BEGIN:VCALENDAR VERSION:2.0 PRODID:-//SciLifeLab - ECPv6.15.18//NONSGML v1.0//EN CALSCALE:GREGORIAN METHOD:PUBLISH X-WR-CALNAME:SciLifeLab X-ORIGINAL-URL:https://www.scilifelab.se X-WR-CALDESC:Events for SciLifeLab REFRESH-INTERVAL;VALUE=DURATION:PT1H X-Robots-Tag:noindex X-PUBLISHED-TTL:PT1H BEGIN:VTIMEZONE TZID:Europe/Stockholm BEGIN:DAYLIGHT TZOFFSETFROM:+0100 TZOFFSETTO:+0200 TZNAME:CEST DTSTART:20230326T010000 END:DAYLIGHT BEGIN:STANDARD TZOFFSETFROM:+0200 TZOFFSETTO:+0100 TZNAME:CET DTSTART:20231029T010000 END:STANDARD BEGIN:DAYLIGHT TZOFFSETFROM:+0100 TZOFFSETTO:+0200 TZNAME:CEST DTSTART:20240331T010000 END:DAYLIGHT BEGIN:STANDARD TZOFFSETFROM:+0200 TZOFFSETTO:+0100 TZNAME:CET DTSTART:20241027T010000 END:STANDARD BEGIN:DAYLIGHT TZOFFSETFROM:+0100 TZOFFSETTO:+0200 TZNAME:CEST DTSTART:20250330T010000 END:DAYLIGHT BEGIN:STANDARD TZOFFSETFROM:+0200 TZOFFSETTO:+0100 TZNAME:CET DTSTART:20251026T010000 END:STANDARD END:VTIMEZONE BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20240827T120000 DTEND;TZID=Europe/Stockholm:20241001T120000 DTSTAMP:20260404T234332 CREATED:20240615T115304Z LAST-MODIFIED:20240615T115305Z UID:10001278-1724760000-1727784000@www.scilifelab.se SUMMARY:Data-Driven Life Sciences Course 2024 (Online) DESCRIPTION:Welcome to the Data-driven Life Sciences 2024 course\, where you will explore the intersection of data science\, artificial intelligence\, and life sciences to drive innovation and discovery. This fully online course culminates in an in-person hackathon\, fostering a vibrant community that gathers the DDLS and SciLifeLab members. \n\n\n\nThe 6 modules aim to introduce learners to computer-driven life sciences\, covering application areas in data-driven life sciences. Guest lecturers (DDLS Fellows\, SciLifeLab fellows\, and SciLifeLab facility training providers) will teach topics including technologies and analysis of data sets from proteomics\, transcriptomics\, biomolecular structure\, molecular dynamics simulations\, and various imaging techniques. These modules present\, analyze\, and discuss models of biological phenomena and related scientific breakthroughs based on such data analysis. \n\n\n\nRegistration\n\n\n\nAs prerequisites for the course\, we recommend that you have a look at the following resources: \n\n\n\n\nPlease have a look at the SciLifeLab Data-Driven Life Science (DDLS) initiative website to understand what data-driven life sciences are\, and how Sweden is investing in this area. Focus in particular on the concept of the data life cycle\, which is central in this class.\n\n\n\nWe will use Python as the main programming language in the computer lab\, so please make sure you know the basics of Python. \n\n\n\n\nFor the computer lab\, you will need a computer with internet access\, and make sure you have the following set up: \n\n\n\n\nInstall the latest browser\, e.g. Chrome\n\n\n\nRegister a Google account for the Google Colab access and use the Google Drive\n\n\n\nRegister a ChatGPT account (Note: No need to subscribe to the paid version of ChatGPT\, using the free version is sufficient for this course)\n\n\n\nRegister a Github account for versioning of the code\n\n\n\n\nLearning objectives:  \n\n\n\n\nDescribe the field of data-driven life sciences\n\n\n\nPresent an overview of various application areas\n\n\n\nProvide examples of applications and their associated analysis methods\n\n\n\nApply statistical and machine learning analysis to biological data sets\n\n\n\nFormulate models of biological phenomena\n\n\n\nPresent and review scientific literature in computer-driven life sciences\n\n\n\nReflect on the ethical consequences of data-driven life sciences\n\n\n\nPractice good data management\, including collection\, handling\, sharing\, and analysis\n\n\n\n\nFor questions\, contact the course leader Wei Ouyang at weio@kth.se URL:https://www.scilifelab.se/event/data-driven-life-sciences-course-2024-online/ LOCATION:Online event via Zoom CATEGORIES:Course END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20240828T100000 DTEND;TZID=Europe/Stockholm:20240828T150000 DTSTAMP:20260404T234332 CREATED:20240419T094002Z LAST-MODIFIED:20240422T112735Z UID:10001236-1724839200-1724857200@www.scilifelab.se SUMMARY:Data Delivery System (DDS) Workshop for Unit Users DESCRIPTION:We invite current and future users of the Data Delivery System (DDS) from SciLifeLab units to join us for a workshop. \n\n\n\nWhen: August 28 in Alfa 2 Milky Way\, SciLifeLab Solna. \n\n\n\nRegister: Register before Aug 23 24.00 \n\n\n\nMax participants: 20 \n\n\n\nThe workshop will include hands-on introductions to registration\, client installation & project access management\, as well as troubleshooting common issues. There will also be a session looking to the future of DDS: future plans and gathering end-user input (e.g. what are the personas amongst your unit’s data recipients?). \n\n\n\nThis workshop is limited to 20 participants and\, we’d love as many SciLifeLab units as possible to be represented\, so would really appreciate you coordinating within your unit to decide who should attend. If there is sufficient demand\, this workshop will run again in the future. \n\n\n\nRegister\n\n\n\nPractical Information\n\n\n\nThe workshop will take place in-person at the SciLifeLab Solna campus. Participants must bring their own laptops for the hands-on component of the day. Lunch will be provided ( if you have dietary restrictions please note this in the registration) \n\n\n\nPreliminary Agenda\n\n\n\n09:30-10:00Fika10:00-10:10Welcome & practical info10:10-10:25Intro to DDS 10:30-12:00Registration\, client installation & project access12:00-13:00Lunch13:00-13:45Project life cycle & support14:00-15:00Future development & user input\n\n\n\nContact information\n\n\n\n\nFor questions contact the Data Delivery System team at SciLifeLab Data Centre. Contact person: Aishling Cooke\n\n\n\nEmail: delivery@scilifelab.se URL:https://www.scilifelab.se/event/dds-workshop-for-unit-users/ LOCATION:SciLifeLab Campus Solna\, Tomtebodavägen 23 A\, Solna\, Sweden CATEGORIES:Course ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2024/04/Skarmavbild-2024-04-19-kl.-11.30.56-1.png ORGANIZER;CN="SciLifeLab Data Centre":MAILTO:datacentre@scilifelab.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20240829T090000 DTEND;TZID=Europe/Stockholm:20240830T170000 DTSTAMP:20260404T234332 CREATED:20240529T151739Z LAST-MODIFIED:20240715T101009Z UID:10001271-1724922000-1725037200@www.scilifelab.se SUMMARY:Sixth SWACCS Junior Academy Workshop (JAWS) DESCRIPTION:JAWS is a workshop organized by the Swedish Academic Consortium on Chemical Safety (SWACCS)\, Stockholm University and Karolinska Institutet for PhD students\, master students\, postdocs and researchers working in all fields related to chemicals\, health and the environment. We’re offering exciting presentations\, great networking opportunities\, and a workshop on how to write a press release for your own research. Also\, join us one day early (on August 28th) and be part of the SWACCS Regulatory Toxicology II course’s concept mapping workshop\, where you can learn more about the various kinds of scientific evidence being used by different organizations in society and how these sectors interact and collaborate with one another to reach the goal of a chemical safe future. \n\n\n\nContact \n\n\n\nSolveig Thielesolveig.thiele@scilifelab.se \n\n\n\n \n\n\n\nAugust 29 \n\n\n\n\nPresentations and perspectives on the topic “Can you be a scientist and an activist at the same time – how to reach out with your science in a non-academic way?”\n\n\n\nDinner (potential charge of 200 kr) \n\n\n\n\nAugust 30 \n\n\n\n\nWorkshop – “Reaching a broader audience with your research and learning how to write a press release.” Present and discuss your research with the other participants!\n\n\n\nMingle\n\n\n\n\nWe can only offer a limited number of spots\, so be quick to register. PhD students will be prioritized. Participants can earn credits for this workshop. URL:https://www.scilifelab.se/event/sixth-swaccs-junior-academy-workshop-jaws/ LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden CATEGORIES:Event ORGANIZER;CN="Swedish Academic Consortium on Chemical Safety (SWACCS)":MAILTO:solveig.thiele@scilifelab.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20240829T110000 DTEND;TZID=Europe/Stockholm:20240830T134500 DTSTAMP:20260404T234332 CREATED:20240712T114659Z LAST-MODIFIED:20240829T072610Z UID:10001309-1724929200-1725025500@www.scilifelab.se SUMMARY:Pandemic Laboratory Preparedness Retreat 2024 DESCRIPTION:The SciLifeLab Pandemic Laboratory Preparedness (PLP) program\, started in 2021\, acts to meet society’s need for efficient use of resources\, training and education\, to propagate skills and setting up technologies and equipment to be better equipped for new pandemics. \n\n\n\nThe PLP-retreat aims at strengthening the PLP network as well as an opportunity to highlight and discuss how the PLP program can evolve and be sustainable in the future. \n\n\n\nWith a poster session and focused group discussions on the key questions for pandemic preparedness\, we believe this will be a highly rewarding event for the participants\, and will spur many new ideas on how pandemic preparedness can be structured in the future.   For PLP members and collaborators onlyThe program below will be continuously uppdated \n\n\n\nThursday\, August 29\n\n\n\n11:00Bus departure from SciLifeLab Uppsala/BMC Bus departure from SciLifeLab Solna Bus departure from Stockholm City Terminal (Gate 5)11:15Bus departure from Arlanda From outside terminal 4 (map)11:45LunchAronsborg12:30Plenary PresentationsStockholmsalenChair: Jessica Alm\, Karolinska Institutet12:30Welcome and Introduction Jessica Alm\, Karolinska Institutet12:40SciLifeLab Pandemic Laboratory Preparedness CapabilityStaffan Svärd\, Uppsala University13:00Evaluation of large-scale testing and contact tracing during the pandemic for better preparednessSara Byfors\, Swedish Public Health Agency13:20Short Break13:40Pandemic vaccination: how should we do it next time?Helena Hervius Askling\, Karolinska Institutet14:00Discussion: Prospective about MpoxSara Byfors\, Swedish Public Health AgencyHelena Hervius Askling\, Karolinska InstitutetAntonio Gigliotti Rothfuchs\, Karolinska Institutet14:20Preparedness for human biomonitoring – a toxicologists viewMattias Öberg\, Karolinska Institutet14:40Coffee Break15:10Flash TalksModerated by Peter Nilsson\, KTH16:20Who is the PLP master?Ulf Ribacke\, Karolinska Institutet16:50Concluding Remarks\, poster hanging and check-in to hotel18:00Mingle and Poster SessionUpplandssalen19:00Dinner21:00After Dinner MingleCrillo\n\n\n\n \n\n\n\n \n\n\n\nFriday\, August 30\n\n\n\n08:45Check out from hotel09:00Plenary PresentationsUpplandssalenChair: Staffan Svärd\, Uppsala University09:05What to expect when you’re not expectingBill Hanage\, Harvard University\, USA09:30Investigating the evolution of  panzootic H5N1 in mammalsThomas Peacock\, Pirbright Institute\, UK10:00Short Break10:15Pandrug-resistant gram-negative bacteria in Ukraine  – will they spread beyond hospitals?Kristian Riesbeck\, Lund University10:45Group Discussion IntroductionsStaffan Svärd\, Uppsala University10:50Coffee Break and Group Discussions12:00Group Discussion Summary in plenary; 1-2 min per groupModerator Staffan Svärd\, Uppsala University12:35Wrap-Up and taking down the posters12:40Bus Transfer to Arlanda Airport Brown paper bag-lunch to go.12:45Lunch13:45Bus Transfer to Stockholm City Terminal (via SciLifeLab Campus Solna) Bus Transfer to SciLifeLab Uppsala/BMC \n\n\n\n \n\n\n\n\n\nScientific Committee\n\n\n\nThe program has been developed by the Scientific committee. \n\n\n\n\nStaffan Svärd\, PLP Scientific lead\, Uppsala University \n\n\n\nUlf Ribacke\, PLP Scientific co-lead\, Karolinska Institutet & Uppsala University  \n\n\n\nJessica Alm\, Karolinska Institutet  \n\n\n\nPeter Nilsson\, KTH;\n\n\n\nDaniel Sheward\, Karolinska Institutet\n\n\n\nAlice Sollazzo\, Coordinator PLP-Program at SciLifeLab\, Alice.sollazzo@scilifelab.uu.se URL:https://www.scilifelab.se/event/plp-retreat-2024/ LOCATION:Aronsborg Konferenshotell\, Helgövägen 7\, Bålsta\, 746 30 CATEGORIES:Event ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2023/10/PLP_main.jpg ORGANIZER;CN="Pandemic Laboratory Preparedness at SciLifeLab":MAILTO:alice.sollazzo@scilifelab.uu.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20240829T120000 DTEND;TZID=Europe/Stockholm:20240829T130000 DTSTAMP:20260404T234332 CREATED:20240708T134205Z LAST-MODIFIED:20240819T084728Z UID:10001293-1724932800-1724936400@www.scilifelab.se SUMMARY:Campus Solna Seminar Series: Jianyu Shen & Riccardo Mosca DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 20 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nPhD students that are attending the Campus Solna Seminar lectures will have the opportunity to gain credits. For the syllabus and instructions on how to obtain these credits\, read this document. Please contact your own department at your host University to confirm.See here the full schedule for this semester. \n\n\n\nThis week:\n\n\n\n\n\n\nJianyu Shen\n\n\n\nThomas Helleday – alpha 5 \n\n\n\nConverting Cold into Hot Tumors by Mitotic MTH1 Inhibitor TH1579 Treatment \n\n\n\n\n\nRiccardo Mosca\n\n\n\nClaudia Kutter – gamma 5 \n\n\n\nDeciphering riboregulation in healthy and disease \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page. URL:https://www.scilifelab.se/event/campus-solna-seminar-series-jianyu-shen-riccardo-mosca/ LOCATION:Milkyway SciLifeLab Solna\, Tomtebodavägen 23\, Solna CATEGORIES:Community ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/12/IMG_4110-scaled.jpg ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20240902T080000 DTEND;TZID=Europe/Stockholm:20240905T170000 DTSTAMP:20260404T234332 CREATED:20240826T143600Z LAST-MODIFIED:20240828T134939Z UID:10001338-1725264000-1725555600@www.scilifelab.se SUMMARY:Integrated Structural Biology - Open Lectures at Campus Solna DESCRIPTION:You are welcome to attend any or all of the open lectures and presentations that are part of the 2024 Integrated Structural Biology course\, taking place from September 2-5 at Campus Solna’s Air & Fire venue. \n\n\n\nThese lectures are open to all researchers at SciLifeLab. No registration is required—simply join us at Air & Fire during the scheduled sessions to participate. \n\n\n\nMonday September 2\, 2024 \n\n\n\n14:00-16:00\, Crystallography by Esko Oksanen\, instrument scientist at the European Spallation Source (ESS) \n\n\n\n16:00-17:00\, Project presentation from previous students\, Julia Kinsolving\, Nour Aldin Kahlous and ​Szabolcs Bódizs \n\n\n\n18:00 Student poster session and mingle – pub is open \n\n\n\nWednesday September 4\, 2024 \n\n\n\n9:00-12:00\, Cryo-EM lectures by Tim Schulte\, Stockholm University and Marta Carroni\, Stockholm University. \n\n\n\nThursday September 5\, 2024 \n\n\n\n09:30-10:30\, Computational aspects​ of structural biology\, lecture by Erik Lindahl\, Stockholm University \n\n\n\n11:00-12:00\, Scientific presentations by Marta Bonasconi\, Stockholm University and John Cowgill\, Stockholm University \n\n\n\n13:00-14:00\, Biophysical characterization by Maria Sunnerhagen\, Linköping University and ProLinC \n\n\n\n14:00-14.45\, Drug Discovery and Development platform\, by Esmeralda Woersternek\, Karolinska Institutet URL:https://www.scilifelab.se/event/integrated-structural-biology-open-lectures-at-campus-solna/ LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden CATEGORIES:Community ORGANIZER;CN="InfraLife":MAILTO:events@scilifelab.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20240902T080000 DTEND;TZID=Europe/Stockholm:20240913T170000 DTSTAMP:20260404T234332 CREATED:20240402T105825Z LAST-MODIFIED:20240604T091422Z UID:10001222-1725264000-1726246800@www.scilifelab.se SUMMARY:Integrated Structural Biology course 2024 DESCRIPTION:Welcome to the Integrated Structural Biology course\, 2nd edition \n\n\n\nOrganized by SciLifeLab in collaboration with PPS (Protein Production Sweden)\, ESS (European Spallation Source)\, MAX IV\, ProLinC\, NSC (National Supercomputer Centre)\, SwedNMR and InfraLife. \n\n\n\nSeptember 2-13 in Stockholm\, Linköping\, Lund and Gothenburg \n\n\n\nQuestions regarding the course? Send them to: cecilia.persson@nmr.gu.se. \n\n\n\napply here!\n\n\n\nThis course guides you through the different available techniques within structural biology at infrastructures in Sweden. We will also guide all participants through Sweden\, showcasing several of the infrastructures. In short\, the following techniques will be addressed: \n\n\n\n\nCryo-EM\n\n\n\nNMR\n\n\n\nStructural proteomics\n\n\n\nCrystallography\n\n\n\nSAXS/SANS\n\n\n\nBiophysical characterization\n\n\n\nComputational aspects including AlphaFold\n\n\n\nProtein production\n\n\n\nStudent presentations\n\n\n\nSite visits\n\n\n\n\nThe course will start with 4 days in Stockholm and then finish the first week in Linköping. Second week starts in Lund and finishes with two days in Gothenburg. \n\n\n\nYou can download the course overview here: \n\n\n\n Preliminary schedule pdf. \n\n\n\nThere is a course fee for academic participants of 6000 SEK that includes lodging (4 nights each week)\, meals all days and travel between sites. Industry and healthcare participants are welcome for full or specific day participation. Contact Cecilia for more information about costs depending on degree of participation. Industry also welcome to sponsor part of the event and get exposure and networking possibility. \n\n\n\nTravels between sites will be organized for all as well as lodging and lunch/fika. Participants are asked to arrange their own travels to Stockholm on September 2 (arrival latest at 10)\, from Linköping on September 6\, travel to Lund (arrival September 9 before lunch) and then again final travel home on September 13. \n\n\n\nImportant dates\n\n\n\nThere are still some places left in the course and we have prolonged the last application date so you can apply until June 20\, and we will let you know shortly after if you have secured a place in the course \n\n\n\n \n\n\n\nTeachers\n\n\n\n\nMartin Moche\n\n\n\nTomas Nyman\n\n\n\nEsko Oksanen\n\n\n\nTim Schulte\n\n\n\nMichael Hall\n\n\n\nHanna Barriga\n\n\n\nDean Derbyshire\n\n\n\nMaria Sunnerhagen\n\n\n\nSimon Ekström\n\n\n\nLotta Happonen\n\n\n\nCaludio Mirabello\n\n\n\nWojciech Potrzebowski URL:https://www.scilifelab.se/event/integrated-structural-biology-course-2024/ LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden CATEGORIES:Course ORGANIZER;CN="Integrated Structural Biology Platform at SciLifeLab":MAILTO:cecilia.persson@nmr.gu.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20240902T151500 DTEND;TZID=Europe/Stockholm:20240902T161500 DTSTAMP:20260404T234332 CREATED:20240819T072902Z LAST-MODIFIED:20240819T160502Z UID:10001308-1725290100-1725293700@www.scilifelab.se SUMMARY:[The Svedberg seminar] - The Genomic War Between the Sexes DESCRIPTION:Mark A KirkpatrickProfessorUniversity of Texas\, USA \n\n\n\n \n\n\n\n \n\n\n\n \n\n\n\n\n\n\n\nBio\n\n\n\nMark received an undergraduate degree at Harvard and Ph.D. at the University of Washington with Monty Slatkin.  Following a Miller Fellowship at Berkeley\, he took a post at the University of Texas and has remained there since.  Mark was elected as Fellow of the American Association of Arts and Sciences in 2008 and Member of the National Academy of Sciences in 2020. \n\n\n\n \n\n\n\nThe Genomic War Between the Sexes\n\n\n\nSexually antagonistic selection (SAS)\, which occurs when different alleles are favored in females and males.  While SAS is key to many key evolutionary processes\, its prevalence in the genome is largely unknown.  We use a new method to show that SAS acts on a very large number of sites across the human genome.  It contributes to human mortality\, and involves tradeoffs between survival and fecundity that work in converse ways in females and males.  In nonhuman animals\, SAS may be important to determining the sex ratio\, and to the origin and subsequent evolution of sex chromosomes. \n\n\n\nRead more: https://kirkpatricklab.org/ \n\n\n\n \n\n\n\n \n\n\n\n\n\n\n\nHost: Leif Andersson leif.andersson@imbim.uu.se URL:https://www.scilifelab.se/event/the-svedberg-seminar-mark-kirkpatrick/ LOCATION:BMC Room C4:301\, Husargatan 3\, entrance C1\, Uppsala\, Sweden CATEGORIES:Event ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/02/Picture1-The-Svedberg.png END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20240903T120000 DTEND;TZID=Europe/Stockholm:20240903T170000 DTSTAMP:20260404T234332 CREATED:20240326T150717Z LAST-MODIFIED:20240828T141641Z UID:10001217-1725364800-1725382800@www.scilifelab.se SUMMARY:Clinical Genomics Uppsala - Celebrating 10 years of translational research  DESCRIPTION:Clinical Genomics Uppsala invites you to a half-day symposium to celebrate 10 years of translational research – Past achievements and future opportunities in precision medicine \n\n\n\nPlease join us for: \n\n\n\n\nPresentations of projects carried out at Clinical Genomics Uppsala and their clinical implications\n\n\n\n\n\nDiscussion on the present and future of precision medicine and diagnostics\n\n\n\n\n\nMeet old and new friends during a light lunch\, coffee break and mingle celebration\n\n\n\n\n\n\n\n\nWelcome! \n\n\n\nRegistration\n\n\n\nRegistration has closed! \n\n\n\nIn the unfortunate case that you need to cancel\, please email events(at)scilifelab.se as soon as possible to avoid food waste and enable someone else to attend. \n\n\n\n\n\n\n\nProgram\n\n\n\n12:00Lunch and mingle outside the Rudbeck hall (Lennart Nilsson hall)13:00Welcome – Malin Melin and Panagiotis Baliakas\, CGU13:10Clinical Genomics and Genomic Medicine Sweden – Richard Rosenquist Brandell\, KI and Lucia Cavelier\, KI13:30Comprehensive genomic profiling in endocrine tumors – Joakim Crona\, UU13:45Genetic changes over disease progression in mantle cell lymphoma – how can this help us treat patients better? – Ingrid Glimelius\, UU14:00Molecular prognostication of myelodysplastic syndromes – Eva Hellström Lindberg\, KI14:15Diagnostics during the pandemic – Johan Lindh\, UU14:30Coffee Break15:00Immune profiling in cancer patients treated with LOAd703\, an immunostimulatory adenoviral genetherapy – Tanja Lövgren\, UU15:15Novel approaches for ultrasensitive variant detection- Ulf Landegren\, UU15:30Polygenetic risk scores in familial breast cancer – Daniel Eriksson\, UU15:45Future precision diagnostics in hematological cancers – Panagiotis Baliakas\, UU16:00Panel discussion on the future of precision medicine/precision diagnostics(Panel: Lucia Cavelier\, Richard Rosenquist Brandell\, Panagiotis Baliakas\, Eva Tiensuu Janson\, Björn Arvidsson)16:30Concluding remarks16:40Mingle outside the Rudbeck hall (Lennart Nilsson hall) URL:https://www.scilifelab.se/event/clinical-genomics-uppsala-celebrating-10-years-of-translational-research/ LOCATION:Rudbecksalen\, Rudbecklaboratoriet\, Dag Hammarskjöldsväg 20\, Uppsala\, 75237 CATEGORIES:Event ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2024/03/Hemsida-Rudbeck-frontbild.jpeg ORGANIZER;CN="Clinical Genomics Uppsala":MAILTO:clinicalgenomicsuppsala@scilifelab.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20240905T120000 DTEND;TZID=Europe/Stockholm:20240905T130000 DTSTAMP:20260404T234332 CREATED:20240708T135457Z LAST-MODIFIED:20240820T110522Z UID:10001294-1725537600-1725541200@www.scilifelab.se SUMMARY:Campus Solna Seminar Series: Solène Frapard & Hower Lee DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 20 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nPhD students that are attending the Campus Solna Seminar lectures will have the opportunity to gain credits. For the syllabus and instructions on how to obtain these credits\, read this document. Please contact your own department at your host University to confirm.See here the full schedule for this semester. \n\n\n\nThis week:\n\n\n\n\n\n\nSolène Frapard\n\n\n\nStefania Giacomello – alpha 3 \n\n\n\nUnderstanding the impact of spaceflight on mouse brain using spatial multiomics methods \n\n\n\n\n\nHower Lee\n\n\n\nMats Nilsson – gamma 4 \n\n\n\nNext generation targeted in situ sequencing \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page. URL:https://www.scilifelab.se/event/campus-solna-seminar-series-solene-frapard-hower-lee/ LOCATION:Milkyway SciLifeLab Solna\, Tomtebodavägen 23\, Solna CATEGORIES:Community ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/09/IMG_20221103_124630107_HDR-scaled.jpg ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20240909T151500 DTEND;TZID=Europe/Stockholm:20240909T161500 DTSTAMP:20260404T234332 CREATED:20240827T151248Z LAST-MODIFIED:20240827T151324Z UID:10001339-1725894900-1725898500@www.scilifelab.se SUMMARY:[The Svedberg seminar] - Designing brighter dyes for advanced fluorescence microscopy and beyond DESCRIPTION:Luke D. LavisHead of Molecular Tools and ImagingHoward Hughes Medical Institute\, USA \n\n\n\n \n\n\n\n \n\n\n\n \n\n\n\n\n\n\n\nBio\n\n\n\nLuke D. Lavis received his B.S. in Chemistry from Oregon State University in 2000 and his Ph.D. in Organic Chemistry from the University of Wisconsin–Madison in 2008. Circumventing a traditional postdoc\, he than began his independent career as a Group Leader at the Howard Hughes Medical Institute’s Janelia Research Campus\, and was promoted to Senior Group Leader and Head of Molecular Tools and Imaging in 2017. His research focuses on designing small-molecule tools for imaging\, leading to the development of the widely used Janelia Fluor® dyes and the founding of Eikon Therapeutics in 2019. \n\n\n\n \n\n\n\nDesigning brighter dyes for advanced fluorescence microscopy and beyond\n\n\n\nSpecific labeling of biomolecules with bright\, photostable fluorophores is the keystone of fluorescence microscopy. An established method to label cellular components utilizes genetically encoded self-labeling tags\, which enable the attachment of chemical fluorophores to specific proteins inside living cells. For the last decade\, our laboratory has focused on the development of improved fluorophores for use in living systems. We discovered a simple structural modification to classic fluorophores—incorporation of a four-membered azetidine ring—that substantially improves quantum efficiency and photostability. This strategy is generalizable to fluorophores from different structural classes and has yielded a palette of optimized chemical dyes for use in advanced microscopy experiments ranging from single-molecule tracking in individual cells to population voltage imaging in vivo. \n\n\n\n \n\n\n\n \n\n\n\n \n\n\n\n\n\n\n\nHost: Daniel Fürth furth@scilifelab.uu.se URL:https://www.scilifelab.se/event/the-svedberg-seminar-luke-lavis/ LOCATION:BMC Room C8:301\, Husargatan 3\, Uppsala\, Sweden CATEGORIES:Event ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/02/Picture1-The-Svedberg.png END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20240910T151500 DTEND;TZID=Europe/Stockholm:20240910T160000 DTSTAMP:20260404T234332 CREATED:20240902T072833Z LAST-MODIFIED:20240902T074501Z UID:10001343-1725981300-1725984000@www.scilifelab.se SUMMARY:[Spotlight seminar] - Designing brighter dyes for advanced fluorescence microscopy and beyond DESCRIPTION:Dr. Luke D. Lavis\, Howard Hughes Medical Institute\, USA  \n\n\n\nBiography\n\n\n\n Luke D. Lavis received his B.S. in Chemistry from Oregon State University in 2000 and his Ph.D. in Organic Chemistry from the University of Wisconsin–Madison in 2008. Circumventing a traditional postdoc\, he than began his independent career as a Group Leader at the Howard Hughes Medical Institute’s Janelia Research Campus\, and was promoted to Senior Group Leader and Head of Molecular Tools and Imaging in 2017. His research focuses on designing small-molecule tools for imaging\, leading to the development of the widely used Janelia Fluor® dyes and the founding of Eikon Therapeutics in 2019. \n\n\n\nAbstract\n\n\n\nSpecific labeling of biomolecules with bright\, photostable fluorophores is the keystone of fluorescence microscopy. An established method to label cellular components utilizes genetically encoded self-labeling tags\, which enable the attachment of chemical fluorophores to specific proteins inside living cells. For the last decade\, our laboratory has focused on the development of improved fluorophores for use in living systems. We discovered a simple structural modification to classic fluorophores—incorporation of a four-membered azetidine ring—that substantially improves quantum efficiency and photostability. This strategy is generalizable to fluorophores from different structural classes and has yielded a palette of optimized chemical dyes for use in advanced microscopy experiments ranging from single-molecule tracking in individual cells to population voltage imaging in vivo. \n\n\n\nHost: Simon Elsässer\, KI\, simon.elsasser@scilifelab.se URL:https://www.scilifelab.se/event/spotlight-seminar-designing-brighter-dyes-for-advanced-fluorescence-microscopy-and-beyond/ LOCATION:Gamma 2 Lunchroom\, SciLifeLab\, Tomtebodavägen 23\, Solna\, Sweden CATEGORIES:Event ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2023/10/Campus-solna-seminar-picture.jpg ORGANIZER;CN="SciLifeLab Event":MAILTO:events@scilifelab.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20240911T090000 DTEND;TZID=Europe/Stockholm:20240912T123000 DTSTAMP:20260404T234332 CREATED:20240319T140810Z LAST-MODIFIED:20240906T133615Z UID:10001210-1726045200-1726144200@www.scilifelab.se SUMMARY:Linköping Ion Channel Meeting DESCRIPTION:Welcome to the first Linköping Ion Channel Meeting \n\n\n\nLinköping University hosts some of Sweden’s most successful ion-channel investigators and the national high-throughput electrophysiology core facility. To celebrate our passion for cutting-edge ion-channel research\, we are together with Sophion Biosciences A/S and SciLifeLab launching Linköping Ion Channel Meeting.  \n\n\n\nWe have gathered a line-up of distinguished academic speakers from Europe for a two-day meeting. We will delve into electrophysiology\, with a focus on ion channels. The meeting will also offer room for discussions and connecting with familiar and new colleagues. \n\n\n\n \n\n\n\nVenue: Hugo Theorell salen\, Hus 440\, Plan 9. University Hospital Campus\, Linköping University. Link Maze map \n\n\n\nOrganizing committee \n\n\n\n\nFredrik Elinder\, Linköping University\, SciLifeLab Linköping\n\n\n\nNina Ottosson\, Linköping University\, SciLifeLab Linköping\n\n\n\nJosefine Sandström\, Linköping University\, SciLifeLab Linköping\n\n\n\nAntonios Pantazis\, Linköping University\n\n\n\nDuncan Jarman\, Sophion Bioscience\n\n\n\nRafael Nisenbaum\, Sophion Bioscience\n\n\n\n\nInvited Speakers\n\n\n\n\nAlicia Lundby\, Copenhagen University\, Denmark\n\n\n\nAnna Moroni\, University of Milan\, Italy\n\n\n\nBo Bentzen\, Copenhagen University\, Denmark\n\n\n\nEric Lindahl\, Stockholm University\, Sweden\n\n\n\nKirstine Calloe\, Rigshospitalet\, Denmark\n\n\n\nKlaus Benndorf\, University Hospital Jena\, Germany\n\n\n\nMarta Campiglio\, Innsbruck University\, Austria\n\n\n\nMichael Pusch\, Institute of Biophysics\, CNR\, Genoa\, Italy\n\n\n\nPeter Larsson\, Linköping University\, Sweden\n\n\n\nPeter McNaughton\, King’s College London\, United Kingdom\n\n\n\nRalf Hausmann\, Aachen University\, Germany\n\n\n\nSara Liin\, Linköping University\, Sweden\n\n\n\nThomas Jepps\, Copenhagen University\, Denmark\n\n\n\nThomas Voets\, KU Leuven\, Belgium\n\n\n\nTimothy Lynagh\, University of Bergen\, Norway\n\n\n\nWilliam Brackenbury\, University of York\, United Kingdom\n\n\n\n\nRegistration\n\n\n\nRegistration deadline is August 27\, 2024\, at 12 am. No daily or partial registration fee is available. \n\n\n\nRegistration fee 1500 SEK. The participant adds the invoice address to the online registration form. \n\n\n\nRegister here\n\n\n\nProgram\n\n\n\nAgenda LICM 2024-08-30 (final)Download\n\n\n\nAccommodation\n\n\n\nWe recommend Quality Hotel Ekoxen. A five-minute walking distance from meeting location Map to Quality Hotel Ekoxen \n\n\n\nUse this link when booking Quality Hotel Ekoxen. \n\n\n\nHotel Slottsparken and Elite Stora Hotellet are two other great options for accommodation. \n\n\n\nMeals\n\n\n\nThe registration fee includes two lunches\, regular coffee breaks\, and a three-course dinner. Allergies and dietary requests are added by participants and invited speakers in the registration form. Dinner location \n\n\n\nPoster information\n\n\n\nParticipants are encouraged to present posters. The recommended poster format is Portrait with a maximum width of 78 cm. A scientific committee will suggest some selected posters for oral presentations. \n\n\n\nImportant! To be considered for an oral presentation\, submit Poster information\, including title and abstract\, before August 9. The deadline for poster registration is August 27. The information will be added to a meeting booklet. \n\n\n\nPoster submission URL:https://www.scilifelab.se/event/linkoping-ion-channel-meeting/ LOCATION:University Hospital Campus\, Linköping University\, Universitetssjukhuset\, Linköping\, 581 85\, Sweden CATEGORIES:Event ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2024/04/Ovre-banner-med-loggor-i-vitt.jpg ORGANIZER;CN="SciLifeLab Link%C3%B6ping":MAILTO:linkoping@scilifelab.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20240912T090000 DTEND;TZID=Europe/Stockholm:20240912T170000 DTSTAMP:20260404T234332 CREATED:20240529T094337Z LAST-MODIFIED:20240912T065628Z UID:10001266-1726131600-1726160400@www.scilifelab.se SUMMARY:SciLifeLab Campus Solna Science Talks 2024 DESCRIPTION:We would like to warmly welcome you to take part in this year’s Campus Solna Science Talks symposium on September 12th – a meeting for everyone in the community to learn more about ongoing research and activities at SciLifeLab’s Campus Solna\, which aims to bring the community together\, inspire exchange and new collaborations. \n\n\n\nregister today\n\n\n\nResearch presentations will be given by group leaders and junior researchers (selected with consideration for balance in topics\, presenters’ career stages\, and affiliations) as part of four plenary sessions that will be mixed with poster sessions\, panel discussions and a few surprises. \n\n\n\nWe invite all Campus Solna research groups to be represented with at least 1 poster (and maximum 3). Furthermore\, we want to encourage all infrastructure units\, support functions (IT\, OO\, Site support) and committees (DEI\, Public Engagement\, CSI and the PhD&Postdoc Council) to partake with posters! \n\n\n\nProgram\n08:30Arrival\, registration and coffeeLife City\, Solnavägen 3H09:00Welcome and opening of symposiumPer Ljungdahl and Jan Ellenberg09.15Session 1: Immunology in health and diseaseChair: Adnane Achour09.20Using a cell-type centric approach for vascular disease risk profilingLynn Butler 09.35Characterization of NK cell receptor orchestration at the immunological synapsePatrick Ross09.50Towards computationally-optimised immunotherapyLuca Panconi10.05Session wrap-up10:10Coffee\, Speakers’ corner & Poster session10:50Session 2: Tackling cancer: From omics data over system models to drug designChair: María Bueno Alvez10.55Spatial VDJ and immune response in cancer Kim Thrane11.10Deep learning models of cancer mechanismsAvlant Nilsson11.25Protein structure prediction\, interactions\, and universal binder designPatrick Bryant11.40Session wrap-up11.45Leg stretch11:50Panel discussion: Science beyond impact factorModerators: Niclas Jareborg & Isolde PalomboPanelists: Annika Jenmalm Jensen\, Ylva Engström\, Andrea Fossati\, Anniina Vihervaara12:20Lunch\, Speakers’ corner & Poster session13.40Session 3: Environmental impacts on molecular systemsChair: Bénilde Bonnefille13.45Metabolic versatility and switch mechanisms of sulfur bacteria in oxygen minimum zones of Baltic Sea\, Saravana Kumar14.00Epigenetic Transgenerational Effects of Environmental Pollution: Assessing the Impact of the Herbicide Linuron on Xenopus tropicalis FrogsMauricio Roza14.15Chemical Exposomics in a Longitudinal Swedish Wellness Cohort (S3WP)Kalliroi Sdougkou14.30Session wrap-up14.35Coffee\, Speakers’ corner & Poster session15.05Session 4: Mining\, molecular profiling and analysesChair: Olena Berkovska15:10Charting the human immune landscape across development and diseaseBurcu Ayoğlu15.25Mining for novel microproteins involved in tumor epithelial-mesenchymal balanceAlberto M. Arenas Molina15.40A human pan-disease blood atlas based on next generation blood profilingMaria Bueno Alvez15.55Session wrap-up16.00Leg stretch and poster demounting16.10Panel discussion: Campus Solna future Directions and Collaborative Opportunities Moderators: Iskra Pollak Dorocic & Per LjungdahlPanelists: Claudia Fredolini\, Jessica Lindvall\, Patrick Bryant\, Eva Brinkman\, Carsten Daub16.45Concluding remarksPer Ljungdahl17.00Pub at Campus Solna\n\n\n\n\nPosters\nEach group/unit is welcome to bring up to 3 posters to the grand Poster Session that will follow the talks. Submit the poster titles in the registration form. Please coordinate within your research group/unit beforehand who should bring a poster. \n\n\n\nPlease add your building and floor to the poster\, so that everyone knows where your research is taking place. \n\n\n\nPoster size; A0 or smaller \n\n\n\nPoster list Science Talks 2024Download\n\n\n\n\nBreak activities\nRoomOrganiserDescriptionFutureCoaching in Science InitiativeRelax and Recharge – Guided Meditation Sessions with the Coaching in Science InitiativeWarmly welcome to visit the Coaching in Science Initiative (CSI). Here\, we will provide a break and an opportunity to relax. Join us for a guided meditation\, body scan with nature sounds\, and other relaxation techniques. In the future\, we are exploring arranging weekly such events at SciLifeLab in Solna.CreativePhD and postdoc council at Campus SolnaFrom SciLifeLab for SciLifeLabMeet and discuss with the members of the PhD and postdoc council about ongoing initiatives\, challenges at Campus Solna and your ideas for a better community!EvolutionSciLifeLab Events and CommunicationShowcasing the Beauty of Science – Art at Campus SolnaAt SciLifeLab’s Solna campus\, we’re discovering that science and art aren’t as different as they might seem. Our researchers\, who are dedicated to advancing knowledge\, often create stunning visual art through their scientific work. These images\, rooted in research\, showcase the inherent beauty in scientific discovery\n\n\n\n\nScientific Committee\nThis event has been made possible through the hard work of the Scientific committee. \n\n\n\nScientific Committee \n\n\n\n\nAdnane Achour\n\n\n\nMarcel Tarbier\n\n\n\nIskra Pollack Dorocic\n\n\n\nHaris Babacic\n\n\n\nPer Ljungdahl\n\n\n\n\nOperations Office representatives \n\n\n\n\nIsolde Palombo\n\n\n\nDisa Larsson Hammarlöf URL:https://www.scilifelab.se/event/scilifelab-campus-solna-science-talks-2024/ LOCATION:Life City\, Solnavägen 3H\, Stockholm\, 113 64 CATEGORIES:Community ORGANIZER;CN="SciLifeLab Event":MAILTO:events@scilifelab.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20240916T080000 DTEND;TZID=Europe/Stockholm:20240920T170000 DTSTAMP:20260404T234332 CREATED:20240426T103029Z LAST-MODIFIED:20240426T103031Z UID:10001243-1726473600-1726851600@www.scilifelab.se SUMMARY:Epigenomics Data Analysis: from Bulk to Single Cell – ONLINE DESCRIPTION:National course open for PhD students\, postdocs\, researchers and other employees in all Swedish universities\, in need of  Epigenomics data analysis skills. We also welcome applications from outside of Sweden and from the non-academic sector\, for more info contact us! \n\n\n\nImportant dates and information\n\n\n\nApplication opens: 2024-04-26 \n\n\n\nApplication closes: 2024-08-28 \n\n\n\nConfirmation to accepted students: 2024-08-30 \n\n\n\nCourse Leaders : Agata Smialowska and Louella Vasquez \n\n\n\nContact information:  edu.epigenomics@nbis.se \n\n\n\nCourse fee\n\n\n\nThis online training event has no fee for academic participants. However\, if you accept a position at the workshop and do not participate (no-show) you will be invoiced 2 000 SEK. For non-academic participants a course fee* of 12 000 SEK  will be invoiced. \n\n\n\n*Please note that NBIS cannot invoice individuals \n\n\n\nCourse content\n\n\n\nThis workshop aims to introduce the best practice bioinformatics methods for processing\, analyses\, visualisation and integration of epigenomics and functional genomics data. \n\n\n\nTopics covered include: \n\n\n\n\nData processing and analyses for differential DNA methylation with Illumina EPIC arrays and Bisulfite-seq;\n\n\n\nChIP-seq: peak calling\, peak independent / dependent quality metrics\, differential binding analysis; DNA motif enrichment;\n\n\n\nATAC-seq: peak calling\, peak independent / dependent quality metrics\, differential accessibility analysis;\n\n\n\nQuantitative ChIP-seq using spike-ins;\n\n\n\nCUT&Tag / CUT&RUN: Novel methods to investigate protein-chromatin interactions;\n\n\n\nFunctional analysis\, including finding nearest genes and custom features\, GO terms and Reactome pathways enrichment;\n\n\n\nBasic multi-omics exploration and integration;\n\n\n\nVisualisations of epigenomics datasets;\n\n\n\nIntroduction to analysis of single cell functional genomics data (scATAC-seq);\n\n\n\nIntroduction to nf-core pipelines for processing and analysis of epi- and functional genomics data : Methylseq\, ChIP-seq\, ATAC-seq.\n\n\n\n\nEntry requirements\n\n\n\nRequired for being able to follow the workshop and complete the computer exercises: \n\n\n\n\nBYOL\, bring your own laptop with R and RStudio installed;\n\n\n\nBasic knowledge in Linux;\n\n\n\nBasic programming experience\, preferably in R.\n\n\n\n\nDesirable: \n\n\n\n\nExperience working on the SNIC center Uppmax or another HPC. We encourage participants to run the linked Uppmax tutorial before the workshop;\n\n\n\nPrevious experience with NGS data analyses;\n\n\n\nCompleting NBIS workshops “Introduction to Bioinformatics using NGS data” and “R Foundations for Life Scientists” or equivalent.\n\n\n\n\nDue to limited space the course can accommodate a maximum of 25 participants. If we receive more applications\, participants will be selected based on selection criteria\, including (but not limited to) correct entry requirements\, motivation to attend the course\, as well as gender and geographical balance. \n\n\n\nLink to application\n\n\n\nhttps://forms.gle/BbmWmLwZFS1ed8EeA URL:https://www.scilifelab.se/event/epigenomics-data-analysis-from-bulk-to-single-cell-online-4/ LOCATION:Online event via Zoom CATEGORIES:Course ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20240917T080000 DTEND;TZID=Europe/Stockholm:20240918T170000 DTSTAMP:20260404T234332 CREATED:20240125T124358Z LAST-MODIFIED:20240916T140626Z UID:10001124-1726560000-1726678800@www.scilifelab.se SUMMARY:Planetary Biology 2024 Conference - Linking molecules to ecosystems DESCRIPTION:The Planetary Biology Capability at SciLifeLab is pleased to announce its first conference and all-hands meeting on the theme “Linking molecules to ecosystems”. This event aims to integrate molecular and ecosystem-level research\, fostering interdisciplinary collaboration in planetary biology. \n\n\n\nThis two-day conference targets researchers addressing the pressing environmental\, climate\, and biodiversity challenges facing our planet today and will feature a diverse program\, including inspirational talks\, poster presentations\, and interactive sessions. Participants will have the chance to pitch project ideas and explore potential collaborations\, emphasizing cross-scale methodological approaches to advance our understanding of ecosystem interactions and functions. \n\n\n\nJoin us in Gothenburg in September! \n\n\n\nRegister Here!\n\n\n\nInteractive sessions\n\n\n\n\nFoster opportunities to develop collaborations. We encourage you to present a short (2-minute max) project idea pitch explaining where you see opportunities for collaboration to bridge the molecular and ecosystem scales.\n\n\n\nOvercome challenges in applying new technologies and cross-scale approaches to span from molecules to ecosystems. Are you intending to apply cutting-edge technologies to your research but find it challenging? Are there technical or methodological problems you need to solve? Let us know in the registration form so we can involve experts working on the 10 technology platforms at SciLifelab.\n\n\n\n\nProgramme\n\n\n\nPB Conference programme_Download\n\n\n\nBooklet\n\n\n\nPBconference_2024-FULLBooklet_Download URL:https://www.scilifelab.se/event/planetary-biology-2024-conference-linking-molecules-to-ecosystems/ LOCATION:Conference Centre Wallenberg\, Medicinaregatan 20A\, Gothenburg\, 413 90\, Sweden CATEGORIES:Event ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2024/01/PB-conference_-PBwebsite_deadlines_crop2.png ORGANIZER;CN="SciLifeLab Planetary Biology Strategic Area":MAILTO:anabella.aguilera@scilifelab.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20240918T080000 DTEND;TZID=Europe/Stockholm:20240919T170000 DTSTAMP:20260404T234332 CREATED:20240411T132838Z LAST-MODIFIED:20240603T163446Z UID:10001229-1726646400-1726765200@www.scilifelab.se SUMMARY:Training Material made FAIR by Design DESCRIPTION:This 2 day course is based on the FAIR training handbook and 10 simple rules to make material FAIR publication. All sessions are structured in a way that complement each other aiming to introduce participants with a theoretical & hands-on approach of how to design FAIR training material. \n\n\n\nPlease see the course website\, which will be updated regularly\, for more information \n\n\n\n \n\n\n\nTopics covered will include:\n\n\n\n\nFAIR vs OPEN training material\n\n\n\nTraining material documentation and reproducibility \n\n\n\n(ontology\, Learning Outcomes\,etc)\n\n\n\nIllustrations\, keeping it FAIR\n\n\n\nE-learning and videos\, challenges and solutions to keep it FAIR\n\n\n\nUnique identifiers and version control\n\n\n\n\nActivities are intended to increase the technical skills and critical thinking during the development of a new training course. From A to Z participants are going to be challenged to work in a group to build a FAIR lesson on a topic to be presented at the end of the course. Come inspired! \n\n\n\nImportant Dates\n\n\n\nApplication open: 11-April-2024Application closes: 23-August-2024 \n\n\n\nConfirmation to applicants 30-August-2024 \n\n\n\nRegistration\n\n\n\nCourse website\n\n\n\nNote: The course is highly interactive and hence it is important that you\, as a participant\, actively contribute to all sessions and elements of the course.  \n\n\n\nParticipants need to bring a laptop.There are no fees for this course. \n\n\n\nAll are welcome! Particularly interesting for trainers and instructors that design-develop-deliver short-format training. \n\n\n\nLearning Objectives\n\n\n\nUpon completion of this course\, you will be able to: \n\n\n\n\ncreate FAIR and open training material from the start\n\n\n\napply FAIR principles to all elements of training material\n\n\n\nuse AI tools in content creation of FAIR training material\n\n\n\n\nPrerequisites\n\n\n\nThe following is a list of skills required for being able to follow the course and complete the exercises: \n\n\n\n\nBe familiar with GitHub If not\, we advise you to have a look at the GitHub Skills pages and/or Github courses in Glittr.org in order to acquire the following:\n\nBasic knowledge: To be able to make commits\, create branches and issues\, make pull requests.\n\n\n\n\n\nDesirable\, but not essential skills increasing the output of the course include:\n\nPre-reading the FAIR Training Handbook\n\n\n\nPre-reading 10 simple rules to make material FAIR publication URL:https://www.scilifelab.se/event/fair-training-material-by-design/ LOCATION:Navet\, SciLifeLab Uppsala\, SciLifeLab Uppsala\, BMC C11\, Husargatan 3\, Uppsala\, 75237\, Sweden CATEGORIES:Course ORGANIZER;CN="SciLifeLab Training Hub%2C NBIS%2C and VIB":MAILTO:traininghub@scilifelab.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20240918T151500 DTEND;TZID=Europe/Stockholm:20240918T161500 DTSTAMP:20260404T234332 CREATED:20240829T065531Z LAST-MODIFIED:20240829T065536Z UID:10001340-1726672500-1726676100@www.scilifelab.se SUMMARY:[The Svedberg seminar] - Leveraging innate immunity against epidemic and pandemic viruses DESCRIPTION:Michael GaleProfessorThe University of Washington School of Medicine\, USA \n\n\n\n \n\n\n\n \n\n\n\n \n\n\n\n\n\n\n\nBio\n\n\n\nDr. Gale’s research program is focused on understanding the virus-host interactions that regulate innate immunity against virus infection. His group studies SARS-CoV-2\, CoVs\, HIV\, SIV\, hepatitis B virus\, hepatitis C virus\, influenza A virus\, hantaviruses\, West Nile virus\, Zika virus\, Dengue virus\, and other RNA viruses\, aiming to define the processes of virus recognition by the infected cell\, and how viruses control of innate immunity and immune programming to direct infection outcome. A major goal of the Gale laboratory is to define therapeutic targets to enhance immunity and vaccination outcomes against virus infection. Dr. Gale is a Principle Investigator (PI) of UWARN\, one of the NIH Centers for Research on Emerging Infectious Disease (CREID)\, and he also leads the NIH/DAIDS Nonhuman Primate Functional Genomics Core for HIV Vaccine Development. His group conducts functional genomics analyses of virus infection including assessment of preclinical HIV/SIV vaccines being tested in NIH-supported studies. These activities include bioinformatics/computational analyses of infection and vaccine responses and their linkage with mechanisms of action and disease or protection outcomes. Gale lab research is among the top 1% cited worldwide in the field of Microbiology since 2014. Dr. Gale teaches virology\, immunology\, infectious disease biology\, and public health to medical students and graduate students\, and is a member of the editorial board of several biomedical research journals. \n\n\n\nIn October 2024 Dr. Gale will relocate his lab to the University of Minnesota (UM) School of Medicine where he will be the Chair of the Department of Microbiology and Immunology\, and Director of the Institute on Infectious Disease. Contact: mgale@umn.edu \n\n\n\n \n\n\n\nLeveraging innate immunity against epidemic and pandemic viruses\n\n\n\nInnate immune defenses are essential for restricting virus replication and for programming the adaptive immune response against infection. Our studies are focused on defining the innate immune response to emerging viruses.  We have ongoing studies to define pathogen recognition receptor interactions and signaling events triggered by viral pathogen associated molecular patterns (PAMPs) across viral genera that drive innate antiviral immunity and program/enhance the adaptive immune response against infection\, with special focus on neuroinvasive flaviviruses\, SARS-CoV-2\, HIV\, and influenza A virus. We aim to translate our findings to build strategies for antiviral therapy and immune enhancement. This work has defined the RIG-I-like receptors\, including RIG-I\, MDA5\, and LGP2\, as critical factors in the recognition of RNA virus infection and immune protection against disease. We have identified distinct PAMP/RLR interactions that serve to program the outcome of infection and immunity. An overview of our emerging virus research program\, including SARS-CoV-2\, will be presented\, followed by an in-depth presentation of our work to define Zika virus infection\, immunity\, and disease. \n\n\n\n \n\n\n\n \n\n\n\n \n\n\n\n\n\n\n\nHost: Jan Komorowski jan.komorowski@icm.uu.se URL:https://www.scilifelab.se/event/the-svedberg-seminar-michael-gale/ LOCATION:BMC Room C8:301\, Husargatan 3\, Uppsala\, Sweden CATEGORIES:Event ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/02/Picture1-The-Svedberg.png END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20240919T120000 DTEND;TZID=Europe/Stockholm:20240919T130000 DTSTAMP:20260404T234332 CREATED:20240708T135643Z LAST-MODIFIED:20240826T154057Z UID:10001295-1726747200-1726750800@www.scilifelab.se SUMMARY:Campus Solna Seminar Series: Simin Zhang & Adrià Sunyer DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 20 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nPhD students that are attending the Campus Solna Seminar lectures will have the opportunity to gain credits. For the syllabus and instructions on how to obtain these credits\, read this document. Please contact your own department at your host University to confirm.See here the full schedule for this semester. \n\n\n\nThis week:\n\n\n\n\n\n\nSimin Zhang\n\n\n\nSean Rudd – alpha 5 \n\n\n\nTailor antiviral therapy by targeting host nucleotide metabolism \n\n\n\n\n\nAdrià Sunyer\n\n\n\nJonathan Martin – gamma 5 \n\n\n\n \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page. URL:https://www.scilifelab.se/event/campus-solna-seminar-series-si-min-zhang-adria-sunyer/ LOCATION:Milkyway SciLifeLab Solna\, Tomtebodavägen 23\, Solna CATEGORIES:Community ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/09/IMG_20221103_120135408_HDR-scaled.jpg ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20240920T100000 DTEND;TZID=Europe/Stockholm:20240920T110000 DTSTAMP:20260404T234332 CREATED:20240815T085241Z LAST-MODIFIED:20240909T135631Z UID:10001322-1726826400-1726830000@www.scilifelab.se SUMMARY:Variational inference for tumor phylogeny using single cell data DESCRIPTION:Harald Melin\, KTH Royal institute of Technology \n\n\n\nMCMC has long been the gold standard for Bayesian inference in classical phylogenetics\, instantiated e.g. in popular softwares such as MrBayes and BEAST. This presentation focuses on an alternative Bayesian approach\, Variational Inference (VI)\, which has made recent advances in fields of classical and tumor phylogenetics. I will give an introduction to the method and how it is applied in classical phylogeny\, emphasising its strengths and limitations w.r.t. MCMC\, followed by how it facilitates Bayesian inference of copy number evolution in tumors using low coverage single cell whole-genome sequencing data\, based on our recent project VICTree. \n\n\n\n— \n\n\n\nNBIS arranges an open AI and IO Seminar Series aimed at knowledge-sharing about Artificial Intelligence and Integrative Omics (AI & IO) analysis and applications in the Life Science community. The seminar series is open to everyone. The seminar is run over Zoom on the third Friday of the month during academic terms\, typically between 10 and 11 am\, with approx. 45 min long presentation and 15 min discussion.  URL:https://www.scilifelab.se/event/variational-inference/ LOCATION:Online event via Zoom CATEGORIES:Event END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20240920T130000 DTEND;TZID=Europe/Stockholm:20240920T140000 DTSTAMP:20260404T234332 CREATED:20240902T120600Z LAST-MODIFIED:20240902T120933Z UID:10001344-1726837200-1726840800@www.scilifelab.se SUMMARY:How does epigenetic mechanism impact Type 2 diabetes? DESCRIPTION:Speaker: Dr. Charlotte Ling is a Professor at Lund University \n\n\n\nDr. Charlotte Ling is a Professor at Lund University and a principal investigator of the Epigenetics and Diabetes Unit at Lund University Diabetes Centre (LUDC). She obtained her PhD in Endocrinology at University of Gothenburg\, Sweden in 2002. After a postdoc at Lund University\, where she studied genetics of type 2 diabetes\, she dedicated her research to the study of epigenetic mechanisms causing type 2 diabetes and metabolic disease. Her research group has over the last two decades pioneered the field of epigenetics in type 2 diabetes. They have made several groundbreaking discoveries such as genome-wide epigenetic modifications in pancreatic islets\, skeletal muscle\, adipose tissue and the liver from patients with type 2 diabetes compared with non-diabetic control subjects. Dr. Ling’s research group has also shown that genetic and non-genetic factors such as SNPs\, exercise\, diet\, obesity and age alter the genome-wide epigenetic pattern in human primary tissues for type 2 diabetes.  More recently\, her group is trying to translate their epigenetic findings to biomarkers and novel therapies for precision medicine to improve prediction\, prevention and treatments of type 2 diabetes.  \n\n\n\nHost: Louella Vasquez\, NBIS (louella.vasquez@scilifelab.se) \n\n\n\nBroadcast link (live event):  https://lu-se.zoom.us/j/67681656100 \n\n\n\nThe talk will also be available afterwards on the NBIS YouTube channel. URL:https://www.scilifelab.se/event/how-does-epigenetic-mechanism-impact-type-2-diabetes/ LOCATION:Online event via Zoom CATEGORIES:Event ORGANIZER;CN="BiG Talks":MAILTO:info@nbis.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20240924T100000 DTEND;TZID=Europe/Stockholm:20240924T110000 DTSTAMP:20260404T234332 CREATED:20240826T124908Z LAST-MODIFIED:20251204T144518Z UID:10001337-1727172000-1727175600@www.scilifelab.se SUMMARY:Publish code\, software and workflows: Examples of why and how from SciLifeLab DESCRIPTION:This seminar will highlight why code\, research software and computational workflows are important research assets and it will also showcase practical approaches to sharing\, citing and getting recognition for your work. The event opens with a presentation followed by a dynamic Q&A session to elaborate on the motivations and good practices based in examples from the SciLifeLab community. This is the first event in the SciLifeLab Data Management seminar series Autumn 2024. \n\n\n\nWhen: Tuesday September 24\, 10-11 CET (Zoom) \n\n\n\nSpeaker: Wolmar Nyberg Åkerström\, Data Steward\, NBIS \n\n\n\nSciLifeLab Data Management seminar series is an event series by the SciLifeLab Data Centre and NBIS joint Data Management team aimed at both the life science research community and infrastructure\, and others with an interest in research data management in life sciences. The events will showcase how to put the FAIR principles\, and good data management into practice. The goal of the events in this seminar series is to provide interesting seminars around topics related to research data management in general but also to foster discussions around best practices and how they can be improved. The events takes place virtually (over Zoom) and are open to everyone\, (researchers\, staff\, RDM professionals etc.) working at or affiliated with a Swedish research institute or university. Each event is scheduled for 60 minutes\, including 15 minutes for discussions and Q & A. The videos will be published openly after the seminars at the SciLifeLab YouTube channel.More information about SciLifeLab Data Centre and NBIS joint Data Management team: https://data-guidelines.scilifelab.se/ \n\n\n\nWelcome!Organisers: SciLifeLab Data Centre and NBIS National Bioinformatics Infrastructure SwedenFor more information or inquiries please contact: data-management@scilifelab.se URL:https://www.scilifelab.se/event/publish-code-software-and-workflows-examples-of-why-and-how-from-scilifelab/ LOCATION:Online event via Zoom CATEGORIES:Community ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2024/02/DC_seminar-series_background1-1.png ORGANIZER;CN="Open Science Seminar Series":MAILTO:data-management@scilifelab.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20240924T120000 DTEND;TZID=Europe/Stockholm:20240925T120000 DTSTAMP:20260404T234332 CREATED:20240507T151251Z LAST-MODIFIED:20240925T061816Z UID:10001257-1727179200-1727265600@www.scilifelab.se SUMMARY:The Disruptive Role of Data and AI in the Life Sciences DESCRIPTION:A Joint Conference between DDLS\, WASP and WASP-HS\n\n\n\n\n\nThe conference will focus on different aspects of research where collaboration over scientific domains is essential and will explore the following topics: \n\n\n\n\nHow data- and AI-driven research is shaping the future of life science\n\n\n\nDevelopment of new approaches to human-in-the-loop technologies and their use\n\n\n\nThe need for studies at the intersection of society\, AI\, and data driven life sciences\n\n\n\n\n\n\n\n\nParticipants will have the opportunity to network\, be inspired by excellent international keynotes\, and take part of the latest research in Sweden. In addition to plenary keynotes\, the program will offer parallel sessions\, panel discussions\, mingle and poster sessions. \n\n\n\nPractical Details\n\n\n\nDates and times  \n\n\n\nSeptember 24\, 12:00 – September 25\, 12:30Registration is open from 11:00 on September 24. \n\n\n\nVenue: Wallenberg Conference Center\, Medicinaregatan 20 A\, Gothenburg \n\n\n\nInformation for registered poster \n\n\n\n• size of poster 90x 120 cm portrait format• posters can be hung on the 24th of September from 11:00 and should be done by 12:00• poster should be removed after the end of the conference on the 25th. You are responsible for your poster. Forgotten posters will not be saved.During the poster session 17:15-19 on the 24th of September we would appreciate if you are available by your poster for discussions and questions. During the Magnet mingle on the 25th you are also welcome to be by your poster. \n\n\n\nRegistration to the Conference\n\n\n\nRegister here \n\n\n\nThe registration is open until September 6. \n\n\n\nContact: ddls@scilifelab.se or info@wasp-sweden.org \n\n\n\nProgram\n\n\n\n24 September\n\n\n\n11:00 Registration opensPosters are to be hung up from 11:00 and should be done by 12:00. \n\n\n\n12:00 – 13:00 Lunch \n\n\n\nStart of conference \n\n\n\n13:00 – 13:15 Opening Program DirectorsChristofer Edling\, WASP-HSOlli Kallioniemi\, DDLSAnders Ynnerman\, WASPChair\, Rebecka Jörnsten WASP \n\n\n\n13:15-14:00 Keynote speaker Sunduz KelesIntegrative Approaches to Single-Cell Genomics for Personalized MedicineChair\, Rebecka Jörnsten WASP \n\n\n\n14:05- 14:50 Keynote speaker Ross KingThe Automation of ScienceChair\, Rebecka Jörnsten WASP \n\n\n\n14:50-15:20 Coffee \n\n\n\n15:20-16:20 Project presentation WASP DDLS (4 *15 min)Christopher Sprague\, Incorporating Stability Into Flow MatchingBjörn Wallner\, Improved protein structure prediction by adding noise at  inferenceHedvig Kjällström\, Unraveling the secrets of nature’s high-performance fiberAlexander Schliep and Pär Mattsson Molecular simulation and machine learning to delineate target binding of therapeutic oligonucleotidesChair\, Päivi Östling \n\n\n\n16:20-17:05 Project presentation WASP-HS DDLS (3* 15 min)Harald Hammarström\, Linguistic Diversity Through the Prism of BiodiversityStanley Greenstein\, AI in the Health Care Sector – Legal ChallengesSonja Aits\, Mapping the Nexus of Biodiversity\, Climate Change\, Human Society and Health using Large Language Models and other Data Science ApproachesChair\, Stefan Larsson \n\n\n\n17:15: – 19:00 Finger food and poster session \n\n\n\n25 September\n\n\n\n08:30-9:30 Project presentation WASP DDLS (4*15 min)Ingrid Hotz\, Tino Ebbers\, Characterization and visualization of cardiac spectral imaging dataSebastian Westenhoff\, cryoSPHERE: Single-particle heterogeneousreconstruction from cryo EMAndreas Kerren\, Visual Analytics for Enhancing Quality and Trust in Genome-wide Expression Clustering and AnnotationMinh Hoang Vu\, Anonymization of Data in Precision Medicine ResearchChair\, Olli Kallioniemi \n\n\n\n09:30-10:45 Magnet mingle including coffeeChair\, Rebecka Jörnsten and Christofer Edling \n\n\n\n10:45-11:30 Keynote Speaker: Klaus HøyerAll the data from everywhere all at once: data integration\, AI imaginaries\, and their unpredictable outcomesChair\, Christofer Edling \n\n\n\n11:30-12:15 Panel on common research challengesSunduz Keles\, Ross King\, Klaus Hoyer\, Andreas Kerren\, Tino EbbersModerators\, Rebecka Jörnsten and Stefan Larsson \n\n\n\n12:15 Closing remarks\, Program DirectorsChristofer Edling\, WASP-HSOlli Kallioniemi\, DDLSRebecka Jörnsten WASP \n\n\n\n12:30 Lunch to go \n\n\n\nKeynote Speakers\n\n\n\nSunduz Keles\n\nTitle: Integrative Approaches to Single-Cell Genomics for Personalized MedicineBio: Dr. Keles obtained her Ph.D. in Biostatistics from the University of California at Berkeley. After a year-long postdoctoral appointment at UC Berkeley\, she joined the Department of Biostatistics and Medical Informatics and the Department of Statistics at the University of Wisconsin\, Madison. She has twenty years of experience in developing statistical and computational methods for genomics\, including serving as an ENCODE PI\, and pioneering foundational statistical models for leveraging multi-mapping reads in high throughput sequencing data analysis (ChIP-seq\, Hi-C). \n\n\nHer research interests span developing statistical and computational methods for denoising and signal extraction from sequencing data and modeling of high dimensional data. Her computational approaches led to fundamental contributions on how GATA factors mediate transcriptional regulation in HSPCs and erythroid cells. Dr. Keles is an elected fellow of the American Statistical Association. \n\n\n\n\n\nKlaus Lindgaard Høyer\nTitle: All the data from everywhere all at once: data integration\, AI imaginaries\, and their unpredictable outcomesBio: Klaus Hoeyer is professor of Medical Science and Technology Studies at the Centre for Medical Science and Technology Studies\, University of Copenhagen. His research focuses on the links between policy\, practice and experience in relations to medical research and clinical practice. In recent years\, he has focused mainly on what he calls intensified data sourcing in healthcare and how it interacts with and changes the health services. This research is primarily financed by the European Research Council. \n\n\n\n\nRoss D. King\nTitle: The automation of scienceBio: Ross D. King did his PhD on applying machine learning to predicting protein structure at the Turing Institute in Glasgow. He has joint positions at Chalmers Institute of Technology\, and the University of Cambridge. He is one of the most experienced machine learning researchers in Europe. \n\n\n\nHis main research interest is the interface between computer science and science. He originated the idea of a ‘Robot Scientist’: integrating AI and laboratory robotics to physically implement closed-loop scientific discovery. His Robot Scientist ‘Adam’ was the first machine to autonomously discover scientific knowledge. His Robot Scientist ‘Eve’ is currently searching for drugs against neglected tropical diseases\, and COVID.  His other core research interest is DNA computing. \n\n\n\n\nProject Presenters\n\n\n\nAlexander Schliep\nTitle: Molecular simulation and machine learning to delineate target binding of therapeutic oligonucleotides \n\n\n\nBio: Alexander Schliep is the chair for Medical Bioinformatics at the Faculty of Health Sciences Brandenburg at Brandenburg Technical University Cottbus-Senftenberg\, with a secondary appointment at the University of Gothenburg and member of the WASP (Wallenberg AI\, Autonomous Systems and Software Program) research collegium. \n\n\n\nHis current research program is focused on machine learning and algorithmics for analyses of genomic data and nucleic acid-based therapeutics\, including machine learning for pan-genome graph analyses\, efficient analysis algorithms for large genomic datasets\, and federated\, privacy-preserving methods for training ML/AI models for oligonucleotide therapeutics. \n\n\n\n\nAndreas Kerren\nTitle: Visual Analytics for Enhancing Quality and Trust in Genome-wide Expression Clustering and Annotation \n\n\n\nBio: Prof. Dr. Andreas Kerren received his PhD degree in Computer Science from Saarland University\, Saarbrücken\, Germany. In 2008\, he achieved his habilitation (docent competence) from Växjö University\, Sweden. \n\n\n\nDr. Kerren is currently a Full Professor of Information Visualization\, Linköping University (LiU) and Linnaeus University (LNU)\, Sweden. He holds the Chair of Information Visualization at LiU and is head of the research group Information and Software Visualization at LNU. In addition\, he is an ELLIIT professor supported by the Excellence Center at Linköping–Lund in Information Technology and key researcher of the Linnaeus University Centre for Data Intensive Sciences and Applications. \n\n\n\nHis main research interests include several areas of information visualization and visual analytics\, especially visual network analytics\, text visualization\, and the use of visual analytics for explainable AI. \n\n\n\nHe has been editorial board member of a number of journals such as Information Visualization or Computer Graphics Forum\, has served as organizer/program chair at numerous conferences such as IEEE VISSOFT 2013/2018 or GD 2018\, and has edited a number of successful books on human-centered visualization. Dr. Kerren has published more than 200 peer-reviewed papers\, articles\, and book chapters. \n\n\n\n\nBjörn Wallner\nTitle: Improved protein structure prediction by adding noise at inference \n\n\n\nBio: Björn Wallner has been a faculty member at Linköping University since 2011 and a Professor in Bioinformatics since 2019. He obtained his Ph.D. in Bioinformatics from Stockholm University in 2005 and did postdoctoral work at the University of Washington from 2006-2008. \n\n\n\nHis research interests include protein structure prediction\, protein-protein interactions\, protein function\, disorder\, flexibility\, and dynamics. \n\n\n\n\nChristopher Sprague\nTitle: Incorporating Stability Into Flow Matching \n\n\n\nBio: Christopher Iliffe Sprague is a postdoctoral researcher at KTH Royal Institute of Technology and SciLifeLab\, working with Arne Elofsson and Hossein Azizpour on deep learning approaches for protein-protein interactions. He earned his PhD in robotics from KTH\, where he focused on developing efficient and trustworthy AI for critical robotic systems. \n\n\n\nCurrently\, as a postdoc\, Christopher is leveraging his robotics expertise to enhance inductive biases in deep generative models\, particularly for equilibrium generation tasks like molecular docking. His research interests include flow-based generative models\, hybrid dynamical systems\, and drug design \n\n\n\n\nHarald Hammarström\nTitle: Linguistic Diversity Through the Prism of Biodiversity \n\n\n\nBio: Harald Hammarström is Professor of General Linguistics atUppsala University. He has a background in both Computer Science andLinguistics. \n\n\n\nHe has a very broad linguistic interest spanning allareas of the world but specializing in minority languages in Papua\,Africa and South America. His research activities span fromdocumentary fieldwork in Papua\, Indonesia\, classical linguisticanalytic work\, typological databases\, and NLP for lesser-knownlanguages. \n\n\n\nHe is currently focussing on large-scale empirical andcomputational approaches to linguistic diversity\, genealogical/arealrelationships and language universals. \n\n\n\n\nHedvig Kjellström \nTitel: Unraveling the secrets of nature’s high-performance fiber \n\n\n\nBio: Hedvig Kjellström is a Professor in the Division of Robotics\, Perception and Learning at KTH Royal Institute of Technology\, Sweden\, and also affiliated with Swedish University of Agricultural Sciences\, Swedish e-Science Research Centre\, and Max Planck Institute for Intelligent Systems\, Germany. She received an MSc in Engineering Physics and a PhD in Computer Science from KTH in 1997 and 2001\, respectively\, and thereafter worked at the Swedish Defence Research Agency\, before returning to a faculty position at KTH. Her present research focuses on methods for enabling artificial agents to interpret human and animal behavior. These ideas are applied in the study of human aesthetic bodily expressions such as in music and dance\, modeling and interpreting human communicative behavior\, and the understanding of animal behavior and experiences. In order to accomplish this\, methods are developed for agents to perceive the world and build representations of it through vision. \n\n\n\nHedvig has received several prizes for her research\, including the 2010 Koenderink Prize for fundamental contributions in computer vision. She has written around 150 papers in the fields of computer vision\, machine learning\, robotics\, information fusion\, cognitive science\, speech\, and human-computer interaction. She is mostly active within computer vision\, where she is an Editor-in-Chief for CVIU\, a Program Chair for CVPR 2025\, and regularly serves as Area Chair for the major conferences.  \n\n\n\n\nIngrid Hotz\nTitle: Characterization and visualization of cardiac spectral imaging data \n\n\n\nBio: Ingrid Hotz is a professor at Linköping University in Sweden\, leading the Scientific Visualization group in the Department of Science and Technology. She holds an M.S. in theoretical physics from Ludwig Maximilian University\, Munich\, and a Ph.D. in computer science from the University of Kaiserslautern. Hotz has held research positions at the Institute for Data Analysis and Visualization (IDAV) at UC Davis\, the Zuse Institute Berlin\, and the German Aerospace Center (DLR). Since 2015\, she has been a professor at Linköping University and was named the Dr. Ram Kumar IISc Distinguished Visiting Chair Professor at the Indian Institute of Science in 2022. \n\n\n\nHer research focuses on scientific visualization and topological data analysis\, aiming to develop advanced visual analysis tools for complex datasets across various fields\, including engineering\, physics\, chemistry\, and medicine. She integrates methods from computer science and mathematics\, such as computer graphics and computational topology\, with a participatory design approach to ensure practical and relevant solutions. \n\n\n\n\nMinh Hoang Vu\nTitle: Anonymization of Data in Precision Medicine Research \n\n\n\nBio: Minh Vu is a postdoctoral researcher at IceLab\, Umeå University\, working under the supervision of Martin Rosvall and Beatrice Melin. Their research focuses on anonymizing and visualizing biobank data to facilitate meaningful insights and discoveries in disease understanding and treatment development. \n\n\n\n\nPär Matsson\nTitle: Molecular simulation and machine learning to delineate target binding of therapeutic oligonucleotides \n\n\n\nBio: Pär Matsson is Professor of Pharmacokinetics at the Sahlgrenska Academy\, University of Gothenburg\, and Scientific Director of OligoNova Hub – the SciLifeLab infrastructure for development of therapeutic oligonucleotides. \n\n\n\nHis research is centered on elucidating the molecular mechanisms of cellular and subcellular drug disposition\, and how they influence therapeutic effect. A particular focus is on the cellular disposition and effects of non-traditional drug modalities\, including therapeutic oligonucleotides and targeted protein degraders (PROTACs). \n\n\n\n\nSonja Aits\nTitle: Mapping the Nexus of Biodiversity\, Climate Change\, Human Society and Health using Large Language Models and other Data Science Approaches \n\n\n\nBio: Sonja Aits leads the “Cell Death\, Lysosomes and Artificial Intelligence” group at the Faculty of Medicine\, Lund University\, which works at the intersection of data\, life and sustainability science. Her group develops computational tools such as large language models for scientific text mining and computer vision models for histology and high-content microscopy and uses them to identify biological pathways and disease mechanisms in humans and other species as well as intervention strategies that promote human health\, biodiversity and sustainability. \n\n\n\nSonja helps coordinate AI Lund\, Lund University’s umbrella organization for AI-related research\, outreach and education\, and the profile area “Nature-based future solutions”. In addition\, she serves as study director of the COMPUTE research school\, where she has developed the PhD course program “AI in Medicine and Life Science”. She is also deeply engaged in open education and public outreach. \n\n\n\n\nStanley Greenstein\nTitle: AI in the Health Care Sector – Legal Challenges \n\n\n\nBio: Stanley Greenstein (Jur. Dr.) is an Associate Professor (Docent) in Law and Information Technology\, Faculty of Law\, Stockholm University. He is Chairman of the Board\, Swedish Law and Informatics Research Institute (IRI\, https://irilaw.org/)\, Chairman of the Board\, Foundation for Legal Information (Stiftelsen för rättsinformation) and a Digital Futures faculty member (https://www.digitalfutures.kth.se/about/). \n\n\n\nStanley’s primary academic focus is cross-disciplinary in nature and addresses the regulation of emerging digital technologies\, especially artificial intelligence (AI). His teaching\, research and participation in externally funded projects has revolved around the subject areas of ethics\, data protection\, sustainability and legal design. \n\n\n\n\nTino Ebbers\nTitle: Characterization and visualization of cardiac spectral imaging data \n\n\n\nBio: Tino Ebbers is a professor of physiological measurements at Linköping University\, with a focus on cardiac imaging\, modeling\, and simulation. He holds an MSc in Electrical Engineering from the University of Twente and a PhD in Biomedical Engineering from Linköping University. After completing his PhD\, he worked at Philips Medical Systems before returning to academia. He also served as a visiting professor at the University of California\, San Francisco. \n\n\n\nWith over 100 publications in leading scientific journals and numerous contributions to international conferences\, Tino Ebbers has made a significant impact through his multidisciplinary approach to merging technical research with clinical applications. He is best known for pioneering 4D flow MRI\, a breakthrough technology now widely used to study cardiovascular blood flow in both research and clinical settings. His contributions have greatly advanced cardiovascular imaging and led to major innovations in the diagnosis\, treatment\, and management of cardiovascular diseases. \n\n\n\n\nBackground\n\n\n\nSince 2021 the Wallenberg AI\, Autonomous Systems and Software Program (WASP) and the SciLifeLab and Wallenberg National Program for Data-Driven Life Science (DDLS) are collaborating through joint research projects with the ultimate goal of solving ground-breaking research questions across disciplines. In line with this\, the programs will now host the first\, joint annual conference where common research topics are highlighted. Additionally\, the increasingly important humanity and societal aspects of the research will be addressed through participation of the WASP-HS program (Wallenberg AI\, Autonomous Systems and Software Program- Humanity and Society). Read more about the different research programs here: \n\n\n\nDDLS\n\n\n\nWASP\n\n\n\nWASP-HS \n\n\n\nOpen Calls\n\n\n\nThe conference is an opportunity to find collaborators for the two open calls: \n\n\n\nWASP-DDLS: NEST projects https://wasp-sweden.org/calls/call-for-joint-wasp-and-ddls-nests/  \n\n\n\nWASP-HS-DDLS: Research Initiation Grants for Data-Driven Life Sciences and Society https://wasp-hs.org/open-call-research-initiation-grants-for-data-driven-life-sciences-and-society/  \n\n\n\n \n\n\n\n \n\n\n\n\n\n\n\n \n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n \n\n\n\nRead more\n\n\n\nRead more\n\n\n\nRead more URL:https://www.scilifelab.se/event/the-disruptive-role-of-data-and-ai-in-the-life-sciences/ LOCATION:Conference Centre Wallenberg\, Medicinaregatan 20A\, Gothenburg\, 413 90\, Sweden CATEGORIES:Event ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2024/05/DDLS_WASP_WP-1536x864-1.jpg END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20240925T100000 DTEND;TZID=Europe/Stockholm:20240925T110000 DTSTAMP:20260404T234332 CREATED:20240916T114029Z LAST-MODIFIED:20240916T114244Z UID:10001356-1727258400-1727262000@www.scilifelab.se SUMMARY:DNA microscopy in two and three dimensions DESCRIPTION:Speaker: Joshua Weinstein\, University of Chicago \n\n\n\nHost: Ian Hoffecker\, SciLifeLab \n\n\n\nThis lecture is open with no registration required. \n\n\n\nAbstract \n\n\n\nLymphatic\, nervous\, and tumoral tissues\, among others\, exhibit physiology that emerges from three-dimensional interactions between genetically unique cells. Technologies capable of volumetrically imaging transcriptomes\, genotypes\, and morphologies in a single de novo measurement can provide a critical lens into the biological complexity of living systems. We present on our experimental and computational work to develop DNA microscopy: a modality of imaging that captures physical images of specimen genetic content using a massive distributed network of DNA molecules inside it. We demonstrate DNA microscopy in two-dimensional cell cultures and genome-wide in intact zebrafish embryos. \n\n\n\nBiography \n\n\n\nJoshua Weinstein is a biophysicist and molecular technologist. He works on developing DNA-based technologies for high-throughput encoding and decoding of biological information with a view toward applications in biology and medicine. He has previously worked on applying massively parallel DNA sequencing to the study of immune receptor repertoires. Recently\, he invented DNA microscopy\, an imaging modality that uses DNA rather than light as an imaging medium in order to generate detailed pictures of how genetic diversity distributes spatially across biological specimens. Prof. Weinsten completed his undergraduate studies in physics and biophysics at the University of Pennsylvania\, and his PhD in biophysics at Stanford University in 2012 under the direction of Stephen Quake and Daniel Fisher. There\, he published the first global measurements of immune receptor sequence repertoires\, using the zebrafish as a model organism. Weinstein later applied repertoire-sequencing to immune development and human vaccine response. Weinsten completed his postdoctoral work at the Broad Institute/Massachusetts Institute of Technology\, under the joint-mentorship of Feng Zhang and Aviv Regev\, where he was supported by a Simons Fellowship from the Life Sciences Research Foundation. There\, he developed DNA microscopy\, enabling biological specimens to “image themselves” and thereby generating detailed spatio-genetic data sets\, which bypass the need for specialized equipment. In 2019\, Weinstein moved to his current position as assistant professor of molecular engineering and medicine in the section of genetic medicine at the University of Chicago. URL:https://www.scilifelab.se/event/dna-microscopy/ LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden CATEGORIES:Event ORGANIZER;CN="Ian Hoffecker":MAILTO:ian.hoffecker@scilifelab.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20240925T150000 DTEND;TZID=Europe/Stockholm:20240925T160000 DTSTAMP:20260404T234332 CREATED:20240904T115713Z LAST-MODIFIED:20250409T200333Z UID:10001495-1727276400-1727280000@www.scilifelab.se SUMMARY:SciLifeLab Lund Seminar Series DESCRIPTION:Welcome to the SciLifeLab Lund seminar series! \n\n\n\nThese seminars are designed to highlight SciLifeLab Lund\, our cutting-edge research infrastructure\, and the diverse resources available to the scientific community. \n\n\n\nAdditionally\, we aim to provide our users with a platform to showcase their projects and the results they have achieved through utilizing our services. \n\n\n\nIn the 1st seminar\, the site Director Markus Heidenblad\, the Data Science Coordinator Wojtek Potrzebowski\, and Site Coordinator Anabella Aguilera will introduce SciLifeLab Lund.   \n\n\n\nRegistration\n\n\n\nRegister for the next seminars!\n\n\n\n30th October 2024 | Swedish National Infrastructure for Biological Mass Spectrometry (BioMS) \n\n\n\nRegister Seminar October\n\n\n\n18th December 2024 | Center Translational Genomics within Clinical Genomics Lund \n\n\n\nRegister Seminar December\n\n\n\n29th January 2025 | CryoEM for Life Sciences at Lund University \n\n\n\nRegister Seminar January\n\n\n\n26th February 2025 | Display and Selection Technologies \n\n\n\nRegister Seminar February\n\n\n\n26th March 2025 | Lund University Bioimaging Centre (LBIC)  \n\n\n\nRegister Seminar March\n\n\n\n23rd April 2025 | Lund Protein Production Platform (LP3) \n\n\n\nRegister Seminar April\n\n\n\n28th May 2025 | National Bioinformatics Infrastructure (NBIS) \n\n\n\nRegister Seminar May\n\n\n\n18th June | Structural Proteomics \n\n\n\nRegister Seminar June URL:https://www.scilifelab.se/event/scilifelab-lund-seminar-series/ LOCATION:Belfragesalen\, BMC D15\, Klinikgatan 32\, Lund\, Sweden CATEGORIES:Event END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20240925T150000 DTEND;TZID=Europe/Stockholm:20240925T160000 DTSTAMP:20260404T234332 CREATED:20250224T130732Z LAST-MODIFIED:20250224T131448Z UID:10001346-1727276400-1727280000@www.scilifelab.se SUMMARY:SciLifeLab Lund Seminar Series DESCRIPTION:Welcome to the SciLifeLab Lund seminar series! \n\n\n\nThese seminars are designed to highlight SciLifeLab Lund\, our cutting-edge research infrastructure\, and the diverse resources available to the scientific community. \n\n\n\nAdditionally\, we aim to provide our users with a platform to showcase their projects and the results they have achieved through utilizing our services. \n\n\n\nIn the 1st seminar\, the site Director Markus Heidenblad\, the Data Science Coordinator Wojtek Potrzebowski\, and Site Coordinator Anabella Aguilera will introduce SciLifeLab Lund.   \n\n\n\nRegistration\n\n\n\nRegister for the next seminars!\n\n\n\n30th October 2024 | Swedish National Infrastructure for Biological Mass Spectrometry (BioMS) \n\n\n\nRegister Seminar October\n\n\n\n18th December 2024 | Center Translational Genomics within Clinical Genomics Lund \n\n\n\nRegister Seminar December\n\n\n\n29th January 2025 | CryoEM for Life Sciences at Lund University \n\n\n\nRegister Seminar January\n\n\n\n26th February 2025 | Display and Selection Technologies \n\n\n\nRegister Seminar February\n\n\n\n26th March 2025 | Lund University Bioimaging Centre (LBIC)  \n\n\n\nRegister Seminar March\n\n\n\n23rd April 2025 | Lund Protein Production Platform (LP3) \n\n\n\nRegister Seminar April\n\n\n\n28th May 2025 | National Bioinformatics Infrastructure (NBIS) \n\n\n\nRegister Seminar May\n\n\n\n18th June | Structural Proteomics \n\n\n\nRegister Seminar June URL:https://www.scilifelab.se/event/scilifelab-lund-seminar-series-2/ LOCATION:Belfragesalen\, BMC D15\, Klinikgatan 32\, Lund\, Sweden CATEGORIES:Event ORGANIZER;CN="SciLifeLab Lund":MAILTO:lund@scilifelab.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20240926T090000 DTEND;TZID=Europe/Stockholm:20240926T170000 DTSTAMP:20260404T234332 CREATED:20240610T130511Z LAST-MODIFIED:20240924T143954Z UID:10001274-1727341200-1727370000@www.scilifelab.se SUMMARY:Data Driven Multi-omics Integration in Life Sciences DESCRIPTION:The 10th RIKEN-KI-SciLifeLab Symposium \n\n\n\nLarge amounts of data are being generated in various omics disciplines such as genomics\, genetics\, transcriptomics\, proteomics\, metabolomics\, and epigenomics. Integrating these multi-dimensional omics datasets offers unprecedented opportunities to gain comprehensive insights into complex biological systems and their underlying mechanisms. This symposium on “Data Driven Multi-omics Integration in Life Sciences” brings together experts to explore the integration of multi-dimensional omics datasets. Speakers will specifically highlight the integrative aspect of their work and how it helped in understanding biology and medical sciences. \n\n\n\nRegistration\n\n\n\nProgram\n\n\n\n8:30Registration9:00Opening of SymposiumProf. Jan Ellenberg\, SciLifeLab DirectorProf. Annika Östman Wernerson\,KI PresidentProf. Kazuhiko Yamamoto (RIKEN Center IMS Director)Section 1: Transcriptomics/Genetics-centric integrationChair: Dr. Katsuyuki Yugi\, Dr. Chung-Chau Hon9:15Multi omics study on human immune systemProf. Kazuhiko Yamamoto (RIKEN IMS)9:45Mapping immune cell clonal dynamics within tissuesDr. Camilla Engblom (KI and SciLifeLab)10:05Integrating human genomics with population\, individual\, and single cell resolutionsDr. Yukinori Okada (RIKEN IMS)10:25Mobile element variation drives population-specific genome diversification\, gene regulation\, and disease riskDr. Kojima Sohei (RIKEN IMS)10:45Coffee BreakSpecial session: KI\, SciLifeLab and Japan11:15Introduction of JSPSJSPS Stockholm Office11:30RemarksProf. Per Nilsson (KI Japan Coordinator)11:30Section 2: Metabolomics/Proteomics-centric integrationChair: Dr. Chung-Chau Hon\, Dr. Katsuyuki Yugi11:35Bridging the gap between human genome and phenome with trans-omics networks of mouseDr. Katsuyuki Yugi (RIKEN IMS)11:55The new wave of interaction proteomics for mapping virus-host interactionsDr. Andrea Fossati (KI and SciLifeLab)12:15Decoding the cellular effects of pathogenic mutations through PTM and interaction proteomicsDr. Koshi Imami (RIKEN IMS)12:35Lunch BreakSection 3: Single-cell genomics-centric integrationChair: Dr. Carsten Daub\, Dr. Chung-Chau Hon13:45Spatial omics approaches for resolving stromal and neuro-immune interactions in osteoarthritisDr. Lea Mikkola (University of Turku)14:05Understanding disease heritability using single cell transcriptomics and deep learningDr. Chung-Chau Hon (RIKEN IMS)14:25Self-assembled surfaces for map-free spatial transcriptomicsDr. Erik Benson (KI and SciLifeLab)14:45Deciphering state-dependent immune features from multi-layer human omics at single-cell resolutionDr. Ryuya Edahiro (RIKEN IMS)15:05Genome-wide nutrition-induced ribosome frameshifts modulate transcriptome abundanceDr. Vicent Pelechano (KI and SciLifeLab)15:25Coffee Break (30 mins)Section 4: Large scale Data Integration/Artificial intelligenceChair: Dr. Carsten Daub\, Dr. Chung-Chau Hon15:55Use of AI in Biotechnology in Japan: Policy PerspectivesDr. Yusuke Mori (University of Tsukuba/Japan Embassy)16:15Autonomous Scientific Discovery by AIDr. Jun Seita (RIKEN IMS)16:35Predicting Drug Responses in Cancer with Interactome-Based AIDr. Avlant Nilsson (KI and SciLifeLab)16:55ClosingDr. Carsten Daub & Dr. Chung Chau Hon17:00Mingle & Pub\n\n\n\nSymposium History\n\n\n\nThis symposium series is organized between RIKEN in Japan\, and Karolinska Institutet and SciLifeLab in Sweden. The symposia alternate between RIKEN and SciLifeLab.  \n\n\n\nThe overall goals of the symposia are to \n\n\n\n\nIdentify common scientific interests between RIKEN and SciLifeLab\, \n\n\n\nIdentify complementary skills and technologies for collaborations \n\n\n\nEncourage the exchange of Ph.D. students and postdocs between RIKEN and SciLifeLab/KI. \n\n\n\n\nSeveral collaborations between groups at KI\, SciLifeLab and RIKEN started based on first contact during one of the symposia. \n\n\n\nOrganizers\n\n\n\n\nDr. Kazuhiko Yamamoto (RIKEN IMS)\n\n\n\nDr. Carsten Daub (Karolinska Institutet/SciLifeLab)\n\n\n\nDr. Harukazu Suzuki (RIKEN IMS)\n\n\n\nDr. Chung-Chau Hon (RIKEN IMS)\n\n\n\n\n\n\n\n\n \n\n\n\n \n\n\n\n \n\n\n\nContact\n\n\n\nCarsten Daub\, KI/SciLifeLab \n\n\n\ncarsten.daub@scilifelab.se URL:https://www.scilifelab.se/event/data-driven-multi-omics-integration-in-life-sciences-the-10th-riken-ki-scilifelab-symposium/ LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden CATEGORIES:Event END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20240926T113000 DTEND;TZID=Europe/Stockholm:20240926T133000 DTSTAMP:20260404T234332 CREATED:20240905T110109Z LAST-MODIFIED:20240910T082704Z UID:10001347-1727350200-1727357400@www.scilifelab.se SUMMARY:Scalable\, Accessible Single Cell with Parse Biosciences' Evercode DESCRIPTION:Join Us for a Seminar on Single-cell RNA Sequencing (scRNA-seq)\n\n\n\nSingle-cell RNA sequencing (scRNA-seq) has become a key tool in genomics\, offering researchers deep insights into cellular behavior. While droplet-based methods are commonly used\, they often come with limitations in flexibility\, cost\, and scalability. Parse Biosciences’ Evercode technology offers a solution\, enabling scalable single-cell sequencing without the need for specialized equipment. \n\n\n\nThis seminar\, co-hosted by Clinical Genomics Gothenburg (CGG) and Parse Biosciences\, will feature: \n\n\n\n\nIntroduction to Evercode Technology by Parse Biosciences\, including practical tips for sample preparation and analysis.\n\n\n\nUser Perspective Presentation by Joan Camuñas\, Dept of Medical Biochemistry and Cell biology\n\n\n\nResearch Support Overview by CGG\, where researchers can get support with experimental design\, lab work\, and data analysis for single-cell projects.\n\n\n\n\n\nMore information and registration\n\n\n\n\nLunch will be provided for onsite participation.Registration deadline: September 23 \n\n\n\nNo registration is required for online participation: \n\n\n\n\nZoom link URL:https://www.scilifelab.se/event/scalable-accessible-single-cell-with-parse-biosciences-evercode/ LOCATION:Birgit Thilander Lecture Hall\, Medicinaregatan 3\, Göteborg CATEGORIES:Event END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20240926T120000 DTEND;TZID=Europe/Stockholm:20240926T130000 DTSTAMP:20260404T234332 CREATED:20240708T135748Z LAST-MODIFIED:20240926T080910Z UID:10001296-1727352000-1727355600@www.scilifelab.se SUMMARY:Campus Solna Seminar Series: Qiuzhen Li & Luca Panconi DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 20 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nPhD students that are attending the Campus Solna Seminar lectures will have the opportunity to gain credits. For the syllabus and instructions on how to obtain these credits\, read this document. Please contact your own department at your host University to confirm.See here the full schedule for this semester. \n\n\n\nThis week:\n\n\n\n\n\n\nQiuzhen Li\n\n\n\nPatrick Bryant – alpha 2 \n\n\n\nDesign Peptide Binder Using Machine Learning \n\n\n\n\n\nLuca Panconi\n\n\n\nJuliette Grifflé – gamma 6 \n\n\n\nTowards computationally-optimised immunotherapy \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page. URL:https://www.scilifelab.se/event/campus-solna-seminar-series-qiuzhen-li-ines-cunha/ LOCATION:Milkyway SciLifeLab Solna\, Tomtebodavägen 23\, Solna CATEGORIES:Community ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/09/IMG_20221103_123412496_HDR2-scaled.jpg ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20240930T080000 DTEND;TZID=Europe/Stockholm:20241002T170000 DTSTAMP:20260404T234332 CREATED:20240521T064747Z LAST-MODIFIED:20240521T064748Z UID:10001263-1727683200-1727888400@www.scilifelab.se SUMMARY:Metabolomics in Molecular Medicine - from idea to data interpretation DESCRIPTION:A jointly organized workshop by the Swedish Metabolomics Centre (SMC) and FIMM’s Metabolomics Unit – University of Helsinki providing an introduction to different aspects of metabolomics\, from experimental design to data analysis. The programme consists of a public symposium on the first day and practical elements for workshop participants on days 2-3. Workshop participants are also expected to attend the symposium on the first day. \n\n\n\nRead more\n\n\n\nMetabolomics measures small molecules commonly known as metabolites that all together comprise a metabolome of a biological system. Since metabolome is a reflection of physiological status\, metabolomics helps us to understand molecular mechanisms such as drug responses and to find new indicators for diseases. \n\n\n\nThis workshop provides an introduction to mass spectrometry-based metabolomics with a special focus on its applications in molecular medicine. The workshop starts with a mini-symposium where the experts in the field discuss the recent advancements and applications in metabolomics research in life sciences. The following two days of practical training will cover the metabolomics workflow from the principles of experimental design\, sample preparation\, theory of chromatographic separation and mass spectrometry to data acquisition\, pre-processing\, analysis and interpretation. \n\n\n\nContact \n\n\n\nAnnika Johansson \n\n\n\nEmail \n\n\n\n+46 90 786 55 51 URL:https://www.scilifelab.se/event/metabolomics-in-molecular-medicine-from-idea-to-data-interpretation/ LOCATION:KBC Building Umeå\, Linneaus Väg 6\, Umeå CATEGORIES:Event ORGANIZER;CN="Swedish Metabolomics Centre (SMC)":MAILTO:annika.johansson01@umu.se END:VEVENT END:VCALENDAR