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BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20211213T090000
DTEND;TZID=Europe/Stockholm:20211214T153000
DTSTAMP:20260404T001445
CREATED:20211104T100412Z
LAST-MODIFIED:20211210T140942Z
UID:10000480-1639386000-1639495800@www.scilifelab.se
SUMMARY:Cryo-EM 2021 user meeting  & Integrated Structural Biology user day
DESCRIPTION:The Integrated Structural Biology welcomes you to these two events. You can join either event – or both – and you can choose to participate online or on site in Air&Fire at SciLifeLab Campus Solna.  \n\n\n\nWe invite you to either or both of our events: \n\n\n\n3rd Cryo-EM Facility National Meeting – December 131st Integrated Structural Biology platform user meeting – December 14\n\n\n\n3rd Cryo-EM Facility National Meeting \n\n\n\nWelcome to join this meeting with users to discuss results and needs from the community. \n\n\n\nProgram – December 13 \n\n\n\n9.00News from the Cryo-EM facility nodes in Stockholm and Umeå10.00Fika10.20PReSTO for Cryo-EM\, Torben Rasmussen\, Linköping10.40Chameleon sample preparation for cryo-EM\,Sacha de Carlo\, SPT Labtech11:00Recent advances in the field of CryoEM Gaurav Sharma\, Thermo Fisher Scientific.11:20Structural proteomics for studying protein interactions and dynamicsSimon Ekström\, Lund University11:40Big and dynamic – An ancient and universal NMP kinaseTobias Sparrman12:00Lunch13:00Cryo-EM user discussion\, previous in-person meeting (drop-in service\, booking system\, cryoScreeeNET) and sensing the interest for potentiating new applications (electron diffraction\, FIB cryoET\, cryo-CLEM)15:00Wrap-up16:00End of Meeting\n\n\n\nRegister to attend this event\n\n\n\n\n\n\n\n1st Integrated Structural Biology platform user meeting \n\n\n\nThe purpose of this meeting is to show complementary techniques available at SciLifeLab Infrastructure and to encourage interactions. \n\n\n\nProgram – December 14 \n\n\n\n8:45General introduction to ISB platform9.00Presentation of Protein Production Sweden (PPS)Malin Bäckström9.15MicroED for structure determination of biomolecules\,  Laura Pacoste\, SU9.35NMR studies on VIM-2\, Hermina Wieske\, Uppsala University9.55Proteome-wide crosslinking mass spectrometry of host-pathogen interactions\, Lotta Happonen\, Lund University10.15Coffee Break11.00Structure and dynamics of the chromatin remodeler ALC1 bound to a PARylated nucleosome\, Luka Bacic\, Uppsala University11.20Structural basis of DegP-protease temperature-dependent activation\, Darius Šulskis\, University of Gothenburg11.40The interface study of M1-protein and M1-specific IgG via structural mass spectrometry\, TX-MS and HDX-MS\, Di Tang\, Lund University12.00Lunch13.00Cryo-EM structural study of the P5-type ATPases” Ping Li\, Kopenhagen University\, LU13.20Characterizing proteins in their native environment: Advances in in situ NMR\, Johannes Thoma\, University of Gothenburg13.40Unravelling the molecular basis of cell protection by Bcl-2 proteins\, Gerhard Gröbner\, Umeå University14.00Bruker on UF-MAS and structural biology14.30Discussion – user feed back15.20Final notes15:30End of Day\n\n\n\nRegister to attend this event
URL:https://www.scilifelab.se/event/cryo-em-and-isb-day-2021/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Event
ORGANIZER;CN="Integrated Structural Biology Platform at SciLifeLab":MAILTO:cecilia.persson@nmr.gu.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20211213T150000
DTEND;TZID=Europe/Stockholm:20211213T160000
DTSTAMP:20260404T001445
CREATED:20211209T160326Z
LAST-MODIFIED:20220330T154146Z
UID:10000500-1639407600-1639411200@www.scilifelab.se
SUMMARY:RNA Medicine\, the Next Frontier: Therapeutic Targeting of Non-Coding RNAs
DESCRIPTION:Anders NäärDepartment of Nutritional Sciences & Toxicology\, University of California\, Berkeley  \n\n\n\nBiography/Talk content\n\n\n\n\n\n\n\nAnders M. Näär is a Professor of Metabolic Biology in the Department of Nutritional Sciences & Toxicology at the University of California\, Berkeley. He was a postdoctoral research fellow with Robert Tjian at UC Berkeley/HHMI\, where he discovered the human Mediator transcriptional co-activator complex. Dr. Näär was a Professor in the Department of Cell Biology\, Harvard Medical School and the Massachusetts General Hospital Cancer Center. A major focus of his lab is to understand transcriptional and microRNA regulatory mechanisms controlling metabolic homeostasis to guide novel therapeutic strategies for the treatment of cardiovascular disease\, obesity\, Type 2 diabetes\, non-alcoholic fatty liver diseases (NAFLD/NASH)\, age-related macular degeneration (AMD)\, Duchenne muscular dystrophy (DMD)\, multi-drug resistant fungal infections\, and numerous types of cancer. His work resulted in a number of impactful studies\, patents and foundation of companies. In his talk\, Anders will broadcast his latest ventures in using RNA therapeutics in combating human diseases. \n\n\n\nDate: 13 December 2021Time: 3pm \n\n\n\nVenue (format hybrid): SciLifeLab\, lunchroom\, y2The ZOOM link is: https://ki-se.zoom.us/j/68353175106?pwd=bHZVYjFTMDR2YTN2ZzU1Nzk4eUZWdz09 \n\n\n\nMeeting ID: 683 5317 5106Passcode: 306128
URL:https://www.scilifelab.se/event/rna-medicine-the-next-frontier-therapeutic-targeting-of-non-coding-rnas/
LOCATION:Gamma 2 Lunchroom\, SciLifeLab\, Tomtebodavägen 23\, Solna\, Sweden
CATEGORIES:Event
ORGANIZER;CN="SciLifeLab Event":MAILTO:events@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20211215T130000
DTEND;TZID=Europe/Stockholm:20211215T170000
DTSTAMP:20260404T001445
CREATED:20211019T142541Z
LAST-MODIFIED:20211215T092421Z
UID:10000470-1639573200-1639587600@www.scilifelab.se
SUMMARY:Symposium on the ABC study: Biomarkers of Clinical Relevance – The ABC Risk Scores in Cardiovascular Diseases (CANCELLED)
DESCRIPTION:NOTE! Due to the current situation with the pandemic\, in combination with several of the invited speakers being ill\, this symposia has unfortunately been cancelled. The symposia will take place during the spring of 2022 and more details will come regarding a date and venue \n\n\n\n\n\n\n\nIn the ABC Risk Score project new tools for precision medicine in cardiovascular diseases have been developed. At this half-day symposium achievements obtained within the project will be presented and discussed. The ABC Risk Score project has been financed for 5 years by the Swedish Foundation for Strategic Research. \n\n\n\nThe symposium is free of charge\, including coffee and some light refreshments. For attending the coffee break and evening mingle\, please register by December 8. \n\n\n\nOrganizers\n\n\n\nAgneta Siegbahn: SciLifeLab\, Uppsala University\, department of Medical Sciences and Uppsala Clinical Research Center (UCR)  Lars Lind\, Jonas Oldgren and Lars Wallentin:  Uppsala University\, department of Medical Sciences and Uppsala Clinical Research Center (UCR) \n\n\n\n\n\n\n\n\nREGISTRATION\n\n\n\nPROGRAM
URL:https://www.scilifelab.se/event/symposium-on-the-abc-study-biomarkers-of-clinical-relevance-the-abc-risk-scores-in-cardiovascular-diseases/
LOCATION:Fåhræussalen\, Rudbecklaboratoriet\, Dag Hammarskjölds väg 20\, Uppsala\, -\, Sweden
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20211216T130000
DTEND;TZID=Europe/Stockholm:20211216T140000
DTSTAMP:20260404T001445
CREATED:20210903T123014Z
LAST-MODIFIED:20211202T135817Z
UID:10000437-1639659600-1639663200@www.scilifelab.se
SUMMARY:Campus Solna Seminar Series: Halva Ozlem Altay and Erik Samuelsson
DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an  initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 13:00-13:50 and following current regulations\, they will be broadcast via zoom. \n\n\n\n \n\n\n\nThis week\n\n\n\nProfound Effects of Combined Metabolic Activators on Metabolic Diseases.Halva Ozlem Altay (Adil Mardinoglu\, alpha 6)  \n\n\n\n \n\n\n\nUsing Spatial Transcriptomics to Profile Tissue Architecture in Glioblastoma and Diffuse Midline GliomaErik Samuelsson (Mats Nilsson\, gamma 4) \n\n\n\nRegistration\n\n\n\nRegister to receive the zoom-link. The same zoom link applies for all Campus Solna Seminar Series\, i.e. only one registration is necessary.
URL:https://www.scilifelab.se/event/campus-solna-seminar-series-halva-ozlem-altay-and-erik-samuelsson/
CATEGORIES:Community
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220110T091500
DTEND;TZID=Europe/Stockholm:20220110T120000
DTSTAMP:20260404T001445
CREATED:20220104T120442Z
LAST-MODIFIED:20220104T124039Z
UID:10000503-1641806100-1641816000@www.scilifelab.se
SUMMARY:Data Driven Life Science Seminars at Gothenburg University - Precision medicine and diagnostics
DESCRIPTION:Welcome to attend the first open\, digital seminar as part of the recruitment process given by the top candidates for the two group leader positions in data driven life science (DDLS) at University of Gothenburg. \n\n\n\nThe SciLifeLab and Wallenberg National Program for Data-Driven Life Science (DDLS) is a 12-year initiative funded with a total of 3.1 billion SEK from the KAW.  \n\n\n\n\n\n\n\nRead more about the Seminar
URL:https://www.scilifelab.se/event/data-driven-life-science-seminars-fellows-at-gothenburg-university-precision-medicine-and-diagnostics/
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/01/Bild1-e1641298402677.jpg
ORGANIZER;CN="Data-Driven Life Science @ SciLifeLab":MAILTO:ddls@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220113T100000
DTEND;TZID=Europe/Stockholm:20220113T121500
DTSTAMP:20260404T001445
CREATED:20220104T123540Z
LAST-MODIFIED:20220104T123818Z
UID:10000504-1642068000-1642076100@www.scilifelab.se
SUMMARY:Data Driven Life Science Seminars at Gothenburg University - Epidemiology and infection biology
DESCRIPTION:Welcome to attend the second open\, digital seminar as part of the recruitment process given by the top candidates for the two group leader positions in data-driven life science (DDLS) at University of Gothenburg. \n\n\n\nThe SciLifeLab and Wallenberg National Program for Data-Driven Life Science (DDLS) is a 12-year initiative funded with a total of 3.1 billion SEK from the KAW.  \n\n\n\n\n\n\n\nRead more about the Seminar
URL:https://www.scilifelab.se/event/data-driven-life-science-seminars-at-gothenburg-university-epidemiology-and-infection-biology/
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/01/Bild1-e1641298402677.jpg
ORGANIZER;CN="Data-Driven Life Science @ SciLifeLab":MAILTO:ddls@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220117T080000
DTEND;TZID=Europe/Stockholm:20220121T170000
DTSTAMP:20260404T001445
CREATED:20211022T070851Z
LAST-MODIFIED:20211022T071315Z
UID:10000473-1642406400-1642784400@www.scilifelab.se
SUMMARY:NBIS workshop in Neural Nets and Deep Learning
DESCRIPTION:National course open for PhD students\, postdocs\, researchers and other employees in need of Neural networks and Deep Learning skills within all Swedish universities. \n\n\n\nImportant dates\n\n\n\nApplication opens: 2021-11-01 \n\n\n\nApplication closes: 2021-12-05 \n\n\n\nConfirmation to accepted students:  2021-12-19 \n\n\n\nResponsible teachers:  Claudio Mirabello\, Bengt Sennblad \n\n\n\nIf you do not receive information according to the above dates please contact: edu.neural-nets-deep-learning@nbis.se \n\n\n\nCourse fee\n\n\n\nA course fee* of 2200 SEK will be invoiced to accepted participants. This includes lunches\, coffee and snacks. \n\n\n\n*Please note that NBIS cannot invoice individuals \n\n\n\nCourse content\n\n\n\nThis course will give an introduction to the concept of Neural Networks (NN) and Deep Learning. \n\n\n\nTopics covered will include: \n\n\n\nNN building blocks\, including concepts such as neurons\, activation functions\, loss functions\, gradient descent and back-propagationConvolutional Neural NetworksRecursive Neural NetworksAutoencodersBest practices when designing NNs\n\n\n\nLearning Outcomes\n\n\n\nUpon completion of this course\, you will be able to: \n\n\n\nDistinguish the concepts of “Artificial Intelligence”\, “Machine Learning”\, “Neural Networks”\, “Deep Learning”Distinguish between different types of learning (e.g. supervised\, unsupervised\, reinforcement) and recognise which applies to their own problemDistinguish between linear and non-linear approaches and recognise which is best suited for application to their own problemDescribe what a feed-forward neural network (FFNN) is\, along with its components (neurons\, layers\, weights\, bias\, activation functions\, cost functions)Explain how training of a FFNN works from a mathematical point of view (gradient descent\, learning rate\, backpropagation)Execute with pen and paper a few steps of training of a very simple FFNN modelTell the difference between a shallow and a deep networkExplain broadly how different NN architectures are wired and how they workImplement and apply the most appropriate architecture to a given problem/datasetAnalyze training curves and prediction outputs to evaluate if the training has been successfulDebug possible issues with the training and suggest changes to fix themExplain the difference between training\, validation and testingDefine what overfitting is from a mathematical point of view\, and what issues it causesIdentify what constitutes good practices of dataset design and how to avoid introducing information leakage or other biases when building their own datasets\n\n\n\n\n\n\n\n\nCOURSE INFORMATION\n\n\n\nAPPLICATION\n\n\n\n\n\n\n\n\nEntry requirements\n\n\n\nRequired for being able to follow the course and complete the computer exercises: \n\n\n\nFamiliarity with Unix/LinuxAbility to bring your own laptop with Python and Jupyter Notebooks  installed for the practical exercisesProgramming/scripting experience in Python (e.g. having attended the NBIS workshop in basic Python or equivalent)Basic experience of statistics and mathematics (e.g. having attended the NBIS workshop Introduction to Biostatistics and Machine Learning or equivalent)\n\n\n\nDesired \n\n\n\nYou have experience of working with Jupyter NotebooksYou have a necessity  to work with large datasets (e.g. thousands of samples)\n\n\n\nDue to limited space the course can accommodate a maximum of 25 participants. If we receive more applications\, participants will be selected based on several criteria. Selection criteria include correct entry requirements\, motivation to attend the course as well as gender and geographical balance.
URL:https://www.scilifelab.se/event/nbis-workshop-in-neural-nets-and-deep-learning/
LOCATION:Navet\, SciLifeLab Uppsala\, SciLifeLab Uppsala\, BMC C11\, Husargatan 3\, Uppsala\, 75237\, Sweden
CATEGORIES:Course
ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220118T083000
DTEND;TZID=Europe/Stockholm:20220118T113000
DTSTAMP:20260404T001445
CREATED:20220110T151719Z
LAST-MODIFIED:20220112T123959Z
UID:10000505-1642494600-1642505400@www.scilifelab.se
SUMMARY:DDLS Fellow candidate seminar at Umeå University
DESCRIPTION:Adjacent to the recruitment process for a group leader position in Data-Driven Life Science (DDLS) in precision medicine and diagnostics at Umeå University\, the top candidates will present at a seminar.  \n\n\n\nThe seminar will be held on Zoom\, January 18 2022 08:30 – 11:30. \n\n\n\n \n\n\n\nRead more\n\n\n\n\n\n\n\n \n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nRead more
URL:https://www.scilifelab.se/event/ddls-fellow-candidate-seminar-at-umea-university/
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2021/06/DDLS-landing-page-images.png
ORGANIZER;CN="Data-Driven Life Science @ SciLifeLab":MAILTO:ddls@scilifelab.se
LOCATION:https://www.scilifelab.se/event/ddls-fellow-candidate-seminar-at-umea-university/
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220118T100000
DTEND;TZID=Europe/Stockholm:20220223T160000
DTSTAMP:20260404T001445
CREATED:20211101T090147Z
LAST-MODIFIED:20211101T090730Z
UID:10000477-1642500000-1645632000@www.scilifelab.se
SUMMARY:Digital image analysis for scientific applications – focus MAX IV\, 5-8 ECTS credits
DESCRIPTION:The course aims at giving doctoral students and researchers from different disciplines a sufficient understanding of digital image processing and analysis techniques to solve basic image analysis problems. The content of the course includes methods especially suitable for MAX IV data. The course will also offer an introduction to several freely available software tools (e.g. CellProfiler\, ImageJ\, and ilastik)\, preparing the participants to start using computerized image analysis in their research. By inviting researchers interested in using MAX IV and image analysis\, and allowing them to work on data of similar type but produced elsewhere\, the course has the added value of attracting more researchers to MAX IV and also increasing the awareness of future possibilities giving a head-start in defining and planning MAX IV projects. The basics of image analysis are general\, but by designing examples and hands-on computer exercises based on published data from other world-leading X-ray facilities\, we can prepare participants for the future. After the course\, the participants will not only have a better understanding of the underlying theory and possibilities of image analysis but also be better at designing their experiments in the MAX IV environment. \n\n\n\nCourse Period\n\n\n\nJanuary-February 2022 \n\n\n\nCourse information\n\n\n\nLectures and computer exercises will be given online in English on Tuesdays and Wednesdays\, starting from January 18 to February 23 (weeks 3-8)\, from 10 am to 4 pm.The course will be given remotely via Zoom and Studium \n\n\n\nMore information can be found here \n\n\n\n \n\n\n\nECTS credits\n\n\n\n8 ECTS for the whole course (including a short project)\, 5 ECTS for a shorter version \n\n\n\nApplication\n\n\n\nApplication from course participants should be sent to Damian Matuszewski\, damian.matuszewski@it.uu.se\, not later than 15 December 2021.
URL:https://www.scilifelab.se/event/digital-image-analysis-for-scientific-applications-focus-max-iv-5-8-ects-credits/
LOCATION:Online event via Zoom
CATEGORIES:Course
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220118T110000
DTEND;TZID=Europe/Stockholm:20220118T115000
DTSTAMP:20260404T001445
CREATED:20220114T110350Z
LAST-MODIFIED:20220114T110649Z
UID:10000507-1642503600-1642506600@www.scilifelab.se
SUMMARY:SciLifeLab Uppsala PhD&Postdoc seminar series
DESCRIPTION:Welcome to the SciLifeLab Uppsala PhD&Postdoc seminar series! \n\n\n\n \n\n\n\nFor this occasion the speakers will be: \n\n\n\n1. Inês Neves\, Phd student at the Neuro-Oncology group (Lene Uhrbom’s lab)\, Dept. of Immunology\, Genetics and Pathology \n\n\n\nTitle:Stages and transitions of glioblastoma development from a defined glial cell of origin. \n\n\n\nSummary:Tumor cells displaying OPC identity are common in pediatric brain tumors such as medulloblastoma and malignant glioma. In pediatric malignant glioma it is in fact the most frequent cell state found but the significance of this is not known. We have recently shown that neonatal OPCs can serve as cell of origin for experimental malignant glioma and that these tumors were relevant representatives of pediatric high-grade glioma. The purpose of this project is to investigate the role of OPC identity and how it is connected with OPC origin in pediatric malignant glioma with the goal to understand the processes driving tumor malignancy and uncover tumor cell-specific targetable mechanisms. \n\n\n\n2. Viktor Ek\, PhD student at Mikael Sellin’s group\, Dept. of Medical Biochemistry and Microbiology (IMBIM) \n\n\n\nTitle:Bacterium-bacterium heterogeneity. \n\n\n\nSummary:Bacteria come in all shapes and sizes. Their morphology is no accident\, and often visually similar bacteria have similar lifestyles. Salmonella are gut bacteria that cause severe health problems throughout developing countries. The species Salmonella Typhimurium (S.Tm) are rod-shaped\, single-cell pathogens that swim around using appendages known as flagella. They use this ability to spread out locally and search for fitting sites for infection\, but turn off such virulence machinery to save energy during e.g. replication. In this seminar\, we will discuss our study of a previously overlooked phenotype of S.Tm that we call “doublets”\, a mid-division and simultaneously swimming category. Intriguingly\, this transient phenotype is highly capable of infecting cells. Doublets also swim straighter than the other bacteria\, likely because of their size\, increasing the overall search area for fitting invasion sites for the community. Such divergence contributes to an advantageous diversification of the S.Tm population – and serves as a healthy reminder of individual-to-individual differences in general populations. \n\n\n\nPlease join us using this Zoom link: https://uu-se.zoom.us/j/62510720849
URL:https://www.scilifelab.se/event/scilifelab-uppsala-phdpostdoc-seminar-series/
CATEGORIES:Community
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220119T100000
DTEND;TZID=Europe/Stockholm:20220119T140000
DTSTAMP:20260404T001445
CREATED:20220113T114132Z
LAST-MODIFIED:20220113T120355Z
UID:10000506-1642586400-1642600800@www.scilifelab.se
SUMMARY:DDLS Fellow candidates seminar at the Swedish Museum of Natural History (NRM)
DESCRIPTION:The Swedish Museum of Natural History (NRM) is hiring a tenure-track researcher in Data-Driven Life Science (DDLS)\, within the field of biodiversity and evolution. \n\n\n\nThe research position is funded by the SciLifeLab and Wallenberg National Program for Data-Driven Life Science (DDLS)\, which is a 12-year initiative funded with a total of 3.1 billion SEK from the Knut and Alice Wallenberg Foundation (for more details\, see www.scilifelab.se/data-driven). The DDLS Fellows will be recruited as independent group leaders at the respective host institution\, and will have the opportunity to link up with other local research groups as well as the within the national DDLS programme. \n\n\n\nAs a part of the recruitment process\, the top-ranked candidates for the NRM position will give digital seminars that are open for the general public.  \n\n\n\n \n\n\n\nSchedule of presentations: \n\n\n\n10:00 Nicolas Dussex \n\n\n\n10:30 Michael Westbury \n\n\n\n11:00 Tom van der Valk \n\n\n\n11:30 Break \n\n\n\n13:00 Elin Videvall \n\n\n\n13:30 Benjamin Vernot \n\n\n\n \n\n\n\nOrganizers: NRM DDLS Recruitment Committee
URL:https://www.scilifelab.se/event/ddls-fellow-candidates-seminar-at-the-swedish-museum-of-natural-history-nrm/
LOCATION:Online event via Zoom
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220124T080000
DTEND;TZID=Europe/Stockholm:20220127T170000
DTSTAMP:20260404T001445
CREATED:20211202T114921Z
LAST-MODIFIED:20220330T154213Z
UID:10000496-1643011200-1643302800@www.scilifelab.se
SUMMARY:SciLifeLab Infrastructure outreach week
DESCRIPTION:SciLifeLab is a national infrastructure within life science available for researchers in academia\, healthcare\, and industry. We provide access to a range of nationally unique and internationally competitive technologies in molecular biosciences that can be used to address questions in a broad range of life science disciplines. During four sessions we will highlight our capabilities to provide services within the research areas 1) drug discovery\, 2) precision medicine\, 3) ecosystem surveillance and evolutionary biology and 4) structural biology. We will present relevant technologies available at SciLifeLab and illustrate their utilization by user cases related to the topic of each session.  \n\n\n\n \n\n\n\n  \n\n\n\n\nREGISTER HERE\n\n\n\n\n\n\n\n\nProgram\n\n\n\nJan 24 at 13:00-15:00Is your idea ready for drug discovery?\n\n\n\nNo matter whether your answer is yes or no\, the national infrastructures for target- and drug discovery can help you move your project forward. This session introduces you to the capabilities and technologies spanning the entire range from high-throughput genetic and chemical screening for target identification via drug design using medicinal chemistry and molecular biology to preclinical proof of concept before pre-clinical development. Former and current users will give you a user’s perspective of the infrastructures. \n\n\n\nTarget audience: We welcome all Swedish academic and research groups and industrial users to hear about our platform activities! \n\n\n\nSciLifeLab units presented: Drug Discovery and Development Platform (DDD)\, Chemical Biology Consortium Sweden (CBCS)\, CRISPR Functional Genomics (CFG)\, Chemical Proteomics \n\n\n\n \n\n\n\nJan 25 at 11:00 – 13:00Towards enabling Precision and Translational Medicine\n\n\n\nThis session will cover:– Identification of biomarkers in biofluids and tissues.– Identification of therapeutical targets. Target audience: clinicians and preclinical researchers at Universities and University Hospitals. Startups\, biotech companies\, biotech companies and scientists interested in precision medicine are also welcome.SciLifeLab units presented: Clinical Proteomics and Immunology\, NGI\, CBGE\, Eukaryotic single cell genome\, NBIS\, Spatial and single cell biology\, Clinical Genomics \n\n\n\nJan 26 at 10:00 – 12:00Evolution\, molecular ecology and environment\n\n\n\nThis session will cover: multiple aspects of evolution\, molecular ecology and environment \n\n\n\nTarget audience: Scientists with interest in the fields of evolution\, molecular ecology and environmentSciLifeLab units presented: NGI\, IMT-UmU/Cryo-EM\, Bioinformatics\, Microbial Single Cell Genomics\, Ancient DNA\, and additional units. \n\n\n\nJan 27 at 10:00 – 12:00Visualising life at the molecular level\n\n\n\nThis session will cover:– Protein studies at atomic level– Protein localization in tissue/cells– Protein interactions and dynamics\,Target audience: Structural Biologist (also from industry)\, Preclinical researchers\, and Cell biologists.  SciLifeLab units presented: ISB\, Cellular and Molecular imaging\, NBIS\, Spatial and Single cell biology \n\n\n\n \n\n\n\n\n\nView detailed program
URL:https://www.scilifelab.se/event/scilifelab-infrastructure-outreach-week/
LOCATION:Online event via Zoom
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2021/12/Artboard-1.jpg
ORGANIZER;CN="SciLifeLab Event":MAILTO:events@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220127T084500
DTEND;TZID=Europe/Stockholm:20220127T170000
DTSTAMP:20260404T001445
CREATED:20211130T143050Z
LAST-MODIFIED:20211130T160953Z
UID:10000492-1643273100-1643302800@www.scilifelab.se
SUMMARY:11th Symposium on Pharmaceutical Profiling in Drug Discovery and Development
DESCRIPTION:Uppsala University’s Department of Pharmacy hosts the 11th Pharmaceutical Profiling meeting on Thursday\, January 27\, 2022\, at The Humanities Theatre\, English Park Campus\, Uppsala. \n\n\n\nJanuary 27\, 2022The Humanities Theatre\, English Park Campus\, UppsalaConfirmed speakers \n\n\n\nKathryn A. Whitehead (Carnegie Mellon University\, US)Ola Engkvist (AstraZeneca\, Sweden)Carolina Wählby (Uppsala University\, Sweden)Samir EL Andaloussi (Karolinska Institutet\, Sweden)Ola Spjuth (Uppsala University\, Sweden)Pär Matsson (University of Gothenburg\, Sweden)Annabelle Biscans (AstraZeneca\, Sweden)\n\n\n\nWe highly encourage all participants to bring a scientific poster.
URL:https://www.scilifelab.se/event/11th-symposium-on-pharmaceutical-profiling-in-drug-discovery-and-development/
LOCATION:Humanities Theater\, Engelska parken\, Uppsala\, 75238\, Sweden
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220127T130000
DTEND;TZID=Europe/Stockholm:20220127T140000
DTSTAMP:20260404T001445
CREATED:20220124T151708Z
LAST-MODIFIED:20220124T151804Z
UID:10000516-1643288400-1643292000@www.scilifelab.se
SUMMARY:Campus Solna Seminar Series
DESCRIPTION:Welcome to the Campus Solna Seminar Series – an initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between the alpha and gamma buildings. The format will be 2 short 15 min talks (1 speaker from alpha and 1 from gamma)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-12:50 and in Air&Fire\, SciLifeLab Stockholm. \n\n\n\n\n\n\nJoel Hallgren\n\n\n\nKristina Jonas-group\, gamma 5 \n\n\n\nTo stay or to leave? – (p)ppGpp signaling determines bacterial lifestyle decisions during distinct starvation conditions
URL:https://www.scilifelab.se/event/61525/
LOCATION:Online event via Zoom
CATEGORIES:Community
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220128T170000
DTEND;TZID=Europe/Stockholm:20220128T180000
DTSTAMP:20260404T001445
CREATED:20211025T140613Z
LAST-MODIFIED:20220127T120109Z
UID:10000474-1643389200-1643392800@www.scilifelab.se
SUMMARY:FAIRPoints 
DESCRIPTION:Location: Online via Zoom\n\n\n\nSee in your time zone \n\n\n\nFAIRPoints is an event series bringing together people across the research ecosystem to discuss\, highlight\, and share pragmatic solutions to making FAIR a reality.  \n\n\n\nFAIRPoints in collaboration with GoFAIR US\, SDSC\, AGU\, and SciLifeLab Data Centre aims to enhance community building and knowledge sharing across diverse geographic and domain areas in order to cultivate researchers’ engagement in FAIR on a global scale. \n\n\n\n\nOur main aims are to: \n\n\n\nProvide a platform for FAIR conversations featuring the latest developments from the communityHighlight use-cases and how-to-approaches addressing FAIR implementation from researchers and research support staff perspectivesCapture and share the discussion outcomes in pragmatic\, bite-sized lesson material with integrated schemasMake FAIR more accessible to broader audiences Explore FAIR practices from a global perspective\n\n\n\n\n\n\n\n\nThis event series will feature the work done around FAIR implementation across our collaborating organizations\, cultivate engagement and relationships between researchers on all levels\, data service providers\, policy-\, decision makers and organization members in response to rapid scientific progress\, as well as foster the development of impactful and more globally connected FAIR solutions.  \n\n\n\nTo that end\, we would like to welcome all those interested in supporting our activities to join our task force and contribute to our working groups\, including: \n\n\n\nDesigning of machine-actionable training materialCommunity building and outreach Technical support Hosting/Co-hosting virtual events Accessibility and inclusionPartnership and collaboration\n\n\n\nIf you are interested in hearing more and in joining our efforts as we move forward towards launching the event series\, please register for our event to receive the Zoom link! \n\n\n\nTwitter: @FAIR_Points \n\n\n\n\n\n\n\nContact: SciLifeLab Data Centre\, datacentre@scilifelab.se \n\n\n\nRegister here
URL:https://www.scilifelab.se/event/fairpoints/
LOCATION:Online event via Zoom
CATEGORIES:Event
ORGANIZER;CN="SciLifeLab Data Centre":MAILTO:datacentre@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220202T090000
DTEND;TZID=Europe/Stockholm:20220204T170000
DTSTAMP:20260404T001445
CREATED:20211109T084020Z
LAST-MODIFIED:20211111T104547Z
UID:10000482-1643792400-1643994000@www.scilifelab.se
SUMMARY:Single Cell RNA-seq data analysis
DESCRIPTION:This workshop will introduce the best practice bioinformatics methods for processing and analyses of single cell RNA-seq data via a series of online lectures and computer practicals. The total course duration is 45 hours\, including the online lectures (15 hours) to be watched in advance and practical workshop that will be held on site in Stockholm (30 hours). The practical session is divided into both analysis overview and a Bring-Your-Own-Data (BYOD) day. \n\n\n\nDates \n\n\n\n2022-02-02 to 2022-02-04 on site (9:00 – 17:00) \n\n\n\nVenue \n\n\n\nRooms Air & Fire \n\n\n\nTomtebodavägen 23b\, SciLifeLab Solna\, Stockholm\, Sweden \n\n\n\nImportant dates \n\n\n\nApplication open: 2021-11-05 \n\n\n\nApplication deadline: 2021-12-16 \n\n\n\nCourse Leaders \n\n\n\nPaulo Czarnewski & Åsa Björklund \n\n\n\nContact information for questions regarding the course \n\n\n\nCourse Website\n\n\n\nEmail: edu.sc@nbis.se \n\n\n\nCourse feeThis workshop has a fee of 1700kr and will be invoiced to the selected participants *. Applications without complete invoice information will not be considered. Course fees cover all coffee breaks\, all lunches and 1 course dinner. \n\n\n\n* Please note that NBIS cannot invoice individuals. \n\n\n\nTopics covered will include \n\n\n\nOverview of the current scRNAseq technologiesBasic overview of pipelines for processing raw reads into expression valuesQuality control and normalizationDimensionality reduction techniquesData integration and batch correctionDifferential gene expressionClustering techniquesCelltype predictionTrajectory inference analysisAnalysis of spatial transcriptomics datasetsComparison of different analysis pipelines such as Seurat\, Scran and Scanpy\n\n\n\nWho can apply? \n\n\n\nThis is a national course. The course is open for PhD students\, postdocs\, group leaders and core facility staff within all Swedish universities. We do accept application from other countries\, but give priority to applicants from Swedish universities prior to applicants from industry and academics from other countries. \n\n\n\nPlease note that NBIS training events do not provide any formal university credits. The training content is estimated to correspond to a certain number of credits\, however the estimated credits are just guidelines. If formal credits are crucial\, the student needs to confer with the home department before submitting a course application in order to establish whether the course is valid for formal credits or not. \n\n\n\nPractical exercises will be performed using either R or Python\, so we only accept students that fulfill the entry requirements (see below). NBIS offers \n\n\n\nEntry requirements \n\n\n\nRequired for being able to follow the course and complete the practial exercises: \n\n\n\nYour own laptop with the following specs:\n\nOperating system Win10\, OS X or Linux\nAt least 8 GB of RAM.\nOperating system Win10\, OS X or Linux\nAt least 30 GB of free storage\nHave full access to your computer (admin permissions).\n\nYou are used to scripting in:\n\nUNIX command line (bash)\nEither R and/or Python\n\nYou already understand the basis of NGS technologiesYou are able to analyze bulk RNA-sequencing dataInstructions on installation will be sent by email to accepted participants.\n\n\n\nDue to limited space the course can accommodate maximum of 25 participants. If we receive more applications\, participants will be selected based on several criteria. Selection criteria include correct entry requirements\, motivation to attend the course as well as gender and geographical balance. \n\n\n\nLink to application \n\n\n\nRead more and register
URL:https://www.scilifelab.se/event/single-cell-rna-seq-data-analysis/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Course
ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220204T090000
DTEND;TZID=Europe/Stockholm:20220204T093000
DTSTAMP:20260404T001445
CREATED:20220117T164155Z
LAST-MODIFIED:20220117T171054Z
UID:10000508-1643965200-1643967000@www.scilifelab.se
SUMMARY:IMPRESS-Norway and implementing precision cancer medicine in Norway
DESCRIPTION:On February 4\, oncologist\, and Head of Research at Division of Cancer Medicine at Oslo University Hospital Professor Åslaug Helland will give a talk about her mission with the clinical precision medicine study IMPRESS-Norway that she co-founded in 2021. She is also a Professor at the University of Oslo. Åslaug is the PI of the IMPRESS-N study with the goal of “Improving public cancer care by implementing precision medicine in Norway\,” and it is a national clinical study for patients with advanced cancer after standard therapy\, with multiple Norwegian healthcare partners as well as industry collaborators. The effort is preparing Norway towards the many sustainable future benefits precision medicine has to offer for future healthcare solutions (Read more). \n\n\n\nregister to receive zoom link\n\n\n\nBiography \n\n\n\n\n\n\n\nÅslaug Helland\, MD\, PhD\, is a Group leader at the Institute for Cancer Research\, Norwegian Radium Hospital (NRH)\, Oslo\, Norway\, and Senior oncologist\, Dept of Oncology\, Oslo University Hospital\, Radiumhospital. She is also Professor at the University of Oslo Institute of Clinical Medicine. Åslaug obtained her MD degree in 1995\, and later her PhD in Medicine in 2000\, from the University of Oslo. She pursued her postdoctoral studies during 2003/2004 at Stanford University\, and in 2007/2008 as a visiting scientist at the Peter MacCallum Cancer Centre in Melbourne Australia\, adding to her international experience. Åslaugs research group focuses on translational studies on solid tumours\, with a special interest in pancreatic cancers\, lung cancers\, ovary cancers and colorectal cancers. They perform whole genome analyses on patient material\, aiming at identifying predictive and prognostic biomarkers as well as more targeted analyses for the identification of pathways and immune mechanisms of interest. By increasing the understanding of the underlying biology of tumour development\, they aim at improving cancer patient care. She furthermore led several clinical and translational studies in lung cancer. \n\n\n\nÅslaug is the PI of the IMPRESS-Norway study with the goal of “Improving public cancer care by implementing precision medicine in Norway\,” and it is a national clinical study for patients with advanced cancer after standard therapy. During 2019\, Oslo Cancer Cluster hosted a series of workshops with public and private stakeholders in cancer with the goal to accelerate the implementation of cancer precision medicine in Norway. The initial idea for IMPRESS emerged in one of these workshops. A dedicated team at Oslo University Hospital quickly turned it into a national effort together with colleagues at university hospitals across Norway. \n\n\n\nIMPRESS involves the active support of leading global pharmaceutical companies that will provide the study drugs and contribute with per patient fees. Public funding will help to ensure this innovative study paves the way for more cancer clinical trials in Norway. National infrastructure for precision diagnostics is needed and is currently being set up at all Norwegian cancer hospitals. Cancer patients who are eligible for clinical trials can soon be tested and selected based on their specific genetic profile. \n\n\n\n\n\n\n\n\n“Clinical Talks” has been renewed for yet another exciting\, innovative\, and enlightening season. This season will focus on sustainable innovations within Life Sciences\, that have the potential to contribute to a better climate friendly future for our future generations. Also new this year is that the seminar is co-organized in a collaboration between SciLifeLab and KI Innovations . \n\n\n\nSeason 5\, will be held September 2021 until March 2022 with scheduled Talks\, during Friday mornings 09-09:30 am via ZOOM (with some time-zone friendly adjustments for our international speakers). Each session consists of a talk given by our invited speaker followed by Q&A. The seminar is an open educational seminar series for our ever-expanding Life Science community.
URL:https://www.scilifelab.se/event/impress-norway-and-implementing-precision-cancer-medicine-in-norway/
LOCATION:Online event via Zoom
CATEGORIES:Event
ORGANIZER;CN="Clinical Talks":MAILTO:precisionmedicine@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220210T130000
DTEND;TZID=Europe/Stockholm:20220210T140000
DTSTAMP:20260404T001445
CREATED:20220202T083930Z
LAST-MODIFIED:20220208T084758Z
UID:10000519-1644498000-1644501600@www.scilifelab.se
SUMMARY:Campus Solna Seminar Series
DESCRIPTION:Welcome to the Campus Solna Seminar Series – an initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between the alpha and gamma buildings. The format will be 2 short 15 min talks (1 speaker from alpha and 1 from gamma)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 13:00-13:50 and following current regulations\, they will be broadcast via zoom. \n\n\n\nMalaria in Liver-Space and Time – Spatial Transcriptomics to investigate host-pathogen interactionsFranziska Hildebrandt (Joakim Lundeberg \, alpha 3)  \n\n\n\n You two are sisters\, aren’t you? – predicting cell families in-vivo without labelingMarcel Tarbier (Vicente Pelechano\, gamma 5) \n\n\n\n \n\n\n\n \n\n\n\n\n\n\n\n \n\n\n\nRegister to receive the zoom-link. The same zoom link applies for all Campus Solna Seminar Series\, i.e. only one registration is necessary. \n\n\nPlease select a valid form
URL:https://www.scilifelab.se/event/campus-solna-seminar-series/
LOCATION:Online event via Zoom
CATEGORIES:Community
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220211T140000
DTEND;TZID=Europe/Stockholm:20220211T160000
DTSTAMP:20260404T001445
CREATED:20220121T155806Z
LAST-MODIFIED:20220121T155807Z
UID:10000511-1644588000-1644595200@www.scilifelab.se
SUMMARY:BioImage Analysis support - Call4Help
DESCRIPTION:Every 1st week of the month (mainly on Tuesdays\, but there might be exceptions) the BioImage Informatics Facility together with microscopy expert Sylvie Le Guyader (LCI\, Karolinska Institutet) organizes a Call4Help session. The aim is to offer combined expertise towards microscopy and bioimage analysis. All researchers from Swedish institutes can participate. \n\n\n\nThe ideal timepoint to join the Call4Help session is when a researcher has performed pilot experiments and has tried out first analysis approaches – but before having recorded hundreds of images. Combining BIIF’s expertise in BioImage Analysis with microscopy expertise we can discuss ways to record the images that allow analysis afterwards. We will discuss different analysis approaches using mainly open-source software (Fiji\, CellProfiler\, QuPath\, Ilastik\, KNIME)\, but also commercial systems\, if needed (Imaris). \n\n\n\nThe Call4Help session format has been introduced to the BioImage Analysis community by NEUBIAS and ScopeM. \n\n\n\nHow to participate? \n\n\n\nWe prefer if you prepare a short presentation and upload it together with some example images according to the steps 1 and 2 below. This makes it easier for us when we have to prioritize between projects and allows us to prepare for the meeting. But if time permits\, we can also accept participants without this info. \n\n\n\nStep1: \n\n\n\nPrepare a short presentation (5-7 min)  – use the following template for your presentation: \n\n\n\nhttp://bit.ly/BIIF_C4H_slideTemplate \n\n\n\nSlide template by NEUBIAS/ScopeM \n\n\n\nStep2: \n\n\n\na) Upload your presentation \n\n\n\nUpload your presentation to a drive of your choice. You can also use our Call4Help google drive. Note that files shared on our Call4Help drive will be available to everyone until the session is over. \n\n\n\nhttp://bit.ly/BIIF_C4H_Drive \n\n\n\nb) Upload example images for testing. \n\n\n\nUpload example images for testing either to the drive of your choice or our Call4Help google drive above. \n\n\n\nhttp://bit.ly/BIIF_C4H_Drive \n\n\n\nc) Register by filling out the registration form: \n\n\n\nhttp://bit.ly/BIIF_C4H_Registration \n\n\n\nStep 3: \n\n\n\nJoin the zoom-session. \n\n\n\nIf your problem is selected for presentation\, you will get a time-slot of 30 – 60 minutes within the session. \n\n\n\nWhat are the Deadlines \n\n\n\nSubmission of a problem and upload of example data: Friday the week before the session. \n\n\n\nNotification about participation: The day before the session. \n\n\n\nNext Call4Help session \n\n\n\nFriday\, February 11\, 2022\, 14:00-16:00. Deadline for application: Tuesday\, February 8\, 2022.
URL:https://www.scilifelab.se/event/bioimage-analysis-support-call4help/
LOCATION:Online event via Zoom
CATEGORIES:Event
ORGANIZER;CN="Bioimage Informatics Unit":MAILTO:biif@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220217T130000
DTEND;TZID=Europe/Stockholm:20220217T140000
DTSTAMP:20260404T001445
CREATED:20220207T102257Z
LAST-MODIFIED:20220207T102504Z
UID:10000521-1645102800-1645106400@www.scilifelab.se
SUMMARY:Campus Solna PhD&Postdoc Seminar Series - Sherwin Chan
DESCRIPTION:Welcome to the Campus Solna Seminar Series – an initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between the alpha and gamma buildings. The format will be 2 short 15 min talks (1 speaker from alpha and 1 from gamma)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 13:00-13:50 and following current regulations\, they will be broadcast via zoom. \n\n\n\nFebruary 17\n\n\n\ntRNA sequencing in Plasmodium falciparum reveals proteome evolution driven by tRNA availabilitySherwin Chan (Ola Larsson\, gamma 5) \n\n\n\n \n\n\n\nRegister to receive the zoom-link. The same zoom link applies for all Campus Solna Seminar Series\, i.e. only one registration is necessary. \n\n\nPlease select a valid form
URL:https://www.scilifelab.se/event/campus-solna-seminar-series-2/
LOCATION:Online event via Zoom
CATEGORIES:Community
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220218T090000
DTEND;TZID=Europe/Stockholm:20220218T093000
DTSTAMP:20260404T001445
CREATED:20220117T165253Z
LAST-MODIFIED:20220117T171034Z
UID:10000509-1645174800-1645176600@www.scilifelab.se
SUMMARY:Spearheading the cardiovascular precision medicine with innovative medical tools
DESCRIPTION:On February 18\, we have invited Dr. Tero-Pekka Alastalo\, to give a talk about his experience with co-founding the precision medicine company Blueprint Genetics in 2012. What started out as a technology development spinout from Stanford University\, quickly grew to a global genetic testing company with >200 employees (acquired by Quest Diagnostics in 2020). With a solid background in pediatric cardiology and cardiovascular research\, Tero-Pekka recently joined CardioSignal by Precordior as the Chief Medicinal Officer and General Manager of the US operations. During his talk\, he will share his insights on how technology can revolutionize the medical methodology for a sustainable future and better use of resources. \n\n\n\nRegister to receive zoom link\n\n\n\n\n\n\n\nTero-Pekka Alastalo\, MD\, PhD\, is the Chief Medical Officer and General Manager of the US operations at CardioSignal by Precordior. He also co-founded Blueprint Genetics in 2012. Tero-Pekka obtained his MD\, PhD degree at the University of Turku in 2001. After 6 years of fellowships in pediatrics at the University of Turku\, he pursued his postdoctoral studies at Stanford University in basic research on cardiovascular biology and disease in the Marlene Rabinovitch Lab during 2007-2009. Upon returning to Finland\, he joined the University of Helsinki as a PI studying molecular and genetic mechanisms of cardiovascular diseases\, as well as a pediatric cardiology fellowship. In 2012 he joined forces with fellow Stanford postdoc Samuel Myllykangas to co-found Blueprint Genetics and held various management roles including Chief Medical Officer until September 2021\, when he joined CardioSignal. \n\n\n\nBlueprint Genetics is a genetic testing company focused on inherited diseases. With a patient-first mindset\, the company delivers high-quality genetic testing to the global clinical community (<4000 clinicians) across 15 medical specialties. Blueprint Genetics is based in Helsinki and Seattle\, with a customer base spanning over 70 countries. By combining a state-of-the-art laboratory process\, the latest sequencing technology\, AI empowered data-crunching tools and techniques\, world-class professionals\, and a holistic customer experience approach\, genetic knowledge is introduced to mainstream healthcare. Blueprint Genetics was acquired by Quest Diagnostics in 2020. \n\n\n\nCardioSignal by Precordior is a scientific forerunner in the field of cardiac motion sensing\, especially chest micro-rotation via micro-electromechanical sensors (MEMS) with some 30 scientific articles published in the area\, including in the prestigious journals Circulation and Nature Scientific Reports. The academic research studying the heart via chest micro-motions started at the University of Turku in January 2012. Continuing this work\, scientists at Precordior work today in close collaboration with researchers and cardiologists at several universities and hospitals. CardioSignal offers an easy and reliable detection of heart disease to people worldwide at an affordable price\, with an application that is accurate and reliable enough to serve physicians\, while easy and accessible enough to empower consumers. This is achieved via a smartphone application that transforms a phone into a device that can detect atrial fibrillation and\, in the future\, other heart conditions as well. \n\n\n\n\n\n\n\n\n\n“Clinical Talks” has been renewed for yet another exciting\, innovative\, and enlightening season. This season will focus on sustainable innovations within Life Sciences\, that have the potential to contribute to a better climate friendly future for our future generations. Also new this year is that the seminar is co-organized in a collaboration between SciLifeLab and KI Innovations . \n\n\n\nSeason 5\, will be held September 2021 until March 2022 with scheduled Talks\, during Friday mornings 09-09:30 am via ZOOM (with some time-zone friendly adjustments for our international speakers). Each session consists of a talk given by our invited speaker followed by Q&A. The seminar is an open educational seminar series for our ever-expanding Life Science community.
URL:https://www.scilifelab.se/event/spearheading-the-cardiovascular-precision-medicine-with-innovative-medical-tools/
LOCATION:Online event via Zoom
CATEGORIES:Event
ORGANIZER;CN="Clinical Talks":MAILTO:precisionmedicine@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220224T130000
DTEND;TZID=Europe/Stockholm:20220224T140000
DTSTAMP:20260404T001445
CREATED:20220207T102537Z
LAST-MODIFIED:20220207T102718Z
UID:10000522-1645707600-1645711200@www.scilifelab.se
SUMMARY:Campus Solna PhD&Postdoc Seminar Series - Hailey Sounart and Mohammadreza Mohaghegh
DESCRIPTION:Welcome to the Campus Solna Seminar Series – an initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between the alpha and gamma buildings. The format will be 2 short 15 min talks (1 speaker from alpha and 1 from gamma)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 13:00-13:50 and following current regulations\, they will be broadcast via zoom. \n\n\n\nFebruary 24\n\n\n\nDual spatially resolved transcriptomics for SARS-CoV-2 host-pathogen colocalization studies in humans Hailey Sounart (Stefania Giacomello\,  alpha 3) \n\n\n\nToMExO: Simultaneous inference of mutual exclusivity and progression patterns among oncogenesMohammadreza Mohaghegh (Jens Lagergren\, gamma 6) \n\n\n\n \n\n\n\nRegister to receive the zoom-link. The same zoom link applies for all Campus Solna Seminar Series\, i.e. only one registration is necessary. \n\n\nPlease select a valid form
URL:https://www.scilifelab.se/event/campus-solna-phdpostdoc-seminar-series-hailey-sounart-and-mohammadreza-mohaghegh/
LOCATION:Online event via Zoom
CATEGORIES:Community
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220224T132500
DTEND;TZID=Europe/Stockholm:20220225T150000
DTSTAMP:20260404T001445
CREATED:20220216T093937Z
LAST-MODIFIED:20220222T154735Z
UID:10000529-1645709100-1645801200@www.scilifelab.se
SUMMARY:DDLS Fellow positions at Stockholm University
DESCRIPTION:Welcome to attend the open\, on-line presentations given as part of the recruitment process for the two Tenure-Track positions as Assistant Professors in Data-Driven Cell and Molecular Biology at Stockholm University\, 24 February\, 13.25–15.20 och 25 February\, 13.25–15.00. \n\n\n\nFull program and zoom link HERE \n\n\n\n\n\n\n\n\n\n\n\nProgramme\n\n\n\nFebruary 24\n\n\n\n13.25–13.40    Jonathan Desponds Inference and prediction of transcription dynamics: application to the developmental pathways and the selection of T-cells \n\n\n\n13.45–14.00    Fabian Froehlich Mechanistic Models for Data-Driven Drug Sensitivity Prediction \n\n\n\n14.05–14.20    Juliette Griffie Characterising cellular processes at the nanoscale: beyond the pretty picture \n\n\n\n14.25–14.40    Jakub Wiktor Live cell microscopy reveals homology search mechanism  \n\n\n\n14.45–15.00    Michael Ratz Next-generation lineage tracing of brain development \n\n\n\n15.05–15.20    Severin SchinkTowards a quantitative understanding of ageing in cellular model systems \n\n\n\nFebruary 25\n\n\n\n13.25–13.40    Kimberly Siletti Molecular architecture of the mammalian brain    \n\n\n\n13.45–14.00    Linas Urnavicius Multidisciplinary study of molecular mechanisms governing cellular organization \n\n\n\n14.05–14.20    Axel OlinBlood-Based Assays for Human Systems Immunology \n\n\n\n14.25–14.40    Cheng ZhangSystems biology in liver disease \n\n\n\n14.45–15.00    Sofie Ährlund-Richter The ins and outs of the Prefrontal Cortex – Large-scale connectivity mapping and functional imaging of the Prefrontal Cortex \n\n\n\nChairing the presentations and the recruitment process is Professor Catarina Rydin. Acting as external reviewers for the recruitment are Professors Dagmar Iber\, Janet Thornton and Andreas Tolias. 
URL:https://www.scilifelab.se/event/ddls-fellow-position-at-stockholm-university/
LOCATION:Online event via Zoom
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/02/image-6.png
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220224T150000
DTEND;TZID=Europe/Stockholm:20220224T160000
DTSTAMP:20260404T001445
CREATED:20220210T162445Z
LAST-MODIFIED:20220215T171729Z
UID:10000525-1645714800-1645718400@www.scilifelab.se
SUMMARY:FAIRPoints Presents- Step by step publishing with ResearchEquals
DESCRIPTION:Chris Hartgerink\n\n\n\nSpeakers bio.  \n\n\n\nFAIRPoints is an event series highlighting pragmatic measures developed by the community towards the implementation of the FAIR (Findable\, Accessible\, Interoperable\, Reusable) data principles\, in collaboration with GoFAIR US\, SDSC\, AGU\, and SciLifeLab Data Centre.  \n\n\n\nIn this talk\, we will explore the open source publishing platform ResearchEquals\, where you can publish your entire research journey\, step by step. With this\, researchers get the autonomy to make all their research outputs findable\, accessible\, interoperable\, and reusable. In this presentation\, Chris Hartgerink shows how you can get started with this new publishing system and how you can help shape its future development.  \n\n\n\n\n\nSee Event in your Time Zone  \n\n\n\n\n\nLocation: Online via Zoom \n\n\n\n\n\n \n\n\n\n\n\n\n\nRegister Here\n\n\n\n\n\nSign up for future events here \n\n\n\n\n\n\nTweets by FAIR_Points
URL:https://www.scilifelab.se/event/fairpoints-researchequals/
LOCATION:Online event via Zoom
CATEGORIES:Event
ORGANIZER;CN="SciLifeLab Data Centre":MAILTO:datacentre@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220228T080000
DTEND;TZID=Europe/Stockholm:20220228T170000
DTSTAMP:20260404T001445
CREATED:20220228T142928Z
LAST-MODIFIED:20220228T142929Z
UID:10000541-1646035200-1646067600@www.scilifelab.se
SUMMARY:Campus Solna PhD&Postdoc Seminar Series – Wensi Zhu and Luca Andronico
DESCRIPTION:Welcome to the Campus Solna Seminar Series – an initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between the alpha and gamma buildings. The format will be 2 short 15 min talks (1 speaker from alpha and 1 from gamma)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-12:50 and in Air&Fire\, SciLifeLab Stockholm. \n\n\n\n\n\n\nJoel Hallgren\n\n\n\nKristina Jonas-group\, gamma 5 \n\n\n\nTo stay or to leave? – (p)ppGpp signaling determines bacterial lifestyle decisions during distinct starvation conditions
URL:https://www.scilifelab.se/event/campus-solna-phdpostdoc-seminar-series-wensi-zhu-and-luca-andronico/
CATEGORIES:Community
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220301T090000
DTEND;TZID=Europe/Stockholm:20220301T120000
DTSTAMP:20260404T001445
CREATED:20220121T155935Z
LAST-MODIFIED:20220121T155936Z
UID:10000512-1646125200-1646136000@www.scilifelab.se
SUMMARY:BioImage Analysis support - Call4Help
DESCRIPTION:Every 1st week of the month (mainly on Tuesdays\, but there might be exceptions) the BioImage Informatics Facility together with microscopy expert Sylvie Le Guyader (LCI\, Karolinska Institutet) organizes a Call4Help session. The aim is to offer combined expertise towards microscopy and bioimage analysis. All researchers from Swedish institutes can participate. \n\n\n\nThe ideal timepoint to join the Call4Help session is when a researcher has performed pilot experiments and has tried out first analysis approaches – but before having recorded hundreds of images. Combining BIIF’s expertise in BioImage Analysis with microscopy expertise we can discuss ways to record the images that allow analysis afterwards. We will discuss different analysis approaches using mainly open-source software (Fiji\, CellProfiler\, QuPath\, Ilastik\, KNIME)\, but also commercial systems\, if needed (Imaris). \n\n\n\nThe Call4Help session format has been introduced to the BioImage Analysis community by NEUBIAS and ScopeM. \n\n\n\nHow to participate? \n\n\n\nStep1: \n\n\n\nPrepare a short presentation (5-7 min)  – use the following template for your presentation: \n\n\n\nhttp://bit.ly/BIIF_C4H_slideTemplate \n\n\n\nSlide template by NEUBIAS/ScopeM \n\n\n\nStep2: \n\n\n\na) Upload your presentation \n\n\n\nUpload your presentation to a drive of your choice. You can also use our Call4Help google drive. Note that files shared on our Call4Help drive will be available to everyone until the session is over. \n\n\n\nhttp://bit.ly/BIIF_C4H_Drive \n\n\n\nb) Upload example images for testing. \n\n\n\nUpload example images for testing either to the drive of your choice or our Call4Help google drive above. \n\n\n\nhttp://bit.ly/BIIF_C4H_Drive \n\n\n\nc) Register by filling out the registration form: \n\n\n\nhttp://bit.ly/BIIF_C4H_Registration \n\n\n\nStep 3: \n\n\n\nJoin the zoom-session. \n\n\n\nIf your problem is selected for presentation\, you will get a time-slot of 30 – 60 minutes within the session. \n\n\n\nWhat are the Deadlines \n\n\n\nSubmission of a problem and upload of example data: Friday the week before the session. \n\n\n\nNotification about participation: The day before the session. \n\n\n\nNext Call4Help session \n\n\n\nTuesday\, March 1\, 2022\, 9.00-12.00. Deadline for application: Friday\, February 25\, 2022.
URL:https://www.scilifelab.se/event/bioimage-analysis-support-call4help-2/
LOCATION:Online event via Zoom
CATEGORIES:Event
ORGANIZER;CN="Bioimage Informatics Unit":MAILTO:biif@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220301T130000
DTEND;TZID=Europe/Stockholm:20220301T164500
DTSTAMP:20260404T001445
CREATED:20220216T091610Z
LAST-MODIFIED:20220216T095241Z
UID:10000528-1646139600-1646153100@www.scilifelab.se
SUMMARY:DDLS fellow position (BUL) at Uppsala University
DESCRIPTION:Welcome to listen to the seminars and discussions of the candidates for the DDLS Fellow position (BUL) on Biodiversity and Evolution at Uppsala University \n\n\n\n\n\n\n\n\n\nSchedule: \n\n\n\n13:00-13:45     Tobias Andermann\, University of Gothenburg\, Biodiversity research in the era of big data \n\n\n\n14:00-14:45    Mariana Pires Braga\, Swedish University of Agricultural Sciences\, Ancestral networks and the evolution of species interactions \n\n\n\n15:00-15:45     Quentin Geissmann\, University of British Columbia\, Using Open Hardware and Deep Learning to Study the Ecology of   Insect Sleep and Circadian Rhythm \n\n\n\n16:00-16:45    Wouter van der Bijl\, University of British Columbia\, The evolution of sexually dimorphic traits: selection\, constraint and   architecture \n\n\n\nZOOM LINK to the seminar
URL:https://www.scilifelab.se/event/ddls-fellow-position-bul-at-uppsala-university/
LOCATION:Online event via Zoom
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/02/DDLSEco_green.png
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220302T140000
DTEND;TZID=Europe/Stockholm:20220302T153000
DTSTAMP:20260404T001445
CREATED:20220224T150156Z
LAST-MODIFIED:20220302T091116Z
UID:10000538-1646229600-1646235000@www.scilifelab.se
SUMMARY:TissUUmaps 3: Interactive visualization and quality assessment of large-scale spatial omics
DESCRIPTION:HDCA Seminar Series 2022 | TissUUmaps \n\n\n\nSpeakers: \n\n\n\nCarolina Wählby and Christophe Avenel \n\n\n\nWe present TissUUmaps\, browser-based tool for GPU-accelerated visualization and interactive exploration of tens of millions of datapoints overlaying tissue samples. Users can visualize markers and regions\, explore spatial statistics and quantitative analyses of tissue morphology\, and assess the quality of decoding in situ transcriptomics data. TissUUmaps provides instant multi-resolution image viewing\, can be customized\, shared\, and also integrated in Jupyter Notebooks. It is also possible to directly connect spatial markers with markers in feature space\, such as UMAP plots\, to interactively relate feature space with physical space. We envision TissUUmaps to contribute to broader dissemination and flexible sharing of large-scale spatial omics data\, and it is already being used for sharing of data from the Human Developmental Lung Cell Atlas\, as shared via the TissUUmaps gallery: https://tissuumaps.github.io/gallery/. \n\n\n\nRegistration\n\n\n\n– \n\n\n\nHuman developmental cell atlas (HDCA) is the Swedish effort within the human cell atlas (HCA)\, one of the largest international scientific projects. The project aim is to create a comprehensive molecular atlas of human prenatal development at the molecular resolution using state-of-the-art multi-omic technologies such as single-cell RNA-seq\, Spatial Transcriptomics\, in situ sequencing in order to provide deeper insight into how variations and deviations contribute to health and disease. \n\n\n\nThe HDCA Seminar Series 2022 invites you to join us on a journey of early human organogenesis of several organs at the single-cell and spatial resolution. Seminars will be held at SciLifeLab Gamma building on Wednesdays at 14:00 or 15:00 and also via Zoom. After each seminar\, we will have up to 30 min round up discussions with the speaker on how you can contribute to the atlas!  \n\n\n\nWarm Welcome!
URL:https://www.scilifelab.se/event/tissuumaps-3-interactive-visualization-and-quality-assessment-of-large-scale-spatial-omics/
LOCATION:Gamma 2 Lunchroom\, SciLifeLab\, Tomtebodavägen 23\, Solna\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/02/logo_hdca2-1.png
ORGANIZER;CN="The Human Developmental Cell Atlas":MAILTO:hdca-sweden@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220303T130000
DTEND;TZID=Europe/Stockholm:20220303T140000
DTSTAMP:20260404T001445
CREATED:20220221T140139Z
LAST-MODIFIED:20220222T132051Z
UID:10000533-1646312400-1646316000@www.scilifelab.se
SUMMARY:Campus Solna PhD&Postdoc Seminar Series  Stefano Papazian and Lennart van der Goten
DESCRIPTION:Welcome to the Campus Solna Seminar Series – an initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between the alpha and gamma buildings. The format will be 2 short 15 min talks (1 speaker from alpha and 1 from gamma)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-12:50 and in Air&Fire\, SciLifeLab Stockholm. \n\n\n\n\n\n\nJoel Hallgren\n\n\n\nKristina Jonas-group\, gamma 5 \n\n\n\nTo stay or to leave? – (p)ppGpp signaling determines bacterial lifestyle decisions during distinct starvation conditions
URL:https://www.scilifelab.se/event/campus-solna-phdpostdoc-seminar-series-stefano-papazian-and-lennart-van-der-goten/
LOCATION:Online event via Zoom
CATEGORIES:Community
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220304T150000
DTEND;TZID=Europe/Stockholm:20220304T170000
DTSTAMP:20260404T001445
CREATED:20220208T151254Z
LAST-MODIFIED:20220208T151255Z
UID:10000523-1646406000-1646413200@www.scilifelab.se
SUMMARY:Diversity\, Equity & Inclusion Committee - 1 year anniversary
DESCRIPTION:Diversity\, Equity and Inclusion at SciLifeLab (DEIS) welcomes you to a celebration of one year of grass-roots events organizing and community building! \n\n\n\nWith thanks to all who’ve participated in our events the past year — and eagerness to meet those who will contribute in future — please join us:When: 15.00 Friday 4 MarchWhere: SciLifeLab Air/Fire \n\n\n\nWhat: Refreshments\, networking\, and an opportunity to contribute to future development in diversity\, equity\, and inclusion in our scientific community
URL:https://www.scilifelab.se/event/diversity-equity-inclusion-committee-1-year-anniversary/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Community
END:VEVENT
END:VCALENDAR