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DTSTART;TZID=Europe/Stockholm:20220821T080000
DTEND;TZID=Europe/Stockholm:20220902T170000
DTSTAMP:20260404T050901
CREATED:20220328T095502Z
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SUMMARY:Integrative Structural Biology Course
DESCRIPTION:InfraLife is preparing a course in integrative structural biology where we cover not only the basics of state-of-the-art structural biology techniques\, but also how to combine the information to address a biological question. The course will take place in August 21-September 2\, in Lund\, Gothenburg and Stockholm. \n\n\n\nRead more\n\n\n\napply now!\n\n\n\nWhat will the course cover? \n\n\n\nThe two week course is a joint effort between the three large-scale research infrastructures SciLifeLab\, MAX IV and ESS and additional related platforms. The aim is to give an overview of the structural biology available at the research infrastructures in Sweden. The course will focus on understanding the sample requirements\, the nature of structural information that can be obtained and how data from multiple structural biology methods can be combined using e.g. computational chemistry techniques. The course consists of lectures\, key note speakers\, modelling practicals and facility visits. In addition events allowing time for networking within the group of students\, the teachers and other infrastructure personnel\, contributing to an expanded professional network. \n\n\n\nTechnologies and methods \n\n\n\nMacromolecular X-ray and neutron crystallographySmall angle X-ray and neutron scatteringCryo-electron microscopyMacromolecular nuclear magnetic resonance spectroscopyStructural mass spectrometryComputational chemistry techniquesBiophysical characterization \n\n\n\nWho should attend? \n\n\n\nThe course is open to scientists of all age from academia\, health care and industry. Level approximately corresponding to PhD student or postdoc depending on experience. Applicants welcome from Sweden\, the Nordics\, and other countries.
URL:https://www.scilifelab.se/event/integrative-structural-biology-course/
CATEGORIES:Course
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2021/05/Infralife-square.jpg
ORGANIZER;CN="InfraLife":MAILTO:events@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220829T080000
DTEND;TZID=Europe/Stockholm:20220902T170000
DTSTAMP:20260404T050901
CREATED:20220524T092955Z
LAST-MODIFIED:20220714T084938Z
UID:10000616-1661760000-1662138000@www.scilifelab.se
SUMMARY:Spatial omics data analysis
DESCRIPTION:This workshop provides resources to advanced tools for analysis of spatial datasets via a series of online lectures and computer practicals. The total course duration is 40 hours\, including the online lectures and practical coding workshop that will be held online. \n\n\n\nImportant dates\n\n\n\nApplication open: 2022-05-20 \n\n\n\nApplication deadline: 2022-07-31 \n\n\n\n\n\n\n\nCourse Leaders\n\n\n\nPaulo CzarnewskiChristophe Avenel\n\n\n\n\n\n\n\nLecturers and content creators\n\n\n\nLars BormCarolina WählbyGiovanni PallaNaveed IshaqueAnna SchaarDavid FischerHanna SpitzerSergio SallasÅsa BjörklundSebastian TiesmeyerLudvig BergenstråleEduard Chelebian\n\n\n\n\n\n\n\nContact information and Application\n\n\n\n\n\n\n\n\nCourse website\n\n\n\nEmail\n\n\n\nApplication\n\n\n\n\n\n\n\n\nCourse fee\n\n\n\nThis workshop is free of charge. \n\n\n\n\n\n\n\nCourse content\n\n\n\nTopics covered will include \n\n\n\nHands-on experience with ST (Visium)\, ISS\, scRNAseq data analysisFluorescence-based image formats\, standards and quality controlImage alignment\, registration and ISS decodingNuclei-based and segmentation-free cell identificationData imputation using ISS and single cell datasetsAnalysis of Spatial Transcriptomics datasetCell-type deconvolution (ST and single cell)Cell-cell and ligand-receptor interaction analysisMapping of multiple spatial data to a common referenceHigh-resolution projection of gene expression to H&E imagesInteractive visualisation of spatial omics data\n\n\n\n\n\n\n\nWho can apply?\n\n\n\nThis is an international course hosted by the National Bioinformatics Infrastructure Sweden (ELIXIR-SE) in collaboration with the Human Developmental Cell Atlas (HDCA)\, the Royal Institute of Technology\, Stockholm University\, Karolinska Institutet\, Uppsala University\, Charité Clinical University (ELIXIR-DE)\, Helmholtz Munich (Germany) and the European Molecular Biology Organisation. The course is open for PhD students\, postdocs\, group leaders and core facility staff working on spatial omics technologies. \n\n\n\nPlease note that NBIS training events do not provide any formal university credits. The training content is estimated to correspond to a certain number of credits\, however the estimated credits are just guidelines. If formal credits are crucial\, the student needs to confer with the home department before submitting a course application in order to establish whether the course is valid for formal credits or not. \n\n\n\nPractical exercises will be performed in Python\, so we only accept students that fulfill the entry requirements (see below). \n\n\n\n\n\n\n\nEntry requirements\n\n\n\nRequired for being able to follow the course and complete the practical exercises: \n\n\n\nBasic knowledge in PythonBe able to use your own computer with a web cameraHave miniconda3 installed in your computerDesirable: Previous experience with single cell RNA-seq analysis is an advantage.If we receive more applications\, participants will be selected based on several criteria. Selection criteria include correct entry requirements\, motivation to attend the course as well as gender and geographical balance.\n\n\n\nDue to limited space the course can accommodate a maximum of 32 participants. If we receive more applications\, participants will be selected based on several criteria. Selection criteria include correct entry requirements\, motivation to attend the course as well as gender and geographical balance.
URL:https://www.scilifelab.se/event/spatial-omics-data-analysis/
LOCATION:Online event via Zoom
CATEGORIES:Course
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/03/AdobeStock_218922152_front-scaled.jpg
ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220831T090000
DTEND;TZID=Europe/Stockholm:20220902T130000
DTSTAMP:20260404T050901
CREATED:20220511T071103Z
LAST-MODIFIED:20220511T071340Z
UID:10000604-1661936400-1662123600@www.scilifelab.se
SUMMARY:Snakemake BYOC (bring-your-own-code) workshop (ONLINE)
DESCRIPTION:National workshop open for PhD students (prioritized)\, postdocs\, researchers and others from all Swedish universities who have previously participated in the NBIS Tools for reproducible research course or with demonstrated experience in writing Snakemake workflows. \n\n\n\n\n\n\nCOURSE WEBSITE\n\n\n\nREGISTRATION\n\n\n\n\n\n\n\n\nImportant dates\n\n\n\nApplication opens:  May 15 \n\n\n\nApplication closes: June 17 \n\n\n\nConfirmation to accepted students:  June 28 \n\n\n\nResponsible teachers:  Verena Kutschera\, John Sundh\, Per Unneberg\, Marcel Martin \n\n\n\nContact information: edu.byoc-snakemake@nbis.se \n\n\n\n\n\n\n\nWorkshop fee\n\n\n\nThis online training event has no fee. However\, if you accept a position at the workshop and do not participate (no-show) you will be invoiced 1\,700 SEK. \n\n\n\n*Please note that NBIS cannot invoice individuals \n\n\n\n\n\n\n\nWorkshop content\n\n\n\nAs data analysis projects grow and change over time\, it gets increasingly difficult to keep track of how the different parts of the data analysis fit together. Workflow management systems such as Snakemake can be used to set up\, perform and monitor defined sequences of computational tasks (“workflows”)\, thereby making data analyses reproducible and scalable. Snakemake was developed in the bioinformatics community and has some features that make it particularly well suited for bioinformatics workflows. \n\n\n\nThe NBIS Tools for reproducible research course is held twice a year and provides an introduction into Snakemake and a tutorial to learn how to use Snakemake.This Snakemake BYOC (bring-your-own-code) workshop provides a follow-up to that introduction. Here\, participants will get support from experienced bioinformaticians to A) convert their data analysis from a programming language such as bash\, R or python into a Snakemake workflow\, or B) apply more advanced techniques to their existing Snakemake workflows. \n\n\n\n\n\n\n\nLearning outcomes\n\n\n\nAfter participation in the BYOC workshop\, participants will: \n\n\n\nBe able to create Snakemake workflows for bioinformatics data analysisDemonstrate knowledge of the structure and syntax of different types of Snakemake workflowsDemonstrate knowledge of advanced features of the Snakemake workflow language\n\n\n\n\n\n\n\nEntry requirements\n\n\n\nPrevious participation in the NBIS Tools for reproducible research workshop. The workshop is also open for participants who can demonstrate experience in writing Snakemake workflowsYour own bioinformatics analysis scripts in any programming language that you would like to convert into Snakemake OR your own Snakemake workflow that you would like to improveA computer with a webcam running Linux or Mac OS (if you run Windows and are accepted as a participant\, additional setup will be required). You will be asked to install the video conferencing software zoom (https://zoom.us/) to be able to participate in the workshop.\n\n\n\nThe workshop can accommodate a maximum of 16 participants. Selection criteria include correct entry requirements\, motivation to attend the workshop as well as gender and geographical balance. Academic affiliated registrants are prioritized prior to participants from the industry.
URL:https://www.scilifelab.se/event/snakemake-byoc-bring-your-own-code-workshop-online-2/
LOCATION:Online event via Zoom
CATEGORIES:Course
ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220901T090000
DTEND;TZID=Europe/Stockholm:20220901T160000
DTSTAMP:20260404T050901
CREATED:20220621T143720Z
LAST-MODIFIED:20220623T115813Z
UID:10000632-1662022800-1662048000@www.scilifelab.se
SUMMARY:InfraLife integrative structural biology - Open Day
DESCRIPTION:Save the date for a super Thursday! \n\n\n\nJoin in on the InfraLife integrative structural biology course\, open lectures Thursday sept 1st 2022. Lessons on modelling/computational methods and scientific key note: Feel free to join the course participants in lecture hall Air&Fire Campus Solna. \n\n\n\n9.00-10.30  \n\n\n\nDifferent approaches to the study of cotranslational protein foldingProfessor Gunnar von Heijne\, Stockholm University\,  \n\n\n\n10:45-12:00 \n\n\n\nThe protein structure prediction problem: from Anfinsen to AlphaFold.Principal Research Engineer Claudio Mirabello\,NBIS\, Linköping University\,  \n\n\n\n13:00-14:00 \n\n\n\nCoupling lipid nanoparticle structure and compositionResearch Specialist Hanna Barriga\, Karolinska Institutet \n\n\n\n14:00-15:00 \n\n\n\nIntegrative structural biology: Combining cryo-EM\, simulations and electrophysiology to understand membrane protein functionsProfessor Erik Lindahl\, Stockholm University \n\n\n\n15:15-16:00 \n\n\n\nIntegrating physics-based and evolutionary modelling to investigate the conformational dynamics of membrane proteinsAssociate professor Lucie Delemotte\, KTH\,  \n\n\n\nFollowed by SciLifeLab pub and InfraLife course poster sessions
URL:https://www.scilifelab.se/event/infralife-integrative-structural-biology-open-day/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Event
ORGANIZER;CN="InfraLife":MAILTO:events@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220901T120000
DTEND;TZID=Europe/Stockholm:20220901T130000
DTSTAMP:20260404T050901
CREATED:20220818T114306Z
LAST-MODIFIED:20220825T125309Z
UID:10000645-1662033600-1662037200@www.scilifelab.se
SUMMARY:Campus Solna Seminar Series: Ioannis Siavelis and Sarah McComas
DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an  initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5-10 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\n\n\n\nIoannis Siavelis\n\n\n\nJanne Lehtiö – alpha1 \n\n\n\nDetecting proteoforms from mass-spectrometry-based bottom-up proteomics \n\n\n\n\n\nSarah McComas\n\n\n\nLucie Delmotte – gamma3 \n\n\n\nSugar recognition and turnover for the mammalian fructose transporter GLUT5 \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page.
URL:https://www.scilifelab.se/event/campus-solna-seminar-series-sep1/
LOCATION:Milkyway SciLifeLab Solna\, Tomtebodavägen 23\, Solna
CATEGORIES:Community
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/08/logo_PhD_Postdoc_Council.png
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220902T110000
DTEND;TZID=Europe/Stockholm:20220902T120000
DTSTAMP:20260404T050901
CREATED:20220818T143018Z
LAST-MODIFIED:20220823T164130Z
UID:10000647-1662116400-1662120000@www.scilifelab.se
SUMMARY:Computer simulations of complex biological systems
DESCRIPTION:Welcome to a lecture by Professor Carmen Domene\, University of Bath\, UK.11.00-12.00 Friday September 2nd 2022 in Air&Fire lecture hall  \n\n\n\nSciLifeLab Campus Solna\, Tomtebodavägen 23. \n\n\n\nProf Domene’s research uses computational techniques to study the structure and dynamics of biological systems aiming to understand biochemical and biophysical processes from a microscopic perspective and thereby aid in interpreting and devising experiments.  \n\n\n\n \n\n\n\nA keynote lecture part if the InfraLife integrative structural biology course 2022
URL:https://www.scilifelab.se/event/computational-techniques-to-study-the-structure-and-dynamics-of-biological-systems/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2021/05/Infralife-square.jpg
ORGANIZER;CN="InfraLife":MAILTO:events@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220906T120000
DTEND;TZID=Europe/Stockholm:20220906T130000
DTSTAMP:20260404T050901
CREATED:20220831T130706Z
LAST-MODIFIED:20220905T112721Z
UID:10000661-1662465600-1662469200@www.scilifelab.se
SUMMARY:Instruments and methods at Umeå Centre for Electron Microscopy (UCEM)
DESCRIPTION:In the frame of the “SciLifeLab Site Umeå / KBC Infrastructure Seminar Series”\, the seminars will be organised every second Tuesday during autumn 2022\, in turn with IceLab Lunch Pitches. The seminars will be held in a hybrid format IRL in Glasburen\, KBC\, and online via Zoom. Take the chance to get information on facilities\, possibilities and services that infrastructure\, both SciLifeLab-associated and local\, can offer! Learn more about the seminar series and the schedule for autumn 2022 here. \n\n\n\nOn September 6th\, 12:00-13:00\, you are welcome to participate in the seminar \n\n\n\nInstruments and methods at Umeå Centre for Electron Microscopy (UCEM)\n\n\n\nby Linda Sandblad\, Centre Coordinator / Director \n\n\n\nRead more\n\n\n\nA guided tour to the UCEM facility could be organised for on-site participants after the seminar. \n\n\n\nRegistration:  \n\n\n\nSign up (latest by September 5th\, 10 a.m.) for on-site attendance to reserve your free lunch sandwich: \n\n\n\nor follow online via Zoom: https://umu.zoom.us/j/63138997026 (registration is not required). \n\n\n\nOrganisers: SciLifeLab Site Umeå and Chemical Biological Centre (KBC)
URL:https://www.scilifelab.se/event/instruments-and-methods-at-umea-centre-for-electron-microscopy-ucem/
CATEGORIES:Event
ORGANIZER;CN="SciLifeLab Ume%C3%A5":MAILTO:umea@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220907T080000
DTEND;TZID=Europe/Stockholm:20220909T170000
DTSTAMP:20260404T050901
CREATED:20220811T104626Z
LAST-MODIFIED:20220822T124149Z
UID:10000642-1662537600-1662742800@www.scilifelab.se
SUMMARY:Workshop on Data Visualization in R - Lund - CANCELLED
DESCRIPTION:National course open for PhD students (prioritized)\, postdocs\, researchers and other employees within all Swedish universities interested in learning to plot using different packages in R – CANCELLED \n\n\n\nThe course is organized by NBIS (ELIXIR-SE). \n\n\n\nResponsible teachers: Lokeshwaran Manoharan\, Louella Vasquez\, Markus Ringner \n\n\n\nContact information: edu.plotting.r@nbis.se \n\n\n\n\n\n\n\nImportant dates\n\n\n\nApplication open: Jul 28\, 2022 \n\n\n\nApplication deadline: Aug 21\, 2022 \n\n\n\nConfirmation to accepted participants: Aug 25\, 2022 \n\n\n\n\n\n\n\n\n\nApplication\n\n\n\n\n\nCourse website (previous version)\n\n\n\n\n\n\n\n\n\n\n\n\n\nCourse fee\n\n\n\nThis training event has no fee. However\, if you accept a position at the workshop and do not participate (no-show) you will be invoiced * 2000 SEK. \n\n\n\nA course fee* of 1300 SEK will be invoiced to accepted participants. This includes 3 lunches\, 1 dinner\, coffee and cakes. \n\n\n\n*Please note that NBIS cannot invoice individuals \n\n\n\n\n\n\n\nCourse description\n\n\n\nThis course aims to help researchers to visualize their data in different ways using R. This course will also aim to show researchers how they can make publication grade figures using R. A part of this course is also about making interactive plots that the researchers can view and share in a web-server to make interactive visualizations of the data. \n\n\n\n\n\n\n\nCourse content\n\n\n\nIn this course you will learn how to visualize your data in R. \n\n\n\nIn particular\, you will learn: \n\n\n\n·          how to format the data necessary for ggplot \n\n\n\n·          how to make bar-charts\, box-plots and others using ggplot \n\n\n\n·          how to make PCA plots in ggplot \n\n\n\n·          how to use R packages for heatmaps \n\n\n\n·          how to plot data on maps using R (optional) \n\n\n\n·          how to plot and handle phylogenetic trees in R (optional) \n\n\n\n·          how to make interactive plots in R using Rshiny \n\n\n\n·          how to host a Rshiny app in one of the available servers \n\n\n\n\n\n\n\nLearning outcomes\n\n\n\nBy the end of the course the participant will be able to: \n\n\n\n·          handle data in R for visualizations \n\n\n\n·          apply the grammar efficiently in ggplot to get the desired plot \n\n\n\n·          combine different data and/or different plots that are of publication-grade \n\n\n\n·          write your own simple Rshiny app \n\n\n\n·          deploy Rshiny apps in public servers.  \n\n\n\n\n\n\n\nEntry requirements\n\n\n\nRequired for being able to follow the course and to complete computer exercises: \n\n\n\nfamiliarity with using R and Rstudioa computer with R and Rstudioyou will be asked to install different R packages necessary for the course prior to the course. \n\n\n\n\n\n\n\nSelection criteria\n\n\n\nThe course can accommodate 25 participants. Selection criteria include correct entry requirements\, motivation to attend the course as well as gender and geographical balance. Academic affiliated registrants are prioritized prior to participants from the industry. \n\n\n\nPlease note that NBIS training events do not provide any formal university credits. The training content is estimated to correspond to a certain number of credits\, however the estimated credits are just guidelines. If formal credits are crucial\, the student needs to confer with the home department before submitting a course application in order to establish whether the course is valid for formal credits or not.
URL:https://www.scilifelab.se/event/workshop-on-data-visualization-in-r-lund-2/
LOCATION:Biologihuset\, Sölvegatan 35\, Lund\, 223 62\, Sweden
CATEGORIES:Course
ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220907T090000
DTEND;TZID=Europe/Stockholm:20220907T170000
DTSTAMP:20260404T050901
CREATED:20220616T170859Z
LAST-MODIFIED:20220907T075357Z
UID:10000627-1662541200-1662570000@www.scilifelab.se
SUMMARY:SciLifeLab Campus Solna Science Talks
DESCRIPTION:We would hereby like to warmly welcome you to take part in this year’s\, and the first IRL version\, of the Campus Solna Science Talks symposium on September 7th – a meeting for everyone in the community to learn more about ongoing research and activities at SciLifeLab’s Campus Solna\, which aims to bring the community together\, inspire exchange and new collaborations. \n\n\n\nResearch presentations will be given by group leaders and junior researchers (selected with consideration for balance in topics\, presenters’ career stages\, and affiliations) as part of a plenary session between 9:00 and 15:45 (including lunch)\, and the event will conclude with a poster session and mingle in Campus Solna’s meeting place Delta.  \n\n\n\nWe invite all Campus Solna research groups to be represented with at least 1 poster (and maximum 3). Furthermore\, we want to encourage all infrastructure units and committees (The Diversity\, Equity and Inclusion-committee\, the Public Engagement-committee\, and the PhD- & Postdoc-council) to partake with posters! \n\n\n\nregister here\n\n\n\n\n\n\n\n \n\n\n\n\n\n\n\nProgram\n08:30Arrival\, registration and coffeeSamuelssonsalen\, Karolinska Institutet09:00Welcome and opening of symposiumScientific Committee & Per Ljungdahl09:15Metabolic and spatio-temporal determinants of fungal virulencePer Ljungdahl09:30The role of co-translational mRNA decay in mRNA metabolism and gene regulationMengjun Wu09:45Metabolite interactions in the bacterial Calvin cycle and implications for flux regulationEmil Sporre10:00In vitro neurovascular modelsAnna Herland10:15Coffee Break11:00Unexpected CRISPR/Cas9 editing consequences when targeting non-coding genomic regionsKeyi Geng11:15From in situ to in vivo sequencingDaniel Fürth11:30Functional and transcriptomic mapping of serotoninergic projectionsJakub Mlost11:45Spatial inference through reconstruction of molecular networksIan Hoffecker12:00LunchLight lunch served for all registered participants13:00High-throughput screening to identify microproteins required for cell survivalDörte Schlesinger13:15Targeted peptide delivery using the Adaptable-Drug Affinity Conjugate (ADAC) technologySara Mangsbo13:30Characterizing dynamic cellular processes from static microscopy imagesJuliette Griffié13:45Adaptive three-dimensional super-resolution imaging deep through thick tissuesRuizhe Lin14:00Coffee Break14:45A mass-spectrometry draft of the COVID-19 plasma proteome: in-depth profiling and meta-analysisHaris Babačić15:00Structural analysis of proteolysis by MecA/ClpC/CLpP in S. aureusKarin Walldén15:15The wonders of small molecule transportDavid Drew15:30Tracking Molecular Modifications of Engaged Pol II Complexes at Nucleotide Resolution Genome-WideAnniina Vihervaara15:45Concluding Remarks16:00Poster SessionSciLifeLab Delta18:00Mingle\, pub and light food\n\n\n\n \n\n\n\n \n\n\n\n\n\n\n\n\nPoster Session\nEach group/unit is welcome to bring up to 3 posters to the grand Poster Session that will follow the talks. Submit the poster titles in the registration form. Please coordinate within your research group/unit beforehand who should bring a poster. Poster session will take place in the Delta building in SciLifeLab Solna. \n\n\n\nPoster dimensions: A1\, portrait orientation. \n\n\n\nPoster List is available here. \n\n\n\n \n\n\n\n\n\n\n\n\nScientific Committee\nThis event has been made possible through the hard work of the Scientific committee. \n\n\n\nScientific Committee \n\n\n\nErdinc SezginMarcel TarbierRyan HullVaishnovi SekarVicent PelechanoYerma Pareja SanchezPer Ljungdahl\n\n\n\nOperations Office representatives \n\n\n\nDisa Larsson HammarlöfDavid GottholdErika Erkstam
URL:https://www.scilifelab.se/event/scilifelab-science-talks/
LOCATION:Samuelssonsalen\, Tomtebodavägen 6\, Solna\, Sweden
CATEGORIES:Community
ORGANIZER;CN="SciLifeLab Event":MAILTO:events@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220907T140000
DTEND;TZID=Europe/Stockholm:20220907T150000
DTSTAMP:20260404T050901
CREATED:20220826T140811Z
LAST-MODIFIED:20220829T151653Z
UID:10000654-1662559200-1662562800@www.scilifelab.se
SUMMARY:Single-cell and spatial atlases of the adult and developing human brain
DESCRIPTION:Recently\, we have generated single-cell atlases of the adult and developing human brain using a combination of single-cell RNA sequencing and spatial transcriptomics. In the adult\, we found an unexpectedly high diversity of neuronal types especially in the midbrain and hindbrain\, with conservatively more than 3000 distinct types. In the developing human brain\, we revealed highly refined trajectories of differentiation of cortical neurons. We further found that astrocytes and oligodendrocytes were regionally patterned\, and that these region-specific types persisted in the adult. These findings may provide a basis for the brain region-specific occurrence of pediatric brain tumors. \n\n\n\n– \n\n\n\nSpeaker\n\n\n\nSten LinnarssonResearch Division of Molecular Neurobiology\, Karolinska Institutet\, Stockholm\, Sweden  \n\n\n\nHuman Developmental Dell Atlas (HDCA) is the Swedish effort within the human cell atlas (HCA)\, one of the largest international scientific projects. The project aim is to create a comprehensive molecular atlas of human prenatal development at the molecular resolution using state-of-the-art multi-omic technologies such as single-cell RNA-seq\, Spatial Transcriptomics\, in situ sequencing in order to provide deeper insight into how variations and deviations contribute to health and disease. \n\n\n\nThe HDCA Seminar Series 2022 invites you to join us on a journey of early human organogenesis of several organs at the single-cell and spatial resolution. Seminars will be held at SciLifeLab Gamma building on Wednesdays at 14:00 or 15:00 and also via Zoom. After each seminar\, we will have up to 30 min round up discussions with the speaker on how you can contribute to the atlas! \n\n\n\naccess zoom meeting
URL:https://www.scilifelab.se/event/single-cell-and-spatial-atlases-of-the-adult-and-developing-human-brain/
LOCATION:Gamma 2 Lunchroom\, SciLifeLab\, Tomtebodavägen 23\, Solna\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/08/logo_hdca.png
ORGANIZER;CN="The Human Developmental Cell Atlas":MAILTO:hdca-sweden@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220908T080000
DTEND;TZID=Europe/Stockholm:20220908T120000
DTSTAMP:20260404T050901
CREATED:20220906T102938Z
LAST-MODIFIED:20220906T103014Z
UID:10000671-1662624000-1662638400@www.scilifelab.se
SUMMARY:SciLifeLab Symposium in Microscale Acoustofluidics for Life Sciences
DESCRIPTION:SciLifeLab Symposium in Microscale Acoustofluidics for Life Sciences\, Sept. 8th 2022Organizers: Martin Wiklund (KTH) and Thomas Laurell (Lund University) \n\n\n\nLocation: Scilifelab\, Air/Fire\, Gamma-2\, Tomtebodavägen 23\, Solna \n\n\n\nProgram\n\n\n\n \n\n\n\nSession 1 (Air/Fire) \n\n\n\n08:20-08:30 Opening by Martin Wiklund\, KTH-Biophysics \n\n\n\n08.30-08.45 Cecilia Magnusson\, Lund\, ”Acoustic label-free isolation of circulating tumor cells in metastatic prostate cancer” \n\n\n\n08.45-09.00 Megan Havers\, Lund\, ”Silica seed particles improves performance in acoustic nanoparticle trapping” \n\n\n\n09.00-09.15 Axel Broman\, Lund\, ”Acoustic trapping for isolation of extracellular vesicles” \n\n\n\n09.15-09.30 Björn Hammarström\, KTH\, ”Acoustic focusing of protein crystals for improved sample delivery in serial crystallography” \n\n\n\n09.30-09.45 Thierry Baasch\, Lund\, ”High-throughput acoustic particle separation” \n\n\n\n09.45-10.00 Wei Qiu\, Lund\, ”High-performance bulk-wave-acoustophoresis devices using side actuation” \n\n\n\n10.00-10.30 coffee break (lobby outside Air/Fire) \n\n\n\nSession 2 (Air/Fire) \n\n\n\n10.30-10.45 Po-yin Chen\, Lund\, ”Microfluidic droplet shooter as a sample injection interface for MS” \n\n\n\n10.45-11.00 Niklas Sandström\, KTH\, ”Microwells for live cell assays” \n\n\n\n11.00-11.15 Valentina Carannante\, KTH-KI\, ”Multiplexed high-content screening of drug and immune sensitivity in microwells” \n\n\n\n11.15-11.30 Karl Olofsson\, KTH\, ”Multicellular tumor diskoids: A solid tumor model optimized for imaging” \n\n\n\n11.30-11.45 Giovanni Marinaro\, Lund\, “Design of acoustically-controlled ultrasmall droplet ejection in a microfluidic chip”
URL:https://www.scilifelab.se/event/scilifelab-symposium-in-microscale-acoustofluidics-for-life-sciences-sept-8th-2022/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Event
ORGANIZER;CN="Martin Viklund":MAILTO:martin.wiklund@biox.kth.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220908T100000
DTEND;TZID=Europe/Stockholm:20220908T110000
DTSTAMP:20260404T050901
CREATED:20220823T173956Z
LAST-MODIFIED:20220823T174018Z
UID:10000651-1662631200-1662634800@www.scilifelab.se
SUMMARY:Structural insights on the E-site specificity of the C. albicans ribosome
DESCRIPTION:Yury ZgadzayInstitute of Genetics and Molecular and Cellular Biology\, Strasbourg\, France \n\n\n\nDate: Thursday 08 September 2022Time: 10.00 – 11.00Location: Becquerel“Structural insights on the E-site specificity of the C. albicans ribosome”Host: Alexey Amunts
URL:https://www.scilifelab.se/event/structural-insights-on-the-e-site-specificity-of-the-c-albicans-ribosome/
LOCATION:Becquerel\, SciLifeLab\, Tomtebodavägen 23\, Solna
CATEGORIES:Community
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220908T120000
DTEND;TZID=Europe/Stockholm:20220908T130000
DTSTAMP:20260404T050901
CREATED:20220818T114815Z
LAST-MODIFIED:20220829T175913Z
UID:10000646-1662638400-1662642000@www.scilifelab.se
SUMMARY:Campus Solna Seminar Series: Ludvig Larsson and Alisa Alekseenko
DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an  initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nThis week:\n\n\n\n\n\n\nLudvig Larsson\n\n\n\nJoakim Lundeberg – alpha 3 \n\n\n\nSpatially resolved transcriptomics on degraded samples \n\n\n\n\n\nAlisa Alekseenko\n\n\n\nVicent Pelechano – gamma 5 \n\n\n\nSpatially resolved transcriptomics on degraded samples \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page.
URL:https://www.scilifelab.se/event/campus-solna-seminar-sep-8/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Community
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/08/logo_PhD_Postdoc_Council.png
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220908T120000
DTEND;TZID=Europe/Stockholm:20220909T120000
DTSTAMP:20260404T050901
CREATED:20220616T150853Z
LAST-MODIFIED:20220915T092128Z
UID:10000626-1662638400-1662724800@www.scilifelab.se
SUMMARY:Data-Driven Evolution and Biodiversity Research
DESCRIPTION:Mini-symposium \n\n\n\nWelcome to the first mini-symposium in data-driven evolution and biodiversity research sponsored by the Data-Driven Life Science (DDLS) program! At the mini-symposium\, the first group of DDLS Fellows in evolution and biodiversity will present themselves and their research plans. There will be several inspiring keynote talks\, presentations of the Swedish infrastructure for data-driven research in evolution and biodiversity\, and discussions of the future of the DDLS program. \n\n\n\nJoin us for an inspiring lunch-to-lunch meeting\, and help shape the future of data-driven evolution and biodiversity research in Sweden! \n\n\n\n\n\n\n\nHybrid event\n\n\n\nParticipate on site: New venue! Europasalen\, Konferenscentrum Wallenberg\, Medicinaregatan 20A\, Gothenburg\, Sweden. \n\n\n\nParticipate online: Online participation info\, e.g\, zoom link will be sent out upon registration \n\n\n\n\n\n\n\nDownload the Program here (PDF)  \n\n\n\nRegistration\n\n\n\n\n\n\n\nShort program\n\n\n\nThursday\, September 8\n\n\n\n12:00Lunch13:00Symposium starts (first day)17:00End of first day19:00SYMPOSIUM DINNER at Koks\, Vasagatan 9\, GothenburgAttendance is optional and the cost is the participant’s responsibility.\n\n\n\nFriday\, September 9\n\n\n\n08:30Symposium starts (second day)12:00Lunch\, end of the symposium\n\n\n\n\n\nPractical information\n\n\n\nIT support and adaptors will be available for presentersDeadline for onsite registration is August 29 (due to catering). Zoom registrations can be done until the event starts day 2.Lodging for September 8th is the attendee’s responsibility\, and there are many different kinds of options nearby the site. The speakers are booked at Hotel Poseidon.
URL:https://www.scilifelab.se/event/data-driven-evolution-and-biodiversity-research/
LOCATION:Europasalen\, Konferenscentrum Wallenberg\, Gothenburg\, Medicinaregatan 20\, Göteborg\, 413 90\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/06/AdobeStock_280363678-scaled.jpeg
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220911T080000
DTEND;TZID=Europe/Stockholm:20220916T170000
DTSTAMP:20260404T050901
CREATED:20220420T142106Z
LAST-MODIFIED:20220530T135853Z
UID:10000586-1662883200-1663347600@www.scilifelab.se
SUMMARY:Exploring the Human Proteome with Antibodies\, Transcriptomics and Mass Spectrometry
DESCRIPTION:The summer school is aimed at graduate students\, post-docs\, and young independent investigators who want to learn about new techniques to explore the proteins encoded by the human genome. The course will teach state-of-the-art analysis of the human proteins with a focus on antibody-based methods\, transcriptomics and mass spectrometry. The course will have several daily lectures by experts in the field and this will be complemented with workshops in which the participants will annotate genes/proteins. Each participant will take part in an annotation effort with the aim to go through all experimental evidence of the respective protein and to evaluate the quality of the underlying data to score the evidence for protein profiles and functionality. \n\n\n\nRead more\n\n\n\nThe course will be held at the Science for Life Laboratory located at the campus of Karolinska Institutet in proximity of the city center of Stockholm\, hosting researchers in the field of molecular bioscience affiliated with Karolinska Institutet\, Royal Institute of Technology and Stockholm University. The center has infrastructures for life science\, such as next generation sequencing\, proteomics\, single cell genomics\, bioimaging\, cryo-EM\, protein expression\, antibody engineering\, bioinformatics and systems biology. Accommodation and meals will be provided by the organizers. Social evenings and joined meals will provide ample opportunities for informal exchange with lecturers. \n\n\n\nMathias UhlenChair\, Organization Committee
URL:https://www.scilifelab.se/event/exploring-the-human-proteome-with-antibodiestranscriptomics-and-mass-spectrometry/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Course
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/04/FEBS-Advanced-course.png
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220912T080000
DTEND;TZID=Europe/Stockholm:20220916T170000
DTSTAMP:20260404T050901
CREATED:20220511T090525Z
LAST-MODIFIED:20220511T110221Z
UID:10000605-1662969600-1663347600@www.scilifelab.se
SUMMARY:Introduction to biostatistics and machine learning
DESCRIPTION:National course open for PhD students\, postdocs\, researchers and other employees in need of biostatistical skills within all Swedish universities. The course is geared towards life scientists wanting to be able to understand and use basic statistical methods. It would also suit those already applying biostatistical methods but have never got a chance to reflect on and truly grasp the basic statistical concepts\, such as the commonly misinterpreted p-value. \n\n\n\nImportant dates\n\n\n\nApplication open: now \n\n\n\nApplication closes: 2022-08-14 \n\n\n\nConfirmation to accepted students:  2022-08-19 \n\n\n\nResponsible teachers:  Olga Dethlefsen\, Eva Freyhult \n\n\n\nIf you do not receive information according to the above dates please contact \n\n\n\nedu.ml-biostats@nbis.se\, olga.dethlefsen@nbis.se\, eva.freyhult@nbis.se \n\n\n\n\n\n\n\n\nCOURSE WEBSITE\n\n\n\nAPPLICATION\n\n\n\n\n\n\n\n\nCourse content\n\n\n\nProbability theoryHypothesis testing and confidence intervalsResamplingLinear regression methodsIntroduction to generalized linear modelsModel evaluationUnsupervised learning incl. clustering and dimension reduction methodsSupervised learning incl. classification\n\n\n\n\n\n\n\nEducation\n\n\n\nIn this course we focus on an active learning approach. The course participants are expected to do some pre-course reading and exercises\, corresponding up to 40h studying. The education consists of teaching blocks alternating between mini-lectures\, group discussions\, live coding sessions etc. \n\n\n\n\n\n\n\nEntry requirements\n\n\n\nBasic R programming skillsBYOL (bring your own laptop) with R and RStudio installedNo prior biostatistical knowledge is assumed\n\n\n\nThe course can accommodate a maximum of 24 participants. If we receive more applications\, participants will be selected based on several criteria. Selection criteria include correct entry requirements\, motivation to attend the course as well as gender and geographical balance. \n\n\n\nCourse fee\n\n\n\n2000 SEK (includes lunches and coffee) \n\n\n\n*Please note that NBIS cannot invoice individuals
URL:https://www.scilifelab.se/event/introduction-to-biostatistics-and-machine-learning/
LOCATION:Navet\, SciLifeLab Uppsala\, SciLifeLab Uppsala\, BMC C11\, Husargatan 3\, Uppsala\, 75237\, Sweden
CATEGORIES:Course
ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220912T160000
DTEND;TZID=Europe/Stockholm:20220912T170000
DTSTAMP:20260404T050901
CREATED:20220905T092433Z
LAST-MODIFIED:20220914T005440Z
UID:10000669-1662998400-1663002000@www.scilifelab.se
SUMMARY:Clinical (phospho)-proteomics for precision medicine
DESCRIPTION:Clinical (phospho)proteomics for precision medicine \n\n\n\nWelcome to a lecture by Professor Connie R Jimenez\, Amsterdam University Medical Center\, Netherlands \n\n\n\n16.00-17.00 Monday September 12Air & Fire (Gamma 2) or via zoom https://kth-se.zoom.us/s/69393882589\n\n\n\n\n\n\n\nConnie Jimenez is Professor of Translational OncoProteomics at the Amsterdam University Medical Center in The Netherlands\, where she is heading the OncoProteomics Laboratory as well as the Proteomics Core Facility. \n\n\n\nShe is a molecular/cellular biologist with focus on the global analysis of the functional building blocks of life\, i.e.\, the proteins which activity and functions are highly deranged in disease. Her lab’s mission is to apply innovative mass spectrometry-based proteomics and data analysis to obtain systems biology insights into disease and to improve early diagnostics and treatment\, most notably of cancer and neurodegenerative disease. \n\n\n\nDuring her graduate studies at the Vrije Universiteit in Amsterdam (1993-1997)\, she pioneered single cell peptide profiling by mass spectrometry. During her post-doc in the Burlingame lab at UCSF\, San Francisco ((1997-1999)\, she applied proteomics to study neuron differentiation. In 2006\, she founded the OncoProteomics Laboratory (www.oncoproteomics.nl) with a start-up grant of the Cancer Center Amsterdam. \n\n\n\nTo date\, Dr. Jimenez (co)authored > 200 scientific peer reviewed articles. Underscoring her (inter)national esteem\, she founded the Netherlands Proteomics Platform in 2000 and is member of its steering board; she is general council member of the European Proteomics Association since 2005 and elected Vice-President since 2021; she is member of the steering committee of the Cancer HPP project of the Human Proteome Organisation. Finally\, she is editorial board member of several leading proteomics journals. \n\n\n\nThis keynote lecture is part of the FEBS Advanced Course – Exploring the Human Proteome
URL:https://www.scilifelab.se/event/clinical-phosphoproteomics-for-precision-medicine/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/04/FEBS-Advanced-course.png
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220913T130000
DTEND;TZID=Europe/Stockholm:20220913T150000
DTSTAMP:20260404T050901
CREATED:20220622T110134Z
LAST-MODIFIED:20220912T074601Z
UID:10000635-1663074000-1663081200@www.scilifelab.se
SUMMARY:Spatial and Single Cell Biology Webinar
DESCRIPTION:The Spatial and Single Cell Biology Platform at SciLifeLab invites you to a virtual event where you can learn about the service we provide within the field of spatial and single cell omics. Take the opportunity to learn about cutting edge methods including spatial transcriptomics with Visium\, in situ sequencing\, spatial proteomics using highly multiplexed imaging\, spatial metabolomics with MALDI imaging and advanced FISH technologies. The presentations will be given by our experts in there respective methods\, working within the platform.  \n\n\n\nThe event is open for anyone to attend\, who are interested in including spatial omics in their research projects or with a general interest to learn about the methods. \n\n\n\nregister here\n\n\n\n\n\n\n\nProgram\n\n\n\n13:00 Short introduction to the Spatial and Single Cell Biology platform13:10 Single cell sequencing  Anja Mezger13:25Spatial Transcriptomics  Xesus Abalo13:40In situ sequencing  Chika Yokota13:55Spatial Proteomics (multiplexed IF) Charlotte Stadler14:10Advanced FISH Technologies Quentin Verron14:25Spatial Mass Spectrometry Anna Nilsson14:40Additional Q&A and end of webinar
URL:https://www.scilifelab.se/event/spatial-and-single-cell-biology-webinar/
LOCATION:Online event via Zoom
CATEGORIES:Event
ORGANIZER;CN="Spatial and Single Cell Biology Platform":MAILTO:charlotte.stadler@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220913T150000
DTEND;TZID=Europe/Stockholm:20220913T164500
DTSTAMP:20260404T050901
CREATED:20220630T181908Z
LAST-MODIFIED:20220818T095034Z
UID:10000639-1663081200-1663087500@www.scilifelab.se
SUMMARY:SciLifeLab Navet Open House
DESCRIPTION:Welcome to SciLifeLab Navet Open House on September 13 from 15:00 to learn more about SciLifeLab and the possibility to book meetings in Navet. Take the chance to network and talk science! \n\n\n\n\n\nSome of the activities:• General presentation of SciLifeLab 15:30\, E10:1309\, Jenny Alfredsson\, Acting Head of Operations• A Quiz tour as a walk around Navet’s meeting rooms 15:00 – 16:00. Price ceremony at 16:15• SciLifeLab poster exhibition• Mingle photographer on site• Relaxed networking with the opportunity to meet several SciLifeLab representatives on site \n\n\n\nIf SciLifeLab representatives want to participate in the poster exhibition\, please contact lokalbokning@SciLifeLab.uu.se. \n\n\n\n\n\n\n\nFor catering reasons\, please Register here
URL:https://www.scilifelab.se/event/scilifelab-navet-open-house/
LOCATION:Navet\, SciLifeLab Uppsala\, SciLifeLab Uppsala\, BMC C11\, Husargatan 3\, Uppsala\, 75237\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/06/Navet-fasad-innegård-scaled.jpg
ORGANIZER;CN="Operations office":MAILTO:events@SciLifeLab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220913T160000
DTEND;TZID=Europe/Stockholm:20220913T170000
DTSTAMP:20260404T050901
CREATED:20220905T092248Z
LAST-MODIFIED:20220914T005216Z
UID:10000668-1663084800-1663088400@www.scilifelab.se
SUMMARY:Mass spectrometry-based proteomics: technological advances and their application to plasma and single cell type resolved tissue proteo
DESCRIPTION:Mass spectrometry-based proteomics: technological advances and their application to plasma and single cell type resolved tissue proteomics \n\n\n\nWelcome to a lecture by Professor Matthias Mann\, Max Planck Institute\, Germany. \n\n\n\n16.00-17.00 Tuesday September 13Air & Fire (Gamma 2) or via zoom https://kth-se.zoom.us/s/69393882589\n\n\n\n\n\n\n\nMatthias Mann obtained his PhD in chemical engineering at Yale\, contributing to the Nobel Prize for his supervisor John Fenn for electrospray ionization. He is a director at the Max Planck Institute of Biochemistry\, Munich and also director of the Department of Proteomics\, Novo Nordisk Foundation Center for Protein Research at the University of Copenhagen. He has obtained numerous prizes and is one of the most cited scientists with an h-factor of 250 and 300\,000 total citations (Google Scholar). He has pioneered advances in sample preparation\, chromatography\, mass spectrometry and computer algorithms\, making mass spectrometry applicable to molecular biology. Apart from proteomics technology development\, the team works on biological questions in systems biology. Today\, the main focus is on clinically relevant topics\, especially the analysis of the blood plasma proteome and cancer tissues at the single-cell level. \n\n\n\nThis keynote lecture is part of the FEBS Advanced Course – Exploring the Human Proteome
URL:https://www.scilifelab.se/event/mass-spectrometry-based-proteomics-technological-advances-and-their-application-to-plasma-and-single-cell-type-resolved-tissue-proteo/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/04/FEBS-Advanced-course.png
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220914T130000
DTEND;TZID=Europe/Stockholm:20220914T140000
DTSTAMP:20260404T050901
CREATED:20220905T091153Z
LAST-MODIFIED:20220906T122803Z
UID:10000666-1663160400-1663164000@www.scilifelab.se
SUMMARY:Mapping the development and regeneration of reproductive tissues
DESCRIPTION:Mapping the development and regeneration of reproductive tissues \n\n\n\nWelcome to a lecture by Roser Vento-Tormo\, Wellcome Sanger Institute\, UK. \n\n\n\n13.00-14.00 Wednesday September 14Air & Fire (Gamma 2) or via zoom https://kth-se.zoom.us/s/69393882589\n\n\n\n\n\n\n\nVento-Tormo’s research interest is to understand the influence of cellular microenvironments on individual cellular identities and responses\, in the context of development and immunity. Her team employs single-cell and spatial transcriptomics methods to deconstruct the cell signals in human organs and tissues\, and utilise this information to inform the reconstruction of novel in vitro models. Essential for this work\, is the novel computational tools her team develops to build cell–cell interactions networks from transcriptomics data. In her predoctoral research\, she studied the interplay between cell signalling and epigenetic machinery key to regulating cellular fate decisions in myeloid cells. She pursued her postdoctoral studies in the Teichmann laboratory as an EMBO / HFSP fellow\, where she developed CellPhoneDB.org\, a computational tool to study cell-cell communication from single-cell transcriptomics data. She used CellPhoneDB to disentangle the complex communication between maternal and fetal cells in the uterine-placental interface during early human pregnancy. Vento-Tormo work has been funded by many recognised international agencies (H2020\, MRC\, CZI\, Wellcome-LEAP)\, and she has recently obtained the Early Career Research Award from the Biochemistry Society (2021). \n\n\n\nThis keynote lecture is part of the FEBS Advanced Course – Exploring the Human Proteome
URL:https://www.scilifelab.se/event/mapping-the-development-and-regeneration-of-reproductive-tissues/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/04/FEBS-Advanced-course.png
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220914T140000
DTEND;TZID=Europe/Stockholm:20220914T150000
DTSTAMP:20260404T050901
CREATED:20220905T092055Z
LAST-MODIFIED:20220906T122905Z
UID:10000667-1663164000-1663167600@www.scilifelab.se
SUMMARY:Systems Analysis of Human Metabolism for Identification of Drug Targets and Biomarkers
DESCRIPTION:Systems Analysis of Human Metabolism for Identification of Drug Targets and Biomarkers \n\n\n\nWelcome to a lecture by Professor Jens Nielsen\, \n\n\n\nBioinnovation Institute\, Copenhagen\, Denmark. \n\n\n\n \n\n\n\n \n\n\n\n\n\n\n\nJens Nielsen is MSc in Chemical Engineering and PhD (1989) in Biochemical Engineering from the Danish Technical University (DTU). Fulbright visiting professor at MIT in 1995-1996. Professor at DTU in 1998. In 2008 he was recruited as Professor to Chalmers University of Technology\, Sweden. In 2015 he was founding Head of the Department of Biology and Biological Engineering\, which now encompass more than 200 people. Jens Nielsen was also a co-founder of the Novo Nordisk Foundation Center for Biosustainability that now have more than 300 people affiliated\, for which he served as CSO 2013-2018. From 2019 CEO of the BioInnovation Institute in Denmark\, which is a new institute financed by USD0.5B that fosters translational research and support new spin-out companies in life sciences. He has trained more than 280 scientists in his research group and published >850 publications that have been cited more than 98\,000 times (current H-factor 142). Inventor of >50 patents and founder of seven biotech companies. Has received numerous awards\, including the ENI Award\, the Eric and Sheila Samson Prime Minister Prize for Transportation Fuels\, the Novozymes Prize\, and the Gold Medal from the Royal Swedish Academy of Engineering Sciences. Member of 12 academies\, including NAS\, NAE\, Chinese Academy of Engineering\, EMBO and Royal Swedish Academy of Science. He will discuss the challenges of using systems medicine for advancing the development of personalized and precision medicine\, and it will be illustrated how the concept of genome-scale metabolic models can be used for integrative analysis of big data with the objective of identifying novel biomarkers that are foundational for personalized and precision medicine. \n\n\n\nThis keynote lecture is part of the FEBS Advanced Course – Exploring the Human Proteome
URL:https://www.scilifelab.se/event/systems-analysis-of-human-metabolism-for-identification-of-drug-targets-and-biomarkers/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/04/FEBS-Advanced-course.png
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220915T103000
DTEND;TZID=Europe/Stockholm:20220916T133000
DTSTAMP:20260404T050901
CREATED:20220620T071511Z
LAST-MODIFIED:20220831T142048Z
UID:10000628-1663237800-1663335000@www.scilifelab.se
SUMMARY:SciLifeLab Genomics platform retreat
DESCRIPTION:Very welcome to this event for the Genomics platform. We look forward to fun days with time to interact with new and old colleagues\, discuss science and our operation\, and get the latest information on the development of SciLifeLab and our platform. The meeting will take place at beautiful Haga Slott\, just outside of Enköping. \n\n\n\nThere will be buses that leave from BMC\, Uppsala and SciLifeLab Campus Solna at 09:00 on Sept. 15\, and return from Haga Slott at 13:30 on Sept. 16. \n\n\n\nRegistration has closed. \n\n\n\n\n\n\n\nFor questions about the program and participation\, contact magnus.lundgren@scilifelab.uu.se \n\n\n\nFor information about the venue\, see https://hagaslott.se/en/haga-castle/ \n\n\n\n\n\n\n\nProgram\n\n\n\nSeptember 1509:00 Buses depart from SciLifeLab Solna and BMC (Uppsala)10:00 Arrival Haga Slott and coffee10:30 The SciLifeLab Genomics platform: status\, plans and visions11:15 Scientific keynote “DeepTime genomics”\, Love Dalén\, Professor at Department of Zoology\, Stockholm University12:00 Lunch13:00 SciLifeLab national nodes: opportunities for synergies14:00 Check-in14:30 Coffee15:00 Social activity\, bring clothes and shoes suitable for being outside16:30 Free time for spa\, gym\, sauna swimming\, etc.18:00 Drinks reception19:00 DinnerSeptember 1609:00 Introduction to group discussion09:15 Group discussions\, including coffee break11:00 Summary of group discussions and meeting wrap-up12:00 Lunch13:30 Buses depart for SciLifeLab Solna and BMC (Uppsala)
URL:https://www.scilifelab.se/event/scilifelab-genomics-platform-retreat/
LOCATION:Haga slott\, Haga slott\, Enköping\, 745 93\, Sweden
CATEGORIES:Community
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220915T120000
DTEND;TZID=Europe/Stockholm:20220915T130000
DTSTAMP:20260404T050901
CREATED:20220818T145429Z
LAST-MODIFIED:20220907T191107Z
UID:10000648-1663243200-1663246800@www.scilifelab.se
SUMMARY:Campus Solna Seminar Series: Christoffer Mattsson Langseth
DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an  initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nThis week:\n\n\n\n\n\n\nTBD\n\n\n\nTBD \n\n\n\n\n\nChristoffer Mattsson Langseth\n\n\n\nMats Nilsson – gamma 4 \n\n\n\nSpatial mapping of oligodendroglial\, neuronal and immune cell-type heterogeneity in a model of multiple sclerosis \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page.
URL:https://www.scilifelab.se/event/campus-solna-seminar-series-sep-15/
LOCATION:Milkyway SciLifeLab Solna\, Tomtebodavägen 23\, Solna
CATEGORIES:Community
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/08/logo_PhD_Postdoc_Council.png
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220915T180000
DTEND;TZID=Europe/Stockholm:20220915T190000
DTSTAMP:20260404T050901
CREATED:20220906T122422Z
LAST-MODIFIED:20220906T122503Z
UID:10000672-1663264800-1663268400@www.scilifelab.se
SUMMARY:Molecular analysis of human diversity and its impact on drug discovery using iPS cells
DESCRIPTION:Molecular analysis of human diversity and its impact on drug discovery using iPS cells \n\n\n\n \n\n\n\nWelcome to a lecture by Professor Angus I. Lamond\, \n\n\n\nUniversity of Dundee\, UK. \n\n\n\n16.00-17.00 Thursday September 15 \n\n\n\nAir & Fire (Gamma 2) or via zoom https://kth-se.zoom.us/s/69393882589 \n\n\n\n\n\n\n\nProfessor Lamond has over thirty years of experience as a Principal Investigator\, studying molecular mechanisms regulating gene expression and pre-mRNA splicing. This includes major contributions to the biochemical analysis of the human splicing machinery and to the study of functional compartments and subnuclear bodies in mammalian cells. The AIL group have developed new methods and technical approaches in these fields that have advanced mechanistic studies at the molecular and cellular levels\, spanning biochemical\, microscopy and MS-based proteomics technologies. During the past fifteen years\, the AIL laboratory has developed and applied state of the art mass spectrometry-based proteomic approaches in research projects studying molecular mechanisms regulating gene expression in both human cells and model organisms. This includes\, specifically\, integrated poly-omics analyses of human induced pluripotent stem cells (hiPSCs)\, derived from both healthy donors and patient cohorts with inherited disorders. Other studies have focused on proteome dynamics in the context of biological response mechanisms and ongoing studies identifying and characterizing small molecule modulators of alternative splicing and analysis of how splicing mechanisms affect cell proteomes\, protein isoform expression and resulting cell phenotypes. He will describe the progress in using both quantitative\, MS-based proteomics and high throughput imaging technologies to characterize libraries of human induced pluripotent stem cell (iPSC) lines\, derived from hundreds of different donors\, and show how comparisons of such iPSC lines can provide a novel approach for assessing mechanisms of variable drug response and help to deliver more safe new drugs that cater for the needs of diverse human populations. \n\n\n\nThis keynote lecture is part of the FEBS Advanced Course – Exploring the Human Proteome
URL:https://www.scilifelab.se/event/molecular-analysis-of-human-diversity-and-its-impact-on-drug-discovery-using-ips-cells/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/04/FEBS-Advanced-course.png
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220919T100000
DTEND;TZID=Europe/Stockholm:20220919T110000
DTSTAMP:20260404T050901
CREATED:20220823T174147Z
LAST-MODIFIED:20220823T174148Z
UID:10000652-1663581600-1663585200@www.scilifelab.se
SUMMARY:Ribosome heterogeneity and specialization during temperature acclimation in plants
DESCRIPTION:Seidel\, Max Planck Institute of Molecular Plant Physiology\, Potsdam\, GermanyDate: Monday 19 September 2022Time: 10.00 – 11.00Location: Gamma“Ribosome heterogeneity and specialization during temperature acclimation in plants”Host: Alexey Amunts
URL:https://www.scilifelab.se/event/ribosome-heterogeneity-and-specialization-during-temperature-acclimation-in-plants/
LOCATION:Becquerel\, SciLifeLab\, Tomtebodavägen 23\, Solna
CATEGORIES:Community
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220921T110000
DTEND;TZID=Europe/Stockholm:20220922T120000
DTSTAMP:20260404T050901
CREATED:20220825T104709Z
LAST-MODIFIED:20220902T094832Z
UID:10000653-1663758000-1663848000@www.scilifelab.se
SUMMARY:AIDA-SciLifeLab days
DESCRIPTION:Welcome to AIDA-SciLifeLab days in Uppsala\, September 21-22\n\n\n\nAnalytic Imaging Diagnostics Arena\, AIDA\, is a national arena for research and innovation around artificial intelligence\, AI\, for medical image analysis. Here\, academia\, healthcare and industry meet to translate technological advances in AI technology into patient benefits in the form of clinically useful tools. AIDA is an initiative within the Strategic Innovation Program Medtech4Health\, a joint venture of VINNOVA\, Formas and the Energy Agency. AIDA offers funding\, technical infrastructure and a broad expert community. The community meets in regular intervals at AIDA-days; seminar days with current medical imaging themes. \n\n\n\n\n\n\n\nThe AIDA days are on tour\, our first stop was Stockholm KTH\, and this time we are happy to visit Uppsala. SciLifeLab and Carolina Wählby are kindly hosting the event. We will now have the great opportunity to get an insight into the work on AI in medical imaging in Uppsala – focus areas and ongoing projects. We can look forward to presentations in quantitative microscopy\, image classification\, image registration and the European Big Picture project (a central repository for digital pathology slides). In addition\, we will listen to two final AIDA project presentations by the research groups of Robin Strand – MRI guided real-time adaptive radiotherapy and Joel Kullberg – Advanced Body Composition Analysis in SCAPIS. Each AIDAday will end with a study visit: at the radiology department (MR-Linac) and the pathology department\, respectively.  \n\n\n\n\n\n\n\nRegistration\n\n\n\n\n\n\n\nProgram September 21\n\n\n\nProgram September 22\n\n\n\n\n\n\n\nShort Program\n\n\n\n \n\n\n\n\n\nSEPT. 21:Venue: Nya Ångström\, lecture hall 101136 B (floor1)11:00Internal meeting for AIDA members only 12:00Lunch (recommendation “Rullan”\, Nya Ångström)13:00Official program17:00End of program19:00After Work at Stationen (optional)SEPT. 22:Venue: SciLifeLab Navet\, Trippelrummet\, BMC\, entrance C1109:00Official program12:00End of program\n\n\n\n\n\n\n\n\nLunch and AW at your own expense. \n\n\n\n\n\n\nFor those who are not able to attend the AIDAdays physically\, a Zoom link will be distributed to registered participants prior to the meeting. Please register here! \n\n\n\nMost Welcome!
URL:https://www.scilifelab.se/event/aida-scilifelab-days/
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/08/image001.jpg
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220922T120000
DTEND;TZID=Europe/Stockholm:20220922T130000
DTSTAMP:20260404T050901
CREATED:20220818T153954Z
LAST-MODIFIED:20220912T093259Z
UID:10000649-1663848000-1663851600@www.scilifelab.se
SUMMARY:Campus Solna Seminar Series: Yuying Cheng and Osheen Sharma
DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an  initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nThis week:\n\n\n\n\n\n\nYuying Cheng\n\n\n\nSimon Elsässer – alpha 4 \n\n\n\nDefining histone variant H3.3 dynamics using pulse-chase experiment and computational modeling \n\n\n\n\n\nOsheen Sharma\n\n\n\nBrinton Seashore-Ludlow – alpha 4 \n\n\n\nImage based Drug Mechanism of Action Clustering using Deep Neural Networks \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page.
URL:https://www.scilifelab.se/event/campus-solna-seminar-series-sep-22/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Community
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/08/logo_PhD_Postdoc_Council.png
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220926T080000
DTEND;TZID=Europe/Stockholm:20220930T170000
DTSTAMP:20260404T050901
CREATED:20220523T075158Z
LAST-MODIFIED:20220523T100120Z
UID:10000614-1664179200-1664557200@www.scilifelab.se
SUMMARY:Introduction to bioinformatics using NGS data
DESCRIPTION:This is a national workshop open to PhD students\, post-docs\, and other researchers affiliated to Swedish academia and healthcare. The workshop is organised by the National Bioinformatics Infrastructure Sweden (NBIS) and National Genomics Infrastructure (NGI). \n\n\n\nThis intense one-week workshop provides an introduction to the analysis of next generation sequencing data. Lectures on the theory of concepts will be paired with practical computational exercises in the Linux environment. The practical exercises will focus on data from the Illumina platform\, but we will discuss other sequencing platforms and the advantages and challenges to using their data during the lectures. \n\n\n\nNBIS training events do not provide any formal university credits. Attendees with full attendance and completion of tasks will be issued a certificate of participation indicating topics covered and duration of the workshop. For more detailed information about workshop syllabus\, learning outcomes and entry requirements\, please visit the workshop website. \n\n\n\nImportant dates\n\n\n\nWorkshop: 26-Sep-2022 – 30-Sep-2022 \n\n\n\nApplication opens: 23-May-2022 \n\n\n\nApplication closes: 19-Aug-2022 \n\n\n\nConfirmation to accepted students: 26-Aug-2022 \n\n\n\nCourse fee\n\n\n\nThis on-site training event costs 2000 SEK invoiced to the participant’s organisation. If you accept a position and do not participate (no-show) you will still be invoiced 2000 SEK. Please note that NBIS cannot invoice individuals. \n\n\n\nContact\n\n\n\nnbis.se \n\n\n\nMalin Larsson\, Martin Dahlö\, Roy Francis \n\n\n\n\n\n\n\n\nWorkshop Website\n\n\n\nApplication
URL:https://www.scilifelab.se/event/introduction-to-bioinformatics-using-ngs-data/
LOCATION:Navet\, SciLifeLab Uppsala\, SciLifeLab Uppsala\, BMC C11\, Husargatan 3\, Uppsala\, 75237\, Sweden
CATEGORIES:Course
ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220926T090000
DTEND;TZID=Europe/Stockholm:20220926T100000
DTSTAMP:20260404T050901
CREATED:20220923T132853Z
LAST-MODIFIED:20220923T132926Z
UID:10000689-1664182800-1664186400@www.scilifelab.se
SUMMARY:Multiscale Modelling of Cancer Cell Motility and Tumour Evolution
DESCRIPTION:Paul Bates\, Cricks institute\, UK\n\n\n\n \n\n\n\n \n\n\n\n \n\n\n\nMultiscale Modelling of Cancer Cell Motility and Tumour Evolution \n\n\n\nSince Inhibiting metastasis is as crucial as minimising tumour growth for efficient treatment of cancer\, we constructed a multiscale model of cancer cell motility\, with our primary focus being on amoeboid type cell motility of metastasising tumour cells in the extracellular matrix (ECM).  Our model covered a wide parameter space and provided a deeper understanding of the conditions governing the motility of the cell at multiscale levels. Both the extracellular conditions (e.g. ECM density) and intrinsic cell properties (e.g. relative distribution of contractile and expanding regions of the cell membrane) were investigated.  The aim was to identify the combination of intrinsic properties metastasising cells are more likely to use under different extracellular conditions. After extensive benchmarking of the computational model using in vitro data\, we were able to predict cancer cell motility in vivo and under a number of different combinations of motility inhibitory\, such as key kinase inhibitors. We have also developed multiscale computer models to investigate how tumours evolve based upon Intra-tumour genetic heterogeneity (ITH)\, which fuels ongoing clonal evolution. Despite clarified clonal structure and acknowledged role of ITH in disease progression within our recent tumour study\, investigating clear-cell renal cell carcinomas (ccRCCs)\, there lacks characterisation of ongoing evolution that may inform future risk. By the combination of computer modelling and experimental analysis\, we investigated spatial features of narrow-scale clone diversity (microdiversity) and parallel evolution on the impact of spatial tumour growth. We observed frequent microdiversity hotspots and parallel evolution near the tumour margin and uncovered a scaling relationship between the area spanned by a genomic alteration and the number of subclones within that area\, in simulated tumours of 66 ccRCCs. Furthermore\, in-silico time-course studies showed that different modes of spatial growth caused varying extents and tempos of subclonal diversification.  Interestingly\, evolutionary trajectories were often predictable early\, suggesting that spatially resolved sampling combined with sequencing may enable identification of evolutionary potential in early-stage tumours.
URL:https://www.scilifelab.se/event/multiscale-modelling-of-cancer-cell-motility-and-tumour-evolution/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Event
END:VEVENT
END:VCALENDAR