applications to bioinformatics DESCRIPTION:National course open for PhD students\, postdocs\, researchers and other employees in need of fundamental Python skills within all Swedish universities \n\n\n\nResponsible teachers: Nina Norgren\, Dimitris Bampalikis\, Jeanette Tångrot \n\n\n\nContact information: edu.intro-python@nbis.se \n\n\n\nVenues: SciLifeLab Uppsala\, Trippelrummet\, BMC & Umeå University\, Naturvetarhuset\, room NAT.D.370 \n\n\n\n\n\n\n\n\n\nApplication\n\n\n\n\n\nCourse Website\n\n\n\n\n\n\n\n\n\n\n\n\n\nImportant dates\n\n\n\nApplication open: June 15 \n\n\n\nApplication deadline: September 8 \n\n\n\nConfirmation to accepted participants: September 15 \n\n\n\n\n\n\n\nCourse fee\n\n\n\n A course fee* of 3000 SEK will be invoiced to accepted participants. This includes lunches\, coffee and snacks\, and course dinner \n\n\n\n*Please note that NBIS cannot invoice individuals \n\n\n\n\n\n\n\nCourse description\n\n\n\nThis course provides a practical introduction to the writing of Python programs for the complete novice. Participants are led through the core aspects of Python illustrated by a series of example programs. Upon completion of the course\, attentive participants will be able to write simple Python programs from scratch and to customize more complex code to fit their needs. \n\n\n\nFormat \n\n\n\nThis course runs in parallel both on-site in Uppsala and in Umeå. Lectures will be streamed online from our Uppsala site to the Umeå site. Several teaching assistants will be present both in the Umeå and Uppsala classroom all week to help with exercises and questions. When registering you will be asked to which site you apply. \n\n\n\nThe course consists of a mix of presentations\, demonstrations\, and practical exercises (either in the lab with assistants or on your own). Prior to the course\, you can read a companion book “Programming Python”\, or “Learning Python”. Such a book will also prove useful for your programming tasks\, after the course is over. It is however not required\, and material will be presented in class. \n\n\n\n\n\n\n\nCourse content\n\n\n\n\nCore concepts about Python syntax: Data types\, blocks and indentation\, variable scoping\, iteration\, functions\, methods and arguments\n\n\n\nDifferent ways to control program flow using loops and conditional tests\n\n\n\nRegular expressions and pattern matching\n\n\n\nWriting functions and best-practice ways of making them usable\n\n\n\nReading from and writing to files\n\n\n\nCode packaging and Python libraries\n\n\n\nHow to work with biological data using external libraries.\n\n\n\n\n\n\n\n\nLearning outcomes\n\n\n\n\nDescribe and apply basic concepts in Python\, such as:LoopsIf/else statementsFunctions\n\nReading/writing to files\n\n\n\n\n\nBeing able to edit and run Python code\n\n\n\nWrite file-processing Python programs that produce output to the terminal and/or external files\n\n\n\nCreate stand-alone python programs to process biological data\n\n\n\nKnow how to develop your skills in Python after the course (including debugging)\n\n\n\n\n\n\n\n\nEntry requirements\n\n\n\nThe course is suitable for complete beginners and assumes no prior programming experience (beyond the ability to use a text editor). A very basic knowledge of UNIX would be an advantage\, such as navigating through folders and issuing commands at a shell prompt. We will not teach UNIX in detail: Other courses are available at SciLifeLab for it. Make sure your laptop has python installed for the practical exercises. \n\n\n\n\n\n\n\nSelection criteria\n\n\n\nDue to limited space the course can accommodate a maximum of 25 participants in Uppsala and 15 in Umeå. If we receive more applications\, participants will be selected based on several criteria. Selection criteria include correct entry requirements\, motivation to attend the course as well as gender and geographical balance. \n\n\n\nPlease note that NBIS training events do not provide any formal university credits. The training content is estimated to correspond to 1.5 hp credits\, however the estimated credits are just recommendations. If formal credits are crucial\, the student needs to confer with the home department before submitting a course application in order to establish whether the course is valid for formal credits or not. URL:https://www.scilifelab.se/event/python-programming-with-applications-to-bioinformatics-2/ CATEGORIES:Course ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20231010T080000 DTEND;TZID=Europe/Stockholm:20231010T170000 DTSTAMP:20260403T215349 CREATED:20230313T112350Z LAST-MODIFIED:20231009T112407Z UID:10000834-1696924800-1696957200@www.scilifelab.se SUMMARY:SciLifeLab Day Linköping DESCRIPTION:This event is a kick-off for the national SciLifeLab site in Linköping.\n\n\n\nLearn more about the services and capabilities that are offered from SciLifeLab\, both nationally and locally\, and how you can participate in the activities. \n\n\n\nWelcome to the SciLifeLab Day in Linköping. Here\, life-science researchers will have a unique opportunity to meet experts in research infrastructure\, participate in discussions on societal challenges and learn about what SciLifeLab have to offer both locally and nationally. \n\n\n\nExhibition\, poster session\, and mingle\n\n\n\nShow your research in a poster and take the opportunity to discuss how you can implement SciLifeLab’s advanced technologies with the infrastructure experts and visit the exhibitions or posters from the infrastructure units to learn what services they can offer you. \n\n\n\nRead more and find the program\n\n\n\nSciLifeLab etablerar nytt forskningssäte i Linköping\n\n\n\nProgram\n\n\n\nDetailed-program-SciLifeLab-Day-LinkopingDownload\n\n\n\n\n\n\n\nContact\n\n\n\n\n\nlinkoping@scilifelab.se \n\n\n\n\n\nJosefine SandströmLinköping UniversitySite Coordinator SciLifeLab Linköpingjosefine.sandstrom@liu.se\n\n\n\n\n\nSciLifeLab Days on the national sites\n\n\n\n\nGothenburg\, April 17\n\n\n\nUmeå\, September 11\n\n\n\nLund\, September 28\n\n\n\nLinköping\, October 10 URL:https://www.scilifelab.se/event/scilifelab-day-linkoping/ LOCATION:Campus US\, Linköping University\, Lasarettsgatan 20\, Linköping\, Sweden CATEGORIES:Event ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2023/08/1691583487328.jpg ORGANIZER;CN="SciLifeLab Link%C3%B6ping":MAILTO:linkoping@scilifelab.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20231011T120000 DTEND;TZID=Europe/Stockholm:20231011T130000 DTSTAMP:20260403T215349 CREATED:20231003T063653Z LAST-MODIFIED:20231003T063813Z UID:10000979-1697025600-1697029200@www.scilifelab.se SUMMARY:Metabolomics at speed – can direct analysis fingerprinting metabolomics be used for rapid sample screening? DESCRIPTION:On-line seminar by Alastair Ross\, Senior researcher/Metabolomics team lead at AgResearch\, New Zealand. \n\n\n\nArranged by Otto Savolainen\, Head of Unit\, Chalmers Mass Spectrometry Infrastructure (CMSI)\, Metabolomics Platform. \n\n\n\nRegistration URL:https://www.scilifelab.se/event/metabolomics-at-speed-can-direct-analysis-fingerprinting-metabolomics-be-used-for-rapid-sample-screening/ LOCATION:Online event via Zoom CATEGORIES:Event ORGANIZER;CN="SciLifeLab Gothenburg":MAILTO:gothenburg@scilifelab.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20231012T120000 DTEND;TZID=Europe/Stockholm:20231012T130000 DTSTAMP:20260403T215349 CREATED:20230711T114929Z LAST-MODIFIED:20230926T080223Z UID:10000930-1697112000-1697115600@www.scilifelab.se SUMMARY:Campus Solna Seminar Series: Annika Bendes & Alexander Petri DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nThis week:\n\n\n\n\n\n\nAnnika Bendes\n\n\n\nJochen Schwenk – alpha 2 \n\n\n\nProteome profiling of self-sampled dried blood spots to enhance population-based studies and precision medicine \n\n\n\n\n\nAlexander Petri\n\n\n\nKristoffer Sahlin – gamma 6 \n\n\n\nisONform: reference-free transcriptome reconstruction from Oxford Nanopore data \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page. URL:https://www.scilifelab.se/event/campus-solna-seminar-series-oct-12/ LOCATION:Milkyway SciLifeLab Solna\, Tomtebodavägen 23\, Solna CATEGORIES:Community ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/09/IMG_20221103_120135408_HDR-scaled.jpg ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20231017T080000 DTEND;TZID=Europe/Stockholm:20231019T170000 DTSTAMP:20260403T215349 CREATED:20230411T092159Z LAST-MODIFIED:20230411T092229Z UID:10000850-1697529600-1697734800@www.scilifelab.se SUMMARY:Cryo-EM sample preparation and data collection DESCRIPTION:The purpose of the course is to prepare and train Cryo-EM facility users in sample preparation methods\, introduce users to the image data acquisition workflow\, expand knowledge about cryo-EM methods among researchers and show that everyone can learn how to use cryo-EM for structure and cell biology. \n\n\n\nThe course is open for facility users or potential facility users\, such as PhD students\, postdocs\, and researchers within the life sciences who are curious and will profit from cryo-EM skills. Swedish and international course participants are welcome. To attend\, the course participants must have experience in basic electron microscopy and be familiar with structure or cell biology. \n\n\n\nThis course is supported by SciLifeLab\, CryoNET and Umeå University and organized by the SciLifeLab Cryo-EM facility\, both UmU and SU nodes together. \n\n\n\nRead more\n\n\n\nApplication deadline\n\n\n\nApplication should be submitted before September 29\, 2023 \n\n\n\nCourse organizers\n\n\n\nMichael Hall \n\n\n\nLocation\n\n\n\nUCEM and Chemical Biological Centre (KBC) BuildingUmeå University\, Linnaeus väg 6 \n\n\n\nTeachers and course instructors\n\n\n\n\n    Linda Sandblad\n\n\n\n    Michael Hall\n\n\n\n    Lars-Anders Carlson\n\n\n\n    Additional teachers t.b.a\n\n\n\n\nSocial program\n\n\n\nA social program depending on the current corona restriction will be communicated to the participants after acceptance. \n\n\n\nCourse content\n\n\n\nThis course will cover practical aspects of cryo-EM sample preparation and data acquisition. \n\n\n\nTopics covered\n\n\n\n\n    Basic theory of vitreous water\, how to handle a cryo sample and consequences\n\n\n\n    Plunge freezing methods\, tools and cryo-transfer\n\n\n\n    Sample and instrument requirements for single particle and tomography methods\n\n\n\n    Image data acquisition\, concept of low dose and the cryo-specific workflow\n\n\n\n    Introduction to automatic data acqui­sition software\, EPU\, Tomography\n\n\n\n    Introduction to cryo-EM image processing methods\n\n\n\n\nThe course consists of lectures\, cryo lab work\, demonstrations and practical exercises for all participants\, hands-on experiences of microscopy operation and discussions. A detailed schedule will be provided to accepted participant. \n\n\n\nCourse literature\n\n\n\nHandouts and material online. \n\n\n\nEntry requirements\n\n\n\nPriority will be given to researchers involved in project where the use of cryo-EM is needed\, which are to be briefly described upon application. \n\n\n\nThe course will be held at an advanced level\, assuming that participants have a master’s degree or equivalent in a technical life science discipline. It aims to be relevant for a broad research community\, also to participants not working in research environments using cryo-EM today. \n\n\n\nA maximum of 15 participants will be admitted. Selection criteria include correct entry requirements\, motivation to attend the course as well as gender balance. \n\n\n\nExamination\n\n\n\nParticipation in all parts of the course\, lectures\, lab\, microscopy demonstrations and evaluation are mandatory. SciLifeLab and Umeå University will provide successful participants with a course certificate and a recommendation for 1 ECTS URL:https://www.scilifelab.se/event/cryo-em-sample-preparation-and-data-collection-2/ LOCATION:KBC Building Umeå\, Linneaus Väg 6\, Umeå CATEGORIES:Course ORGANIZER;CN="SciLifeLab Ume%C3%A5":MAILTO:umea@scilifelab.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20231017T080000 DTEND;TZID=Europe/Stockholm:20231019T170000 DTSTAMP:20260403T215349 CREATED:20230810T125629Z LAST-MODIFIED:20231013T081404Z UID:10000946-1697529600-1697734800@www.scilifelab.se SUMMARY:Introduction to Data Management Practices - Cancelled DESCRIPTION:This national workshop in Data Management is a co-arranged event between Uppsala University and Chalmers University\, and provides an introduction for PhD students\, postdocs\, researchers\, and other employees within all Swedish universities. The workshop will introduce important aspects of research data management through a series of lectures\, demonstrations\, and hands-on computer exercises. The course is intended for researchers that want to take the first steps towards a more systematic and reproducible approach to analysing and managing research data. CANCELLED – next time (preliminary) in Stockholm\, April 2024 \n\n\n\nTopics covered will include: \n\n\n\n\nOpen Science and FAIR in practice\n\n\n\nOrganising data\, files and folders in research projects\n\n\n\nDescribing data with metadata\n\n\n\nPublishing data to public data repositories\n\n\n\nCleaning tabular data and metadata with OpenRefine\n\n\n\nWriting basic recipes for data analysis and visualisation with R\n\n\n\nVersioning data\, documents and scripts\n\n\n\nWriting Data Management Plans\n\n\n\n\n\n\n\n\nImportant dates\n\n\n\nApplication opens: now \n\n\n\nApplication closes: 2023-09-27 \n\n\n\nInformation to accepted students will be sent:  2023-09-29 \n\n\n\n\n\n\n\nContact\n\n\n\nedu.intro-dm@nbis.se \n\n\n\n\n\n\n\n\n\nApplication\n\n\n\n\n\nCourse website\n\n\n\n\n\n\n\n\n\nFormat\n\n\n\nThis workshop runs in parallel on-site in Uppsala\, and Göteborg. Lectures will be streamed online from our Uppsala site (mainly) to the Gothenburg classrooms\, and vice versa. Teachers and teaching assistants will be present at both locations all week to help with exercises and questions. When registering you will be asked to select a preferred site. \n\n\n\n\n\n\n\nVenues\n\n\n\nUppsala \n\n\n\nTrippelrummet (E10:1307-1309)\, SciLifeLab Navet\, Entrance C11\, Biomedical Centre (BMC) \n\n\n\nHusargatan 3\, 752 37 Uppsala \n\n\n\nGothenburg \n\n\n\nCLS Room Scrum 1\, University library\, 2nd floor \n\n\n\nHörsalsvägen 2 (entrance)\, 412 96 Gothenburg \n\n\n\n\n\n\n\nCourse fee\n\n\n\nThis on-site training event costs 2000 SEK invoiced to the participant’s organisation. If you accept a position and do not participate (no-show) you will still be invoiced 2000 SEK. Please note that NBIS cannot invoice individuals. \n\n\n\n\n\n\n\nEntry requirements\n\n\n\nNo previous programming experience is required but you are required to bring your own laptop with the required software pre-installed. Installation instructions will be provided before the course starts\, and the course organisers arrange a pre-course event approximately one week prior to first course day. \n\n\n\n\n\n\n\nCredits & Certificate\n\n\n\nPlease note that NBIS training events do not provide any formal university credits. Attendees with full attendance and completion of tasks will be issued a certificate of participation indicating topics covered and duration of the workshop. \n\n\n\nDue to limitations in space and capacity the course can accommodate a maximum of 25 participants per site.  If we receive more applications\, participants will be selected based on several criteria\, including correct entry information\, motivation to attend the course\, as well as gender and geographical balance. \n\n\n\nFor more detailed information about the workshop\, please visit the workshop website. URL:https://www.scilifelab.se/event/introduction-to-data-management-practices-5/ LOCATION:Uppsala University\, Uppsala and Chalmers University\, Gothenburg CATEGORIES:Course ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20231017T140000 DTEND;TZID=Europe/Stockholm:20231017T143000 DTSTAMP:20260403T215349 CREATED:20231009T094905Z LAST-MODIFIED:20231009T094906Z UID:10000990-1697551200-1697553000@www.scilifelab.se SUMMARY:CSI Seminar: ‘Burnout and Stress’ DESCRIPTION:We are excited to host a new Coaching in Science Initiative (CSI) Seminar titled: ‘Burnout and Stress’ \nThe number of people with a burnout diagnosis has sky-rocketed during the last decade and it is now considered to be one of our major national diseases. Stress is a natural and important reaction but when the response is kept active for too long it can have negative effects. In this seminar\, we will cover some basic aspects of stress and burnout\, and share personal experiences of going through a burnout process. Together we’ll discuss where we currently experience negative stress and what measures we can take to find and keep a sustainable balance in life. \nDate: 17/10/2023\nTime: 14:00 – 14:30\nZoom link: https://kth-se.zoom.us/j/68847309081\nOn-site location: Gamma 2 lunch room \nWe will begin with a ca 20 min talk\, held in Solna and over zoom. Then proceed with a reflection and discussion held only on-site. We encourage other sites to form watch parties\, by listening in together to the talk and then hold their own discussion afterwards. Hopefully seeding many local chapters of CSI.\nTo help facilitate discussion and reflection\, consider the follow starter questions: \nAwareness: where do we experience high risk for negative stress in our lives?\nAnalysis: how well do I currently handle negative stress?\nAlternative: how can we relate to burnout/stress\, in ourselves and others?\nAction: how will knowledge of burnout/stress change my decisions going forward? URL:https://www.scilifelab.se/event/csi-seminar-burnout-and-stress/ LOCATION:Hybrid event in Gamma 2 lunchroom and zoom\, Tomtebodavägen 23 B\, Solna\, 17165\, Sweden CATEGORIES:Community ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2023/10/CSI_logo_text_mail-2.png ORGANIZER;CN="Coaching in Science Initiative (CSI)":MAILTO:sami.saarenpaa@scilifelab.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20231019T100000 DTEND;TZID=Europe/Stockholm:20231019T110000 DTSTAMP:20260403T215349 CREATED:20230906T070555Z LAST-MODIFIED:20230907T142252Z UID:10000966-1697709600-1697713200@www.scilifelab.se SUMMARY:Using containers to simplify ML training on Berzelius and other supercomputers: beginner-friendly introduction DESCRIPTION:This webinar is part of the Tools for AI/ML research in life sciences event series arranged by the SciLifeLab Data Centre. \n\n\n\nTitle: Using containers to simplify ML training on Berzelius and other supercomputers: beginner-friendly introduction \n\n\n\nSpeakers: AI engineers from the SciLifeLab Data Centre and application experts from Berzelius (NSC\, LiU). \n\n\n\nWhere and when: October 19\, 2023 at 10:00-11:00 Stockholm time\, online. Registration is open till Oct 18 at 24.00. \n\n\n\nAbstract: A common approach to train machine learning models is to first create a prototype using a small dataset on a local machine to verify that it works and thereafter use a large scale compute infrastructure such as Berzelius for the full-scale training. One of the challenges with this approach however is incompatible systems in terms of differences in available software packages\, versions\, etc. An effective way to solve this issue is to use a container solution. Using a container environment allows a highly portable workflow and reproducible results between systems as diverse as a laptop\, Berzelius or EuroHPC resources such as LUMI for instance. During this beginner-friendly event\, we will introduce and demonstrate how to work with containers on Berzelius (Apptainer and Enroot) using an example from life sciences\, starting from raw data and finishing with a trained model. During the Q&A session\, the Berzelius life science support team will answer your questions. \n\n\n\nRegister to join the event\n\n\n\nMore about the event series: \n\n\n\nTools for AI/ML research in life sciences is an event series by the SciLifeLab Data Centre aimed at life science researchers who use machine learning methods in their work. The goal of the events in this series is to provide introductions to different tools for ML research but also to foster discussions around our practices and how they can be improved. The events takes place virtually (over Zoom) and are open to researchers in Sweden and beyond. Each event is scheduled for 60 minutes\, consisting of a talk and an extended discussion. Follow the page of the event series to learn about future seminars. \n\n\n\nFor questions about the events please contact the organizing team by emailing serve@scilifelab.se \n\n\n\n \n\n\n\nScientific lead: Prof. Ola Spjuth\, SciLifeLab Data Centre and Uppsala University \n\n\n\nContact information: serve@scilifelab.se URL:https://www.scilifelab.se/event/using-containers-berzelius/ LOCATION:Online event via Zoom CATEGORIES:Event END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20231019T120000 DTEND;TZID=Europe/Stockholm:20231019T130000 DTSTAMP:20260403T215349 CREATED:20230711T115033Z LAST-MODIFIED:20231004T092626Z UID:10000931-1697716800-1697720400@www.scilifelab.se SUMMARY:Campus Solna Seminar Series: María Bueno Alvez & Diana Mahdessian DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nThis week:\n\n\n\n\n\n\nMaría Bueno Alvez\n\n\n\nLinn Fagerberg – alpha 6 \n\n\n\nNext generation blood profiling of pancreatic cancer \n\n\n\n\n\nDiana Mahdessian\n\n\n\nEmma Lundberg – alpha 2 \n\n\n\nIdentification and Validation of Critical Mediators Driving Human Hepatic Stellate Cell (hHSC) activation via human Scar-Associated Macrophages (SAM) Using Spatial Proteomics \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page. URL:https://www.scilifelab.se/event/campus-solna-seminar-series-oct-19/ LOCATION:Gamma-6-Pascal\, SciLifeLab\, Tomtebodavägen 23\, Solna\, 17165\, Sweden CATEGORIES:Community ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/09/IMG_20221103_123412496_HDR2-scaled.jpg ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20231023T090000 DTEND;TZID=Europe/Stockholm:20231027T170000 DTSTAMP:20260403T215349 CREATED:20230811T112638Z LAST-MODIFIED:20230811T120144Z UID:10000948-1698051600-1698426000@www.scilifelab.se SUMMARY:R Foundations for Life Scientists DESCRIPTION:National course open for PhD students\, postdocs\, researchers and other employees in all Swedish universities\, in need of  programming in R. \n\n\n\n\n\n\n\nImportant dates & Information\n\n\n\nApplication opens: 2023-08-20 \n\n\n\nApplication closes: 2023-09-20 \n\n\n\nConfirmation to accepted students: 2023-09-27 \n\n\n\nCourse Leader and teachers: Nima Rafati (CL)\, Prasoon Argawal (CL)\, Marcin Kierczak (CT)\, Sebastian DiLorenzo (CT) \n\n\n\nIn case you miss information on any of the above dates\, please contact us via edu.r@nbis.se \n\n\n\n\n\n\n\n\n\nApplication\n\n\n\n\n\nCourse website\n\n\n\n\n\n\n\n\n\nCourse fee\n\n\n\nA course fee* of 2000 SEK will be invoiced to accepted participants. The fee includes lunches\, coffee and snacks. \n\n\n\n*Please note that NBIS cannot invoice individuals \n\n\n\n\n\n\n\nCourse content\n\n\n\nThe course covers fundamental concepts of programming and software design focusing on programming in R. We will go through various aspects of R scripting emphasizing the parts useful for life scientists. After introductory lectures on good programming practices\, basic software design theory and a brief overview of R\, we will delve into programming. \n\n\n\nTopics covered will include: \n\n\n\n\nVariables and Operators\n\n\n\nMatrices\, lists\, and dataframes\n\n\n\nData manipulation\n\n\n\nVisualization\n\n\n\nR packages\n\n\n\nBioconductor\n\n\n\n\n\n\n\n\nLearning Outcomes\n\n\n\nUpon completion of this course\, you will be able to: \n\n\n\n\nDescribe different data structures commonly used in R.\n\n\n\nWork with different data types.\n\n\n\nImport and export data from and to R environment. \n\n\n\nManipulate data.\n\n\n\nWork with dataframes and lists.\n\n\n\nVisualize the data.\n\n\n\nExplain about R packages and steps to create them.\n\n\n\nInstall R packages from Bioconductor. \n\n\n\n\n\n\n\n\nEntry requirements\n\n\n\nThe following is a list of skills required for being able to follow the course and complete the exercises: \n\n\n\n\nGood general computer literacy\n\n\n\nBasic knowledge in mathematics and statistics\n\n\n\n\nDue to limited space the course can accommodate a maximum of 20 participants. If we receive more applications\, participants will be selected based on selection criteria\, including (but not limited to) correct entry requirements\, motivation to attend the course\, as well as gender and geographical balance. URL:https://www.scilifelab.se/event/r-foundations-for-life-scientists/ LOCATION:Navet\, SciLifeLab Uppsala\, SciLifeLab Uppsala\, BMC C11\, Husargatan 3\, Uppsala\, 75237\, Sweden CATEGORIES:Course ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20231023T151500 DTEND;TZID=Europe/Stockholm:20231023T161500 DTSTAMP:20260403T215349 CREATED:20231006T134540Z LAST-MODIFIED:20231006T140206Z UID:10000993-1698074100-1698077700@www.scilifelab.se SUMMARY:[The Svedberg seminar] - Peptide nucleic acid (PNA)-mediated pretargeting for radionuclide therapy DESCRIPTION:Amelie Karlström \n\n\n\nProfessor of Molecular BiotechnologyDepartment of Protein Science\, KTH \n\n\n\n \n\n\n\n\n\n\n\nBio\n\n\n\nAmelie Eriksson Karlström is Professor of Molecular Biotechnology at the Department of Protein Science\, KTH\, where her research group is focused on protein engineering\, affinity technologies and bioconjugation chemistry for diagnostic and therapeutic applications. Amelie Eriksson Karlström has a background in solid phase peptide synthesis methodology from PhD studies at the Department of Neurochemistry and Neurotoxicology at Stockholm University. She did postdoctoral studies at the Scripps Research Institute\, La Jolla\, CA\, working on catalytic antibodies and display technologies with Profs. Richard A. Lerner and Carlos Barbas\, III\, before starting her independent research at KTH \n\n\n\n \n\n\n\nPeptide nucleic acid (PNA)-mediated pretargeting for radionuclide therapy\n\n\n\nTargeted radionuclide therapy utilizes tumor-specific radiolabeled molecules to deliver cytotoxic radiation to tumor cells. To avoid unwanted exposure of non-tumor organs\, a pretargeting strategy can be used\, where the tumor-targeting step is uncoupled from the delivery of the toxic radionuclide. The primary agent is administered first and the secondary\, radiolabeled agent is administered after the primary agent has accumulated in the tumor and cleared from non-tumor tissue. We have developed and evaluated a system for pretargeting based on the high selectivity and high affinity of peptide nucleic acid (PNA) hybridization. We have demonstrated that the PNA-based pretargeting system gives high tumor-to-normal tissue contrast in vivo both using affibody molecules and monoclonal antibodies as the tumor-targeting agents.  \n\n\n\nIn this seminar\, the molecular design and technological aspects of the PNA-based pretargeting system will be discussed. Results from preclinical evaluation of the PNA-based pretargeting strategy will be presented.  \n\n\n\n \n\n\n\n\n\n\n\n\n\n\n\nHost: Abhimanyu Thakur\,UU URL:https://www.scilifelab.se/event/the-svedberg-seminar-amelie-karlstrom/ LOCATION:BMC Room C8:301\, Husargatan 3\, Uppsala\, Sweden CATEGORIES:Event ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/02/Picture1-The-Svedberg.png ORGANIZER;CN="The Svedberg Seminar Series":MAILTO:thesvedberg@scilifelab.uu.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20231024T090000 DTEND;TZID=Europe/Stockholm:20231024T190000 DTSTAMP:20260403T215349 CREATED:20231018T073920Z LAST-MODIFIED:20231024T071000Z UID:10001002-1698138000-1698174000@www.scilifelab.se SUMMARY:SciLifeLab Campus Solna Science Talks DESCRIPTION:We would hereby like to warmly welcome you to take part in this year’s Campus Solna Science Talks symposium on October 24th – a meeting for everyone in the community to learn more about ongoing research and activities at SciLifeLab’s Campus Solna\, which aims to bring the community together\, inspire exchange and new collaborations. \n\n\n\nResearch presentations will be given by group leaders and junior researchers (selected with consideration for balance in topics\, presenters’ career stages\, and affiliations) as part of a plenary session between 9:00 and 16:00 (including lunch)\, and the event will conclude with a poster session\, mingle and food in Campus Solna’s meeting place Delta. \n\n\n\nWe invite all Campus Solna research groups to be represented with at least 1 poster (and maximum 3). Furthermore\, we want to encourage all infrastructure units and committees (The Diversity\, Equity and Inclusion-committee\, the Public Engagement-committee\, the CSI and the PhD- & Postdoc-council) to partake with posters! \n\n\n\nList of Posters (titles & numbering) \n\n\n\n\n\n\n\n \n\n\n\n\n\n\n\nProgram\n08:30Arrival\, registration and coffeeJacob Berzelius hall\, Karolinska Institutet09:00Welcome and opening of symposiumScientific Committee & Per LjungdahlSession I. Moderator Yerma Pareja09:15Mapping B and T cell receptors using spatial transcriptomicsCamilla Engblom09:30Use the Flow\, Leukocyte: ion and water fluxes are required for T cell migrationLeon de Boer09:45B cell repertoire analysis of SARS-CoV-2-infected individualsGunilla Karlsson Hedestam10:15Coffee BreakSession II. Moderator Marcel Tarbier10:45agoTRIBE detects microRNA-target interactions transcriptome-wide in single cellsVaishnovi Sekar11:00Single cell-resolution in situ sequencing elucidates spatial dynamics of multiple sclerosis lesion and disease evolutionChristoffer Mattsson Langseth11:15Beyond the host’s spatial transcriptomeStefania Giacomello11.30Machine learning of immune escape dynamics from single cell and spatial tumor transcriptomicsJakob Rosenbauer11.45LunchSession III. Moderator Ute Hoffmann13:00Female sex hormones and the human microbiomeLuisa Hugherth13:15Environmental genomics for broadscale studies on aquatic microbial diversity and evolutionKrzysztof Jurdzinski13:30Interaction proteomics to explore protein regulation in photosynthetic organismsAnna Karlsson13:45Developmental Gene TranscriptionMattias Mannervik14:15Coffee BreakSession IV. Moderator Erdinc Sezgin14:45Modelling Glut1 Deficiency Syndrome (Glut1DS) for therapeutics and drug discoveryRekha Tripathi15:00Multiplexed high-content screening of drug and immune sensitivity in microwellsValentina Carannante15:15Dynamics at the molecular scale from cells to STARSSIlaria Testa15:45Concluding RemarksPer Ljungdahl16:00Poster SessionSciLifeLab DeltaMingle\, pub and light food\n\n\n\n \n\n\n\n \n\n\n\n\n\n\n\n\nPoster Session\nEach group/unit is welcome to bring up to 3 posters to the grand Poster Session that will follow the talks. Submit the poster titles in the registration form. Please coordinate within your research group/unit beforehand who should bring a poster. Poster session will take place in the Delta building in SciLifeLab Solna. \n\n\n\nPoster dimensions: 70×100 \n\n\n\n \n\n\n\n\n\n\n\n\nScientific Committee\nThis event has been made possible through the hard work of the Scientific committee. \n\n\n\nScientific Committee \n\n\n\n\nErdinc Sezgin\n\n\n\nMarcel Tarbier\n\n\n\nUte Hoffman\n\n\n\nStefania Giacomello\n\n\n\nKristoffer Sahlin\n\n\n\nPer Ljungdahl\n\n\n\n\nOperations Office representatives \n\n\n\n\nIsolde Palombo\n\n\n\nDisa Larsson Hammarlöf URL:https://www.scilifelab.se/event/scilifelab-campus-solna-science-talks-2/ LOCATION:Jacob Berzelius salen\, KI\, Berzelius väg 3\, Solna\, 171 65\, Sweden CATEGORIES:Event ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2023/07/181A6885-Danish-Saroee_frikopt-scaled.jpg ORGANIZER;CN="SciLifeLab Event":MAILTO:events@scilifelab.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20231025T080000 DTEND;TZID=Europe/Stockholm:20231027T130000 DTSTAMP:20260403T215349 CREATED:20230814T082817Z LAST-MODIFIED:20231019T092918Z UID:10000950-1698220800-1698411600@www.scilifelab.se SUMMARY:Subtomogram averaging workshop for cryo electron tomography DESCRIPTION:Cryoelectron tomography is anemerging field in structural biology. We are happy to announce that we are hosting a Subtomogram averaging workshop for cryo electron tomography\, taking place on 25-27 October 2023 at Stockholm University.  \n\n\n\nThe aim of the course is to provide training in Subtomogram averagingusing e.g. Dynamo and Relion4 including the latest developments of the field. \n\n\n\nRegistration is now closed \n\n\n\nThe workshop provides hands-on training in all practical aspects of tomography and sub-tomogram averaging using the Dynamo software\, encompassing all stages of the pipeline: alignment and reconstruction of tilt series\, tomogram visualization and archiving\, particle selection and extraction\, and subtomogram alignment\, averaging\, refinement and classification. No previous experience is required. Computing infrastructure will be provided in place\, and we welcome participants to bring their own data sets to work on them during this two-day course. \n\n\n\n\n\n\n\nParticipants will be selected on the basis of applications that describe their current research projects and plans. Priority will be given to participants that are currently processing their own cryo-ET data and are users of the SciLifeLab cryo-EM facilities. \n\n\n\nDeadline for application:  15 September 2023  \n\n\n\nNotification: Applicants will be notified of the outcome of their application by 20 September 2023 \n\n\n\nCourse fee payment deadline: 30 September 2023 \n\n\n\nThe registration fee: 1000 SEK and includes \n\n\n\n\nAttendance in the course 25-27 October 2023\n\n\n\nLunches\, coffee and refreshments on the course dates\n\n\n\nCourse materials\n\n\n\nCertificate of attendance\n\n\n\nCourse dinner on first night of the course\n\n\n\n\nPlease note\, the registration fee does not cover hotel\, travel expenses\, breakfasts\, and dinners (expect the course dinner second night) \n\n\n\nCourse Content\n\n\n\nThe course content can be found here \n\n\n\nRead more\n\n\n\nAs a general guideline\, we will cover: \n\n\n\n\nAlignment and reconstruction of tilt series.\n\n\n\nManual and automated particle picking in different geometries (filaments\, membranes\, isolated particles…).\n\n\n\nArchiving and cataloguing of tilt series\, tomograms and annotations.\n\n\n\nCreation of subtomogram averaging projects.\n\n\n\nAdvanced tools in subtomogram averaging.\n\n\n\nClassification methods.\n\n\n\nCreation of 3d scenes.\n\n\n\nScripting in Dynamo: gentle introduction to programming.\n\n\n\n\nComputing facilities\n\n\n\nComputer room at KÖL\, Stockholm University \n\n\n\nVenues \n\n\n\n25-26/10-23 \n\n\n\nDepartment of Biochemistry and BiophysicsComputer room at KÖL\, K343Stockholm University\, Svante Arrhenius väg 16CStockholm \n\n\n\n27/10-23 \n\n\n\nSciLifeLab Seminar room in building gamma 2\, Air&Fire Tomtebodavägen 23ASolna \n\n\n\n \n\n\n\nProgram\n\n\n\nProgram_231018_1Download URL:https://www.scilifelab.se/event/subtomogram-averaging-workshop-for-cryo-electron-tomography/ LOCATION:Arrhenius Laboratory\, Stockholm University\, Svante Arrhenius väg 16C\, Stockholm CATEGORIES:Course ORGANIZER;CN="Cryo-EM Infrastructure Unit":MAILTO:cryoem_stockholm_lab@scilifelab.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20231026T120000 DTEND;TZID=Europe/Stockholm:20231026T130000 DTSTAMP:20260403T215349 CREATED:20230711T115158Z LAST-MODIFIED:20231010T083550Z UID:10000932-1698321600-1698325200@www.scilifelab.se SUMMARY:Campus Solna Seminar Series: Stavros Azinas & Marco Grillo DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nThis week:\n\n\n\n\n\n\nStavros Azinas\n\n\n\nMarta Carroni – gamma 3 \n\n\n\nConformational insights of bacterial dissagregase CLPG \n\n\n\n\n\nMarco Grillo\n\n\n\nMats Nilsson – gamma 4 \n\n\n\nOpen source tools for high-throughput spatially resolved transcriptomics \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page. URL:https://www.scilifelab.se/event/campus-solna-seminar-series-oct-26/ LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden CATEGORIES:Community ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/12/IMG_4110-scaled.jpg ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20231031T130000 DTEND;TZID=Europe/Stockholm:20231031T160000 DTSTAMP:20260403T215349 CREATED:20231010T074915Z LAST-MODIFIED:20231020T074900Z UID:10000996-1698757200-1698768000@www.scilifelab.se SUMMARY:I Forskningens Framkant - Fortbildning för Gymnasielärare DESCRIPTION:Välkommen till en fortbildning där du får uppleva delar av det nationella forskningscentret för molekylära biovetenskaper i Stockholm. \n\n\n\nDenna eftermiddag får du möta fyra forskare som berättar om sin forskning och så gör vi en rundvandring på SciLifelab. Fortbildningen avslutas med mingel med tilltugg. \n\n\n\nProgram12:30-13:00 Kaffe13:00-14:30 Föreläsningar – fyra forskare från SciLifeLab14:30-15:00 Visning av labb15:00-16:00 Mingel med tilltugg \n\n\n\nPlats: SciLifeLab\, Tomtebodavägen 23\, SolnaKarta: Google Maps \n\n\n\nVälkommen med din anmälan! \n\n\n\nRegistrering\n\n\n\nFrom Genes to Proteins: The Power of the Human Protein AtlasFredrik Edfors\, SciLifeLab/KTHFramtidens målsökande läkemedelStefan Ståhl\, SciLifeLab/KTHKlinisk GenomikAnna Lyander\, SciLifeLab/Karolinska InstitutetMikrobernas samhällenAnders Andersson\, SciLifeLab/KTH14:00-15:00 Rundvandring i lokalerna15:00-16:00 Mingel med tilltugg \n\n\n\n \n\n\n\nFrom Genes to Proteins: The Power of the Human Protein AtlasFredrik Edfors\, SciLifeLab/KTH \n\n\n\nHuman Protein Atlas (HPA) som finansieras av Knut och Alice Wallenbergs stiftelse är ett svenskt projekt som är baserat på SciLifeLab\, en nationell samarbetsplattform för molekylär biologi som drivs av KTH\, Karolinska Institutet\, Stockholms universitet och Uppsala universitet. Människan har cirka 20 000 gener som kodar för proteiner\, och HPA hjälper till att identifiera olika kombinationer av proteiner som är avgörande för mänsklig biologi. HPA strävar efter att systematiskt kartlägga det mänskliga genomet på proteinnivå och på www.proteinatlas.org presenteras dessa nivåer inom flera olika fokusområden. Dessa inkluderar bland annat inkluderar proteinuttryck i vävnader\, hjärna\, cell-linjer eller nivåer blod och hur dessa skiljer sig mellan olika sjukdomstillstånd. Förutom att stödja andra forskare är atlasen också en värdefull utbildningsresurs för ämnen som rör den mänskliga kroppen\, cellbiologi och molekylärbiologi.  \n\n\n\nFramtidens målsökande läkemedelStefan Ståhl\, SciLifeLab/KTH \n\n\n\nSmå bindarproteiner kan med hjälp av riktad evolution fås att binda till sjukdomsrelaterade proteiner\, så kallade biomarkörer\, som kan utnyttjas som måltavlor för nya typer av proteinläkemedel. Som exempel kan cancertumörceller målsökas på detta sätt. Dessa målsökande bindarproteinerna kan “beväpnas”\, t.ex. med cellgifter eller lämpliga radioisotoper som dödar tumörcellerna\, med minimal påverkan på frisk vävnad. \n\n\n\nKlinisk GenomikAnna Lyander\, SciLifeLab/Karolinska Institutet \n\n\n\nClinical Genomics är en infrastrukturplattform vid Scilifelab. Plattformen arbetar med avancerade genomikmetoder\, olika typer av sekvenseringsteknologier och dataanalysverktyg\, för att stötta forskning och sjukvård. Clinical Genomics erbjuder en helhetslösning inom next generation sequencing för translationella forskningsprojekt och kliniska studier\, och bidrar till att optimera tekniker så att de kan användas inom precisionsmedicin. Plattformen arbetar också inom ramen för Genomic Medicine Sweden för att harmonisera precisionsmedicin i Sverige vilket banar väg för bättre diagnostik\, vård och behandling i hela landet. \n\n\n\nMikrobernas samhällenAnders Andersson\, SciLifeLab/KTH URL:https://www.scilifelab.se/event/i-forskningens-framkant-fortbildning-for-gymnasielarare/ LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden CATEGORIES:Event ORGANIZER;CN="SciLifeLab Event":MAILTO:events@scilifelab.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20231102T120000 DTEND;TZID=Europe/Stockholm:20231102T130000 DTSTAMP:20260403T215349 CREATED:20230711T115341Z LAST-MODIFIED:20231012T084425Z UID:10000933-1698926400-1698930000@www.scilifelab.se SUMMARY:Campus Solna Seminar Series: Emilie Flaberg & Kiana Hosseinpour Moghaddam DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nThis week:\n\n\n\n\n\n\nEmilie Flaberg\n\n\n\nPäivi Östling – alpha 4 \n\n\n\n \n\n\n\n\n\nKiana Hosseinpour Moghaddam\n\n\n\nOla Larsson – gamma 5 \n\n\n\n \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page. URL:https://www.scilifelab.se/event/campus-solna-seminar-series-nov-2/ LOCATION:Milkyway SciLifeLab Solna\, Tomtebodavägen 23\, Solna CATEGORIES:Community ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/09/IMG_20221103_124630107_HDR-scaled.jpg ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20231106T090000 DTEND;TZID=Europe/Stockholm:20231110T170000 DTSTAMP:20260403T215349 CREATED:20230818T135627Z LAST-MODIFIED:20230915T130032Z UID:10000955-1699261200-1699635600@www.scilifelab.se SUMMARY:DDLS Population genomics in practice DESCRIPTION:National course open for PhD students\, postdocs\, researchers and other employees in all Swedish universities\, in need of hands-on and practical skills for the analyses of population genomics data. \n\n\n\n\n\n\n\nImportant dates and information\n\n\n\nApplication opens: 2023-08-17 \n\n\n\nApplication closes: 2023-09-30 \n\n\n\nConfirmation to accepted students: 2023-10-10 \n\n\n\nCourse Leader and teachers: Per Unneberg (CL)\, Nikolay Oskolkov\, Jason Hill\, André Soares \n\n\n\nIn case you miss information on any of the above dates\, please contact: edu.population-genomics-in-practice@nbis.se \n\n\n\n\n\n\n\nCourse fee\n\n\n\nA course fee* of 3000 SEK will be invoiced to accepted participants. The fee includes lunches\, coffee and snacks. \n\n\n\n*Please note that NBIS cannot invoice individuals \n\n\n\n\n\n\n\n\n\nApplication\n\n\n\n\n\nCourse Website\n\n\n\n\n\n\n\n\n\nCourse content\n\n\n\nThe aim of this workshop is to provide an introduction to commonly used methods in population genomics. As the focus of the course is on hands-on work\, the topics have been designed to cover the fundamental analyses that are common in many population genomics studies. The course consists of lectures and exercises\, with a focus on the practical aspects of analyses. Whereas lectures introduce some background theory\, their primary aim is to set the stage for accompanying exercises. \n\n\n\nTopics covered will include: \n\n\n\n\nFoundations of population genetics\n\n\n\nIntroduction to simulation and the coalescent\n\n\n\nBasics of variant calling\n\n\n\nVariant filtering and sequence masks\n\n\n\nCharacterization and interpretation of DNA sequence variation\n\n\n\nCalculation and interpretation of summary statistics from variation data\n\n\n\nInvestigating population structure with admixture modelling and principal component analyses\n\n\n\nDemographic modelling using sequentially Markovian coalescent models and linkage disequilibrium\n\n\n\nSelection scans\n\n\n\n\n\n\n\n\nLearning Outcomes\n\n\n\nUpon completion of this course\, you will be able to: \n\n\n\n\ndescribe the different forces of evolution and how they influence genetic variation\n\n\n\nunderstand and interpret genealogical trees and how they relate to genetic variation data\n\n\n\ndescribe the basics of the coalescent\n\n\n\nperform simple coalescent simulations with msprime\n\n\n\nrun simple SLiM forward simulation models\n\n\n\ndescribe and run the steps of a variant calling pipeline\, including quality control of raw reads\, read mapping\, and variant calling\n\n\n\nknow how and when to filter raw variant calls using manual coverage filters\n\n\n\ndescribe and calculate nucleotide diversity from variation data\n\n\n\nanalyse population structure with admixture modelling and dimensionality reduction methods\n\n\n\nperform demographic modelling with sequential Markovian coalescent models\n\n\n\ndescribe methods that identify regions undergoing adaptation and selection\n\n\n\nrun selection scans\, score identified regions and interpret findings in the context of genome annotations\n\n\n\n\n\n\n\n\n\n\nEntry Requirements\n\n\n\nThe following is a list of skills required for being able to follow the course and complete the exercises: \n\n\n\n\nBasic knowledge in R or Python\n\n\n\nBasic knowledge of variant calling\, or the equivalent of NBIS course “Introduction to Bioinformatics using NGS data”\n\n\n\nBasic knowledge of population genetics\n\n\n\nBasic understanding of frequentist statistics\n\n\n\nA computer\n\n\n\n\nDesirable\, but not essential\, skills increasing the output of the course\, include: \n\n\n\n\nExperience with analysis of NGS and other omic data\n\n\n\n\nDue to limited space the course can accommodate a maximum of 25 participants. If we receive more applications\, participants will be selected based on selection criteria\, including (but not limited to) correct entry requirements\, motivation to attend the course\, as well as gender and geographical balance. URL:https://www.scilifelab.se/event/population-genomics-in-practice/ LOCATION:Navet\, SciLifeLab Uppsala\, SciLifeLab Uppsala\, BMC C11\, Husargatan 3\, Uppsala\, 75237\, Sweden CATEGORIES:Course ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20231106T100000 DTEND;TZID=Europe/Stockholm:20231107T170000 DTSTAMP:20260403T215349 CREATED:20230509T092633Z LAST-MODIFIED:20231020T075809Z UID:10000882-1699264800-1699376400@www.scilifelab.se SUMMARY:21st Swedish Bioinformatics Workshop 2023 in Stockholm DESCRIPTION:We’re pleased to invite you to the 21st Swedish Bioinformatics Workshop (SBW) that will take place in Stockholm on November 6th – 7th (Mo-Tu). SBW is an annual event that is hosted by different universities across Sweden. This year\, the event will take place at Karolinska Sjukhuset Solna at the Sune Bergström’s Aula. \n\n\n\nAs is tradition\, SBW will be a chance for PhD students and postdocs as well as all researchers working with bioinformatics or computational biology to present their work\, discuss the latest developments in the field\, and improve their bioinformatic skills through different workshops. In addition\, the program includes lectures from invited speakers\, participant presentations\, and poster sessions. \n\n\n\nThis year SBW is part of the Nordic Computational Biology Week. It features SBW (6th-7th of Nov.\, Mo-Tu)\, the Danish Bioinformatics Symposium (8th-9th of Nov.\, We-Th) and the Finish Symposium on Computational Biology (10th of Nov.\, Fr). More information can be found under: bit.ly/ncb-week-2023 \n\n\n\nMore information regarding SBW will be updated on the website: sbw2023.eu. On-site registration is closed\, but you can still sign up for free for virtual attendance. There you can also sign up for the other events that are part of the Nordic Computational Biology Week. If you have any questions\, feel free to reach out to sbw2023@scilifelab.se. \n\n\n\nWelcome to the Swedish Bioinformatics Workshop 2023! URL:https://www.scilifelab.se/event/swedish-bioinformatics-workshop-2023/ LOCATION:Sune Bergström Aula\, BioClinicum\, New Karolinska University Hospital\, Solnavägen 30\, Stockholm\, 17164\, Sweden CATEGORIES:Event ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2023/05/SBW2023_logo_green_tb1-1024x327-1.png ORGANIZER;CN="Swedish Bioinformatics Workshop 2023":MAILTO:sbw2023@scilifelab.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20231107T130000 DTEND;TZID=Europe/Stockholm:20231107T140000 DTSTAMP:20260403T215349 CREATED:20231030T125153Z LAST-MODIFIED:20231030T132952Z UID:10001009-1699362000-1699365600@www.scilifelab.se SUMMARY:Discovery of SARS-CoV-2 Main Protease inhibitors at the DDD platform DESCRIPTION:Pandemic preparedness and the generation of SARS-CoV-2 inhibitors – A new exit from SciLifeLab Drug Discovery and Development platform \n\n\n\nDDD Exit Event 2023-11-07\, zoomcast 13.00 \n\n\n\n \n\n\n\nPresenters\n\n\n\nDr. Ulf Ribacke. Dept. of Microbiology\, Tumor and Cell Biology\, Karolinska InstitutetTel: +46 70 497 5196\, Email: ulf.ribacke@ki.se \n\n\n\nProf. Jens Carlsson\, Dept. of Cell and Molecular Biology\, Uppsala UniversityTel: +46 72 227 7976\, Email: jens.carlsson@icm.uu.se \n\n\n\nAbstract\n\n\n\nSciLifeLab has been commissioned by the government to build laboratory capacity to assist in future pandemics through research and competence and technology development. Hear more about the SciLifeLab Pandemic Laboratory Preparedness program from Ulf Ribacke\, (SciLifeLab and Karolinska Institutet) and groundbreaking research performed by researchers at Uppsala University that led to discovery of potent main protease SARS-CoV-2 inhibitors. \n\n\n\nJens Carlsson\, Helena Danielson\, Anja Sandström and Lindon Moodie have recently signed an agreement for international partnering of a project focusing on development of drugs for treatment of COVID-19 (DP_JC_188). \n\n\n\nThe project was funded by the National COVID-19 Research Program initiated by the Knut and Alice Wallenberg Foundation. Hit compounds identified by virtual screening were published in 2022 by Luttens et al. (https://doi.org/10.1021/jacs.1c08402). Hit-to-lead generation was then performed together with the Drug Discovery and Development Platform in the DP_JC_188 project. Lead optimization and preclinical development of assets are now supported by an international pharmaceutical company. \n\n\n\nShort speakers biography:\n\n\n\nUlf Ribacke: Ulf is scientific co-director of the SciLifeLab Pandemic Laboratory Preparedness program and heads two research labs located at Karolinska Institutet and Uppsala University\, both dedicated to resolve how malaria parasites adapt to evade cellular stress with the ultimate goal to identify targets for new interventions. \n\n\n\nJens Carlsson: Jens is a Professor of Computational Biochemistry at Uppsala University\, where his group uses computational models to understand protein function at the molecular level and develops strategies for drug discovery.For more information\, visit http://www.carlssonlab.org/. \n\n\n\nUlf RibackeKarolinska InstitutetScientific Lead – Pandemic Laboratory Preparedness at SciLifeLabulf.ribacke@ki.se\n\n\n\nJens CarlssonUppsala Universityjens.carlsson@icm.uu.se URL:https://www.scilifelab.se/event/discovery-of-sars-cov2-mpro-inhibitors-at-the-ddd-platform/ CATEGORIES:Event END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20231109T100000 DTEND;TZID=Europe/Stockholm:20231109T153000 DTSTAMP:20260403T215349 CREATED:20231009T132350Z LAST-MODIFIED:20231026T114542Z UID:10000995-1699524000-1699543800@www.scilifelab.se SUMMARY:The Spatial Biology Tour 2023 - the Spatial Proteomics Unit and Lunaphore DESCRIPTION:The Spatial Proteomics Unit at SciLifeLab hosts the Lunaphore Spatial Biology Tour at SciLifeLab Solna. \n\n\n\nTake the opportunity to learn more about the COMET platform for automated sequential immunofluorescence and how you can work with the Spatial Proteomics Unit to generate highly multiplexed imaging data for your research project. \n\n\n\nThe Spatial Proteomics Unit was an early beta tester of the COMET platform in 2021 and since 2022 offer the COMET platform as a service in their unit. You will also get the chance to see the instrument live in the Spatial Proteomics unit. \n\n\n\nRead more and register here\n\n\n\n\n\n\n\nMultiplexed image of a colon FFPE sample generated on the COMET platform\n\n\n\n \n\n\n\nProgram\n\n\n\n10:00Welcome and registration10.15Spatial cell profiling with hyperplex immunofluorescenceAngelo Da Rosa11.00COMET – opportunities in the Spatial Proteomics FacilityCharlotte Stadler11.45RNAscope™: Single-molecule RNA in situ hybridization. ANY Gene. ANY Species. ANY tissue.Joan Raouf12.15Lunch and networking13.00COMET™ on-site instrument demonstration14.15Refreshment and networking URL:https://www.scilifelab.se/event/the-spatial-biology-tour-2023-the-spatial-proteomics-unit-and-lunaphore/ LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden CATEGORIES:Event ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2023/10/COMET-colon.png ORGANIZER;CN="Spatial Proteomics Unit":MAILTO:spatial.proteomics@scilifelab.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20231109T120000 DTEND;TZID=Europe/Stockholm:20231109T130000 DTSTAMP:20260403T215349 CREATED:20230711T115453Z LAST-MODIFIED:20231107T105533Z UID:10000934-1699531200-1699534800@www.scilifelab.se SUMMARY:Campus Solna Seminar Series: Adelina Rabenius DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nThis week:\n\n\n\n\n\n\nAdelina Rabenius\n\n\n\nAnniina Vihervaara – alpha 3 \n\n\n\nTimers in genes: Introns define the order of heat-induced chaperone production \n\n\n\n\n\n\n\n\n\n \n\n\n\n \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page. URL:https://www.scilifelab.se/event/campus-solna-seminar-series-nov-9/ LOCATION:Milkyway SciLifeLab Solna\, Tomtebodavägen 23\, Solna CATEGORIES:Community ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/09/IMG_20221103_120135408_HDR-scaled.jpg ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20231113T090000 DTEND;TZID=Europe/Stockholm:20231117T170000 DTSTAMP:20260403T215349 CREATED:20230607T141335Z LAST-MODIFIED:20230607T141419Z UID:10000906-1699866000-1700240400@www.scilifelab.se SUMMARY:Introduction to bioinformatics using NGS data DESCRIPTION:National workshop for PhD students\, postdocs\, researchers\, and other employees within Swedish academia\, introducing the analysis of next generation sequencing data. \n\n\n\nThe course is organized by: National Bioinformatics Infrastructure Sweden (NBIS) and National Genomics Infrastructure (NGI) \n\n\n\nResponsible teachers: Malin Larsson\, Martin Dahlö\, Roy Francis \n\n\n\nContact information: edu.intro-ngs@nbis.se  \n\n\n\n\n\n\n\n\n\nApply here\n\n\n\n\n\nCourse website\n\n\n\n\n\n\n\n\n\n\n\n\n\nImportant dates\n\n\n\nApplication open: Jun 7\, 2023 \n\n\n\nApplication deadline: October 4\, 2023 \n\n\n\nConfirmation to accepted participants: Week 41 (October 9-12) \n\n\n\n\n\n\n\nCourse fee\n\n\n\nThis on-site training event costs 3000 SEK for academic participants\, invoiced to the participant’s organisation. If you accept a position and do not participate (no-show) you will still be invoiced 3000 SEK. Please note that NBIS cannot invoice individuals. We ask non-academic applicants to contact us regarding the fee.  \n\n\n\n\n\n\n\nCourse description\n\n\n\nThis intense one-week workshop provides an introduction to the analysis of next generation sequencing data. Lectures on the theory of concepts will be paired with practical computational exercises in the Linux environment. The practical exercises will focus on data from the Illumina platform\, but we will discuss other sequencing platforms and the advantages and challenges to using their data during the lectures.  \n\n\n\n\n\n\n\nCourse content\n\n\n\nBriefly\, the workshop covers the followings major topics: \n\n\n\n\nWorking on the UNIX/LINUX command line\n\n\n\nBioinformatic/NGS data formats and QC\n\n\n\nDNA variant calling workflow essentials\n\n\n\nRNA sequence analysis workflow essentials\n\n\n\n\n\n\n\n\nLearning outcomes\n\n\n\nAfter this workshop you should be able to: \n\n\n\n\nDescribe the basic principles of next generation sequencing.\n\n\n\nUse the Linux command line interface to manage simple file processing operations\, and organise directory structures.\n\n\n\nConnect to and work on a remote high performance compute cluster.\n\n\n\nApply programs in Linux for analysis of NGS data.\n\n\n\nSummarise the applications of current NGS technologies\, including the weakness and strengths of the approaches and when it is appropriate to use which one of them.\n\n\n\nExplain common NGS file formats.\n\n\n\nInterpret quality control of NGS reads.\n\n\n\nExplain the steps involved in variant calling using whole genome sequencing data.\n\n\n\nIndependently perform a basic variant calling workflow on example data.\n\n\n\nDemonstrate hands-on experience with handling raw RNA sequencing data\, QC and quantification of gene expression.\n\n\n\nExplain the steps involved in differential gene expression using RNA seq data.\n\n\n\n\n\n\n\n\nEntry requirements\n\n\n\nTo be able to follow the workshop you need to: \n\n\n\n\nBYOL\, bring your own laptop configured according to precourse instructions.\n\n\n\nHave a background in genetics\, cell biology\, biomedicine\, biochemistry\, bioinformatics or comparable.\n\n\n\nTo get the maximum benefit from the workshop you should:\n\n\n\nHave a research project where you are currently using or are planning to use next generation sequencing.\n\n\n\n\n\n\n\n\n\n\nSelection criteria\n\n\n\nDue to limited space the course can accommodate a maximum of 30 participants. If we receive more applications\, participants will be selected based on several criteria. Selection criteria include correct entry requirements\, motivation to attend the workshop as well as gender and geographical balance. Priority is given to PhD scholars followed by other researchers\, and we will prioritise applications  from Swedish academia. URL:https://www.scilifelab.se/event/introduction-to-bioinformatics-using-ngs-data-3/ LOCATION:Navet\, SciLifeLab Uppsala\, SciLifeLab Uppsala\, BMC C11\, Husargatan 3\, Uppsala\, 75237\, Sweden CATEGORIES:Course ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20231115T123000 DTEND;TZID=Europe/Stockholm:20231116T123000 DTSTAMP:20260403T215349 CREATED:20230119T182051Z LAST-MODIFIED:20231114T233510Z UID:10000792-1700051400-1700137800@www.scilifelab.se SUMMARY:DDLS Annual Conference 2023; The emerging role of AI in data-driven life science DESCRIPTION:Image generated with DALL-E 3\n \n\n\n\n\n\n\n\n\nThis DDLS Annual Conference brings together the data-driven community in Life Science\, introduces newly appointed DDLS fellows\, and provides opportunities for networking across the research community and SciLifeLab infrastructures. The theme for 2023 is “the emerging role of AI in data-driven life science”\, and we are excited to welcome Prof. Dr. Fabian Theis\, Director of the Computational Health Center and Director of the Institute for Computational Biology and Rocio Mercado\, WASP Fellow\, Chalmers University of Technology as Keynote speakers. There will be presentations from DDLS fellows\, and invited speakers on how they use AI in their research and their future visions. The conference also features two pre-conference introductory lectures on AI for imaging and natural language processing and a post-conference workshop on AI model serving. \n\n\n\nTarget group: All scientists interested in data-driven research are welcome to join the 2-day lunch-to-lunch Conference in Stockholm. \n\n\n\nRegistration\n\n\n\nThe onsite event has reached total capacity. Please register as a Zoom participant to get access to the Zoom link. Feel free to add yourself to the waiting list\, and you will be notified by email if a place becomes available. \n\n\n\nRegistration for zoom link\n\n\n\n\n\n\n\nPoster session\n\n\n\nPoster session\, Flash Talk & Best Poster Award (click to open)\nPoster list \n\n\n\nPoster-List-DDLS-Annual-conference-2023Download\n\n\n\nPoster booklet\, including abstracts \n\n\n\nPoster-Booklet-DDLS-Annual-conference-2023Download\n\n\n\nThe DDLS Annual Conference Best Poster Award\, encourages the submission and exhibition of high-quality posters carried out by young scientists\, including Ph.D. students\, post-doctoral researchers\, etc. The poster should be on a topic related to data-driven life science. The Prize\, which is based upon the decision of a Scientific Committee-appointed Jury\, consists of a certificate and a travel grant of up to 5 000 SEK. The travel must be booked and ordered through the DDLS Support team and follow regular University travel policy. The trip should be completed before 2024-12-31. \n\n\n\nThe Best Poster Award winner for 2022 was Adelina Rabenius\, KTH\, and we are proud to support her attendance at an EMBO conference this summer. \n\n\n\nOrganizer: SciLifeLab\, host of SciLifeLab & Wallenberg National Program for Data-Driven Life Science\, on behalf of the DDLS Steering group. \n\n\n\n\nPre-conference introductory lectures \n\n\n\nIn the morning of the first conference day\, there will be two introductory lectures; one on AI within image analysis (by Anna Klemm from Bioimage Informatics Facility\, SciLifeLab) and one on large-language models (by Magnus Sahlgren from AI Sweden). The purpose of these lectures is to cover the basics and emerging role of AI within these two active fields. No prior knowledge of the fields is required. \n\n\n\nPost-conference activities\n\n\n\nNote! The Post-conference workshop and different DDLS stakeholder meetings will be handled separately and require separate registrations. \n\n\n\nWorkshop\n\n\n\nBuilding and sharing machine learning demo applications within life sciences: a practical tutorial. This event is now full\, you can register for the wait list only (in case we receive a cancellation). November 16\, at 13:30 – 15:30. SciLifeLab Campus Solna\, Tomtebodavägen 23. Meet-up in the Lobby. Room Gamma 2 Lunchroom. Participant list here \n\n\n\nStakeholder meetings\n\n\n\nDDLS Fellows meeting (DDLS Fellows only). November 16\, at 13:30 – 15:30. Biomedicum\, Solnavägen 9. Room B0317. Participant list here \n\n\n\nDDLS Fellows PhD & Postdocs meeting (for the PhD and Postdoc members of the DDLS Fellows research groups). November 16\, at 13:30 – 15:30. Biomedicum\, Solnavägen 9. Room B0313. Participant list here \n\n\n\nDDLS Cell and Molecular Biology Expert group meeting (for the CMB Expert group and the CMB Data Science Node). November 16\, at 15:30 – 17:30. SciLifeLab Campus Solna\, Tomtebodavägen 23. Room Earth \n\n\n\n\nDDLS Research area Cell and Molecular Biology Symposium\, Nov 17\n\n\n\nThe DDLS research area\, Cell and molecular biology\, invites you to the first in-person symposium on November 17 from 9 to 14. The day will be an introduction to the research area Fellows and Expert Group. \n\n\n\nMore information here\n\n\n\n\nProgram\n\n\n\nNovember 15\n\n\n\n09:30Venue: Jacob Berzeliussalen\, Berzelius väg 3\, SolnaRegistration is open from 09:30. Hang your poster from 09:30 to 12:30.10:00Pre-conference introductory lecture: AI in bioimage analysisAnna Klemm\, Uppsala University10:45Pre-conference introductory lecture: Large Language ModelsMagnus Sahlgren\, AI Sweden11:30Lunch12:30WelcomeOla Spjuth\, chair of Scientific Committee DDLS Annual ConferenceModerator: Ola Spjuth\, Uppsala University12:35Data-driven Life ScienceOlli Kallioniemi\, Director SciLifeLab13:00Blood proteome is a powerful tool to monitor human health and diseaseWen Zhong\, DDLS Fellow\, Linköping University 13:20Artificial intelligence-based computational pathology for precision diagnostics in breast cancerMattias Rantalainen\, KI13:40Coffee break 14:10Keynote: Generative AI for modeling single-cell state and responseFabian J. Theis\, Helmholtz Munich\, Technical University of Munich15:00Short breakModerator: Fredrik Johansson\, Chalmers15:155 x Flash Talks à 5 min per selected poster1. Gonzalo Uribarr2. Melisa Maidana Capitan3. Marcel Tarbier4. Sheng Joevenller5. Philipp Rentzsch 15:45Poster session with snacks and drinks17:30End of Day 117:30Speakers Dinner. Invited only. Speakers\, DDLS Steering Group\, DDLS Fellows\, Organizing committee\n\n\n\nNovember 16\n\n\n\n08:30CoffeeModerator: Laura Carroll\, Umeå University09:00From super resolution microscopy to modelling: how proteins spatial distribution regulates cellular processesJuliette Griffé\, DDLS Fellow\, Stockholm University09:20Multi-omics data integration with robust penalized regression identifies context-dependent signaling networksCemal Erdem\, DDLS Fellow\, Umeå University09:40AICell Lab: Laying the AI Foundation for Data-Driven Whole-Cell ModelingWei Ouyang\, DDLS Fellow\, KTH10:00Data Centre – capabilities and collaborationsJohan Rung\, SciLifeLab Data centre10:20Coffee break10:45Announcement of Best Poster Award10:50Keynote: Transforming Biomolecular Engineering Through AIRocio Mercado\, WASP Fellow\, Chalmers University of Technology Moderator: Johan Bengtsson-Palme\, Chalmers11:45Panel discussion about the emerging role of AI in DDLS12:30Lunch and end of DDLS Annual Conference13:30Post-Conference activities (separate registration)Building and sharing machine learning demo applications within life sciences: a practical tutorial. The event is fully booked.SciLifeLab Campus Solna\, Tomtebodavägen 23A. Room Gamma lunch room.DDLS Fellows meetingBiomedicum\, Solnavägen 9. Room B0317.DDLS Fellows PhD & Postdoc meetingBiomedicum\, Solnavägen 9. Room B0313.15:30End of Post-Conference activities15:30DDLS Cell and Molecular Biology Expert group meetingSciLifeLab Campus Solna\, Tomtebodavägen 23A. Room Earth.\n\n\n\nAbstracts\n\n\n\nPre-Conference Lectures\n\n\n\nAnna Klemm – AI in bioimage analysis\nIn this introductory lecture I will present how AI is used in bioimage analysis. The lecture will start with examples of “classical” image analysis to then explain the concepts of machine learning and AI-techniques in bioimage analysis. In the lecture I will give examples of life science projects in which we have trained convolutional neural networks to segment and classify structures of interest in the images\, or encode entire images. I will explain why we chose AI-based methods over classical image analysis and will also point to resources of the growing landscape of workflows\, pre-trained networks\, and repositories of freely available bioimage data + their annotations. \n\n\n\n\n\n\n\nExample of using a CNN for image segmentation on H&E-stained sections of mouse salivary glands. Segmentation starting from manually generated ground-truth\, using a Xception network model. Source: https://biifsweden.github.io/projects/2023/08/07/EduardoVillablanca2023-1/\, Xenia Tolstoy\, Christophe Avenel (BIIF) \n\n\n\n\nMagnus Sahlgren – Large Language Models\nThis presentation gives an introduction to and overview of the currently dominating trend in AI with Large Language Models (LLMs). We cover the theoretical background\, basic architectures\, training methodologies\, and capabilities of LLMs\, spotlighting models like the GPT series\, as well as Sweden’s national initiative GPT-SW3. We will touch upon diverse applications of LLMs in both the public and private sectors\, and address various considerations and challenges related to LLMs\, including biases\, transparency\, and societal implications. \n\n\n\n\nConference\n\n\n\nMartin Eklund – Prediction models and artificial intelligence for improving prostate cancer diagnostics and treatment\nProstate cancer diagnostics and treatment suffer from inefficient use of information for clinical decision making\, leading to high rates of overdiagnosis and overtreatment of indolent disease at the same time as prostate cancer is the leading cause of cancer death among men. We will in our presentation discuss how we are systematically trying to develop and clinically implement prediction models and artificial intelligence (AI) systems to address these inefficiencies. We will for example discuss the combination of the Stockholm3 test with MRI to improve prostate cancer diagnostics (Eklund et al. NEJM\, 2021; Nordström et al. Lancet Oncology\, 2021)\, and show results from the development of an AI-system for diagnosis and grading of prostate cancer in biopsies (Ström et al. Lancet Oncology\, 2020; Bulten et al. Nature Medicine\, 2022; Olsson et al. Nature Communications 2022)\, which we have demonstrated can performs on par with internationally leading uro-pathologist. We will also discuss the link between AI and clinical trials and how clinical trials can be transformed into continuous learning systems\, which we will exemplify with the ongoing ProBio trial for improving treatment for men with metastatic prostate cancer (Crippa et al. Trials\, 2020; De Laere et al. European Urology Focus\, 2022). \n\n\n\n\nCemal Erdem – Multi-omics data integration with robust penalized regression identifies context-dependent signaling networks\nCells integrate signals from different external stimuli to decide their fate\, such as growth or death. The “context” of a cell -the extracellular and intracellular environments- dictates the structure of signaling networks that determine such cellular responses. Identifying context-specific edges is vital for predicting and understanding cell decision-making logic. However\, robust identification of context-dependent network structures remains a broadly unsolved problem. Here\, I will talk about a pipeline we built previously to integrate multi-omics datasets using machine learning algorithms in a central-dogmatic view. Applying this pipeline to publicly available datasets\, we showed that it could pinpoint differentially activated pathways: (i) in response to two highly similar sister cytokines in breast epithelial cells and (ii) in breast tumor subtypes. I will conclude my talk with a vignette showing how such knowledge can further be utilized to explore new gene regulatory mechanisms. \n\n\n\n\nJuliette Griffié – From super resolution microscopy to modelling: how proteins spatial distribution regulates cellular processes\nSingle Molecule Localisation Microscopy (SMLM) is a fluorescence super-resolution microscopy technique which allows to image fluorophores in cells with unprecedented resolution (typically 10-30nm). It produces lists of localisations from which fundamental information about key cellular processes can be extracted. We will focus here on how SMLM data sets can be used as input to design dynamic models on cellular membrane biophysics. We will apply these data-driven models to reliably recapitulate and predict the nanoscale requirements for immune cells activation as well as to control and modify cellular signalling in the context of diseases. \n\n\n\n\nRocío Mercado – Transforming Biomolecular Engineering Through AI\nAI’s lightning-paced advancements are ushering in a new era of scientific research\, and the realm of molecular engineering stands as a prime beneficiary of this transformation. This talk explores the growing integration of AI in the life sciences\, with a primary emphasis on therapeutic discovery\, shedding light on the current state-of-the-art for molecular discovery and future prospects. We delve into the evolution of deep generative models and their practical applications in molecular engineering\, giving a few key examples of reinforcement learning and synthesizability-constrained design in this domain. Moreover\, we share recent progress in challenging application areas\, such as targeted protein degradation and synthesis prediction. With adaptive AI models\, capable of learning from vast datasets in real time\, we can streamline computational and experimental resources\, improving efficiency as we search through the complex chemical space. The talk will conclude with an overview of leading developments in AI which have yet to see widespread application in the life sciences\, offering new horizons for scientists exploring data-driven life science research. These innovative methodologies hold the potential to reshape conventional practices and bridge the gap between scientific exploration and AI-driven innovation. \n\n\n\n\nWei Ouyang – AICell Lab: Laying the AI Foundation for Data-Driven Whole-Cell Modeling\nAs part of the Data-Driven Life Science fellows program at SciLifeLab\, AICell Lab is actively laying the groundwork for a future powered by AI in cellular and molecular biology. With a focus on long-term strategic planning\, the lab is investing in state-of-the-art automated imaging farms\, complete with advanced microscopes\, robotic arms\, liquid handlers\, and automatic incubators. \n\n\n\nIn addition\, AICell Lab is developing specialized AI software to augment real-time microscopic imaging\, enable smart acquisition\, facilitate robotic control\, integrate multi-omics data\, and power AI-driven cell simulators\, among other functionalities. These preparatory steps align with the lab’s long-term vision to build large-scale\, comprehensive models of human cells\, utilizing both existing multi-omics datasets and new data generated in-house. \n\n\n\nThrough this focused preparation and investment\, AICell Lab aims to redefine in-silico cellular research and drug discovery\, contributing to a unified and systematic understanding of human cellular biology. \n\n\n\n\nFabian J. Theis – Generative AI for modeling single-cell state and response\nAdvances in single cell genomics nowadays allow the large scale construction of organ atlases. These can be used to study perturbations such as signaling\, drugs or diseases\, with large-scale access to state changes on the multi-omic and spatial level. This provides an ideal application area for machine learning methods to understand cellular response. With generative AI revolutionizing many fields of science by allowing researchers to explore uncharted territories\, generate novel hypotheses\, and simulate complex phenomena\, we ask how it has been enabling modeling single cell variation\, potentially towards a single cell foundation model. \n\n\n\nAfter reviewing deep generative representation learning approaches to identify the gene expression manifold\, I will shortly outline some applications on cell atlas building. Then I will discuss interpretable modeling of perturbations on this manifold\, in particular effect of drug responses as well as multiscale readouts such as disease state across patients\, and how to learn organism-wide cell type predictors. I will finish with extensions towards temporal and spatial observations. \n\n\n\n\nWen Zhong – Blood proteome is a powerful tool to monitor human health and disease\nThe rise of high throughput molecular technologies has shed lights on the development of next-generation molecular diagnostics and biomarkers for patient stratifications in the precision medicine era. There is an urgent need to develop new systematic tools to combine multi-omics data and link genotype to phenotype to expand our knowledge of complex traits of human diseases. Our research group mainly focuses on the integration of multi-omics\, the interplay between genetics and phenotypes\, and the development of data-driven strategies/tools for precision medicine. The aim is to investigate the molecular biomarkers for the estimation of disease risks\, early diagnosis of disease\, stratification of drug treatment response\, disease progression monitoring and the stratification of patients.  \n\n\n\n\nWorkshop \n\n\n\nBuilding and sharing machine learning demo applications within life sciences: a practical tutorial\nIt is becoming increasingly popular to share machine learning models with the community as web applications with an easy-to-use interface. Users can then adjust parameters or submit their own input and see the predictions generated by the underlying model. This tutorial is aimed at researchers working within life sciences who work with machine learning models but do not have the skills to build applications for web. During the tutorial we will start from a trained model and demonstrate step by step how you can create a graphical user interface for your application\, prepare it for deployment\, and make it available on the web with a URL. We will demonstrate the use of specific tools which make this process easy and doable within a couple of hours. \n\n\n\nThe workshop will last for 2 hours with a break in the middle. We have room to accept 30 participants\, on the first come first served basis. Those registered after that will be placed on the waiting list. \n\n\n\nNote that registration for the workshops is separate from the registration for the conference. Please see the workshop page for information on registration. \n\n\n\n \n\n\n\n\nScientific Committee\n\n\n\n\nChair: Ola Spjuth\, Uppsala University\n\n\n\nJohan Bengtsson-Palme\, Chalmers\n\n\n\nLaura Carroll\, Umeå University\n\n\n\nFredrik Johansson\, WASP\, Chalmers\n\n\n\n\nProject leader\n\n\n\n\nErika Erkstam\, Operations office URL:https://www.scilifelab.se/event/ddls-annual-conference-2023/ LOCATION:Jacob Berzelius salen\, KI\, Berzelius väg 3\, Solna\, 171 65\, Sweden CATEGORIES:Event ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/09/DDLS_cropped-Liten.jpeg END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20231116T093000 DTEND;TZID=Europe/Stockholm:20231116T170000 DTSTAMP:20260403T215349 CREATED:20231004T141040Z LAST-MODIFIED:20231109T155333Z UID:10000989-1700127000-1700154000@www.scilifelab.se SUMMARY:New Horizons for Swedish Sciences: World-unique (Bio)Solids Capabilities at the national UMU NMR facility DESCRIPTION:Inauguration of world-unique combined solid-state NMR equipment (MAS CryoNMR Probe + Ultrafast MAS NMR Probe) for the next application level in sciences ranging from bio and medical sciences to novel material and environment. Equipment is installed at the Umeå University KBC NMR core facility\, a national SciLifeLab and VR-RFI (SwedNMR) node. \n\n\n\nRead more\n\n\n\nProgram \n\n\n\nProgramInaugurationNMR20231116finalDownload URL:https://www.scilifelab.se/event/new-horizons-for-swedish-sciences-world-unique-biosolids-capabilities-at-the-national-umu-nmr-facility/ LOCATION:Carl Kempe-salen\, KBC Building\, Umeå University\, Umeå\, Sweden CATEGORIES:Event ORGANIZER;CN="Swedish NMR Centre":MAILTO:info@nmr.gu.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20231116T120000 DTEND;TZID=Europe/Stockholm:20231116T130000 DTSTAMP:20260403T215350 CREATED:20230711T115618Z LAST-MODIFIED:20231107T105923Z UID:10000935-1700136000-1700139600@www.scilifelab.se SUMMARY:Campus Solna Seminar Series: Greta Gudoityte & Stavros Azinas DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nThis week:\n\n\n\n\n\n\nGreta Gudoityte\n\n\n\nBrinton Seashore-Ludlow – alpha 4 \n\n\n\nInterplay between Cancer-Associated Fibroblasts and Ovarian Cancer. \n\n\n\n\n\nStavros Azinas\n\n\n\nMarta Carroni – gamma3 \n\n\n\nConfirmational insights of bacterial dissagregase CLPG. \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page. URL:https://www.scilifelab.se/event/campus-solna-seminar-series-nov-16/ LOCATION:Gamma-6-Pascal\, SciLifeLab\, Tomtebodavägen 23\, Solna\, 17165\, Sweden CATEGORIES:Community ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/09/IMG_20221103_123412496_HDR2-scaled.jpg ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se END:VEVENT END:VCALENDAR