BEGIN:VCALENDAR VERSION:2.0 PRODID:-//SciLifeLab - ECPv6.15.18//NONSGML v1.0//EN CALSCALE:GREGORIAN METHOD:PUBLISH X-WR-CALNAME:SciLifeLab X-ORIGINAL-URL:https://www.scilifelab.se X-WR-CALDESC:Events for SciLifeLab REFRESH-INTERVAL;VALUE=DURATION:PT1H X-Robots-Tag:noindex X-PUBLISHED-TTL:PT1H BEGIN:VTIMEZONE TZID:Europe/Stockholm BEGIN:DAYLIGHT TZOFFSETFROM:+0100 TZOFFSETTO:+0200 TZNAME:CEST DTSTART:20220327T010000 END:DAYLIGHT BEGIN:STANDARD TZOFFSETFROM:+0200 TZOFFSETTO:+0100 TZNAME:CET DTSTART:20221030T010000 END:STANDARD BEGIN:DAYLIGHT TZOFFSETFROM:+0100 TZOFFSETTO:+0200 TZNAME:CEST DTSTART:20230326T010000 END:DAYLIGHT BEGIN:STANDARD TZOFFSETFROM:+0200 TZOFFSETTO:+0100 TZNAME:CET DTSTART:20231029T010000 END:STANDARD BEGIN:DAYLIGHT TZOFFSETFROM:+0100 TZOFFSETTO:+0200 TZNAME:CEST DTSTART:20240331T010000 END:DAYLIGHT BEGIN:STANDARD TZOFFSETFROM:+0200 TZOFFSETTO:+0100 TZNAME:CET DTSTART:20241027T010000 END:STANDARD END:VTIMEZONE BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20230424T090000 DTEND;TZID=Europe/Stockholm:20230428T153000 DTSTAMP:20260403T224403 CREATED:20230223T130931Z LAST-MODIFIED:20230223T131154Z UID:10000820-1682326800-1682695800@www.scilifelab.se SUMMARY:NBIS/ELIXIR-SE Tools for Reproducible Research - ONLINE DESCRIPTION:NBIS / ELIXIR-SE course is open for PhD students\, postdocs\, group leaders and core facility staff interested in making their computational analysis more reproducible. International applications are welcome\, but we will give approximately half of the participant slots to applicants from Swedish universities at minimum\, due to the national role NBIS plays in Sweden. \n\n\n\nResponsible teachers: Erik Fasterius\, John Sundh \n\n\n\nContact information: edu.trr@nbis.se \n\n\n\n\n\n\n\n\n\nApplication\n\n\n\n\n\nCourse website\n\n\n\n\n\n\n\nImportant dates\n\n\n\nApplication open: Feb 27\, 2023 \n\n\n\nApplication deadline: Mar 31\, 2023 \n\n\n\nConfirmation to accepted participants: Apr 7\, 2023 \n\n\n\n\n\n\n\nCourse fee\n\n\n\nThis online training event has no fee. However\, if you accept a position at the workshop and do not participate (no-show) you will be invoiced 2\,000 SEK.*Please note that NBIS cannot invoice individuals \n\n\n\n\n\n\n\nCourse description\n\n\n\nOne of the key principles of proper scientific procedure is the act of repeating an experiment or analysis and being able to reach similar conclusions. Published research based on computational analysis\, e.g. bioinformatics or computational biology\, have often suffered from incomplete method descriptions (e.g. list of used software versions); unavailable raw data; and incomplete\, undocumented and/or unavailable code. This essentially prevents any possibility of attempting to reproduce the results of such studies. The term “reproducible research” has been used to describe the idea that a scientific publication based on computational analysis should be distributed along with all the raw data and metadata used in the study\, all the code and/or computational notebooks needed to produce results from the raw data\, and the computational environment or a complete description thereof. \n\n\n\nReproducible research not only leads to proper scientific conduct but also provides other researchers the access to build upon previous work. Most importantly\, the person setting up a reproducible research project will quickly realize the immediate personal benefits: an organized and structured way of working. The person that most often has to reproduce your own analysis is your future self! \n\n\n\n\n\n\n\nCourse content\n\n\n\nTopics covered \n\n\n\n\nGood practices for data analysis\n\n\n\nVersion control and collaborative code development\n\n\n\nPackage and environment management\n\n\n\nWorkflow management\n\n\n\nDocumentation and reporting\n\n\n\nContainerized computational environments\n\n\n\n\n\n\n\n\nLearning outcomesBy the end of the course the student will be able to: \n\n\n\n\nOrganize and structure computational projects\n\n\n\nTrack changes and collaborate on code using Git\n\n\n\nInstall packages and manage software environments using Conda\n\n\n\nStructure computational steps into workflows with Snakemake and Nextflow\n\n\n\nCreate automated reports and document their analyses with RMarkdown and Jupyter\n\n\n\nPackage and distribute computational environments using Docker and Singularity\n\n\n\n\n\n\n\n\nEntry requirements\n\n\n\nRequired for being able to follow the course and to complete computer exercises: \n\n\n\n\nFamiliarity with using the terminal (e.g. be familiar with commands such as ls\, cd\, touch\, mkdir\, pwd\, wget\, man\, etc.)\n\n\n\nA computer with a webcam\n\n\n\nYou will be asked to install the video conferencing software zoom (https://zoom.us/) to be able to participate in the course\n\n\n\nSome knowledge in R and/or python is beneficial but not strictly required\n\n\n\n\n\n\n\n\nSelection criteria\n\n\n\nThe course can accommodate 20 participants. Selection criteria include correct entry requirements\, motivation to attend the course as well as gender and geographical balance. Academic affiliated registrants are prioritized prior to participants from the industry.  \n\n\n\nPlease note that NBIS training events do not provide any formal university credits. The training content is estimated to correspond to a certain number of credits\, however the estimated credits are just guidelines. If formal credits are crucial\, the student needs to confer with the home department before submitting a course application in order to establish whether the course is valid for formal credits or not. URL:https://www.scilifelab.se/event/nbis-elixir-se-tools-for-reproducible-research-online-3/ LOCATION:Online event via Zoom CATEGORIES:Course ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20230424T090000 DTEND;TZID=Europe/Stockholm:20230428T170000 DTSTAMP:20260403T224403 CREATED:20230118T132842Z LAST-MODIFIED:20230118T133136Z UID:10000790-1682326800-1682701200@www.scilifelab.se SUMMARY:Introduction to Biostatistics and Machine Learning DESCRIPTION:National course open for PhD students\, postdocs\, researchers and other employees in need of biostatistical and machine learning skills within all Swedish universities. The course is geared towards life scientists wanting to be able to understand and use basic statistical methods. It would also suit those already applying biostatistical methods but have never got a chance to reflect on and truly grasp the basic statistical concepts\, such as the commonly misinterpreted p-value. \n\n\n\n \n\n\n\nImportant dates\n\n\n\nApplication open: now \n\n\n\nApplication closes: 2023-02-24 \n\n\n\nConfirmation to accepted students:  2023-03-10 \n\n\n\nResponsible teachers:  Olga Dethlefsen\, Eva Freyhult \n\n\n\nIf you do not receive information according to the above dates please contact olga.dethlefsen@nbis.se\, eva.freyhult@nbis.se \n\n\n\n\n\n\n\n\n\nLink to Application\n\n\n\n\n\nCourse website\n\n\n\n\n\n\n\n\n\nCourse fee\n\n\n\nA course fee* of 2000 SEK will be invoiced to accepted participants. The fee includes lunches\, coffee and snacks. \n\n\n\n*Please note that NBIS cannot invoice individuals \n\n\n\n\n\n\n\nCourse content\n\n\n\n\nProbability theory\n\n\n\nHypothesis testing and confidence intervals\n\n\n\nResampling\n\n\n\nLinear regression methods\n\n\n\nIntroduction to generalized linear models\n\n\n\nModel evaluation\n\n\n\nUnsupervised learning incl. clustering and dimension reduction methods\n\n\n\nSupervised learning incl. classification\n\n\n\n\n\n\n\n\nEducation\n\n\n\nIn this course we focus on an active learning approach. The course participants are expected to do some pre-course reading and exercises\, corresponding up to 40h studying. The education consists of teaching blocks alternating between lectures\, group discussions\, live coding sessions etc. \n\n\n\n\n\n\n\nEntry requirements\n\n\n\n\nBasic R programming skills (check your skills by taking our self-assessment test)\n\n\n\nBYOL (bring your own laptop) with R and RStudio installed\n\n\n\nNo prior biostatistical knowledge is assumed\, only basic math skills (pre-course studying materials will be available upon course acceptance)\n\n\n\n\n\n\n\n\nThe course can accommodate a maximum of 25 participants. If we receive more applications\, participants will be selected based on several criteria. Selection criteria include correct entry requirements\, motivation to attend the course as well as gender and geographical balance. URL:https://www.scilifelab.se/event/introduction-to-biostatistics-and-machine-learning-2/ LOCATION:Navet\, SciLifeLab Uppsala\, SciLifeLab Uppsala\, BMC C11\, Husargatan 3\, Uppsala\, 75237\, Sweden CATEGORIES:Course ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20230424T123000 DTEND;TZID=Europe/Stockholm:20230425T143000 DTSTAMP:20260403T224403 CREATED:20230301T152415Z LAST-MODIFIED:20230412T152145Z UID:10000825-1682339400-1682433000@www.scilifelab.se SUMMARY:Three Decades of Genomics:  From PCR to Precision Medicine DESCRIPTION:Ann-Christine Syvänen moved from Helsinki\, Finland to Uppsala in 1998. In 2001 she was appointed professor in Molecular Medicine at the Department of Medical Sciences at Uppsala University. After 20 years as a research group leader and director of the SNP&SEQ Technology Platform\, followed by five years as senior professor at Uppsala University\, she retired in 2022. This open symposium brings together her former colleagues from Finland\, as well as coworkers and former students in Uppsala to celebrate the progress in Human Genomics during the past three decades and future prospects for Genomics in Precision Medicine. \n\n\n\n\n\n\nOrganizers: Ann-Christine Syvänen\, Jessica Nordlund\, Ulrika Liljedahl \n\n\n\nContact for questions: Ulrika Liljedahl\, Ulrika.Liljedahl@medsci.uu.se \n\n\n\n\n\n\n\n\n\n\n\n\nRegistration\n\n\n\nRegistration is mandatory\, deadline April 17\, 2023 \n\n\n\nRegister here\n\n\n\n\n\n\n\nThis event is sponsored by: \n\n\n\n\n\n\n\n\n\nKAW\n\n\n\n\n\nSciLifeLab\n\n\n\n\n\nNavinci\n\n\n\n\n\nNGI\n\n\n\n\n\n\n\n\n\nProgram overview\n\n\n\nFull program\, printable Pdf \n\n\n\n \n\n\n\nDay 1\, Monday April 24\, 2023\n\n\n\n12.30-14.30 Session I: First decade of genomics\, and before. Chair Ann-Christine Syvänen \n\n\n\nAnn-Christine Syvänen\, Prof. em. Dept of Medical Sciences\, Uppsala University\, Sweden \n\n\n\nHans Söderlund\, Prof. em. Technical Research Centre of Finland (VTT) \n\n\n\nAntti Sajantila\, Dept of Forensic Medicine\, University of Helsinki\, Finland \n\n\n\nAarno Palotie\, The Broad Institute of MIT and Harvard\, Cambridge\, USA & Institute for Molecular Medicine\, (FIMM)\, University of Helsinki\, Finland \n\n\n\n15.00-17.00 Session II: Disease genetics and genomics. Chair Jessica Nordlund \n\n\n\nIvo Gut\, Centro Nacional de Analisis Genomico\, Barcelona\, Spain \n\n\n\nLars Rönnblom\, Dept of Medical Sciences\, Uppsala University\, Sweden \n\n\n\nGunnel Nordmark \, Dept of Medical Sciences\, Uppsala University\, Sweden \n\n\n\nTuuli Lappalainen\, New York Genome Centre\, USA\, SciLifeLab and KTH Royal Institute of Technology\, Stockholm\, Sweden \n\n\n\n\n\n\n\nDay 2\, Tuesday April 25\, 2023\n\n\n\n9.30-11.30 Session III: Translational genomics and drug development. Chair Gunnel Nordmark \n\n\n\nOlli Kallioniemi\, SciLifeLab and Dept of Oncology & Pathology\, Karolinska Institutet\, Stockholm\, Sweden \n\n\n\nAnna Kiialainen\, Genentech Research and Early Development\, Hoffmann-La Roche\, Basel\, Switzerland \n\n\n\nMaria Lagerström\, Biopharmaceuticals R&D\, AstraZeneca \n\n\n\nJessica Nordlund\, Dept of Medical Sciences\, Uppsala University\, Sweden \n\n\n\nHåkan Melhus\, Dept of Medical Sciences\, Uppsala University\, Sweden \n\n\n\n12.30-14.30 Session IV: Genomics technology: past\, present and future. Chair Lars Feuk \n\n\n\nUlf Landegren\, Dept of Immunology\, Genetics and Pathology Uppsala University\, Sweden \n\n\n\nElin Grundberg\, Children’s Mercy Hospital and University of Missouri\, Kansas City\, USA \n\n\n\nMats Nilsson\, SciLifeLab and Dept of Biochemistry and Biophysics\, Stockholm University \n\n\n\nDavid Klenerman\, University of Cambridge\, United Kingdom \n\n\n\nAnn-Christine Syvänen\, Prof. em. Dept of Medical Sciences\, Uppsala University\, Sweden URL:https://www.scilifelab.se/event/three-decades-of-genomics-from-pcr-to-precision-medicine/ LOCATION:BMC\, The Svedberg Lecture Hall (B8)\, Husargatan 3\, Uppsala\, 752 37\, Sweden CATEGORIES:Event ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2023/03/ResearchLogo-002-e1677683793531.jpg END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20230424T151500 DTEND;TZID=Europe/Stockholm:20230424T161500 DTSTAMP:20260403T224403 CREATED:20230331T130042Z LAST-MODIFIED:20230331T130044Z UID:10000848-1682349300-1682352900@www.scilifelab.se SUMMARY:[The Svedberg seminar] - Copy-Number Changes During Experimental Evolution in Caenorhabditis elegans: Rate\, Fitness Effects and Context-Dependence DESCRIPTION:VAISHALI KATJU \, Professor \n\n\n\nProgram in Evolutionary Biology \n\n\n\nDepartment of Ecology & Genetics \n\n\n\nUppsala University \n\n\n\n\n\n\n\n\n\n\n\nBio\n\n\n\nProf. Katju is an evolutionary geneticist whose research combines the power of experimental evolution with the model nematode C. elegans and high-throughput genomics to address fundamental questions in biology and evolution regards the rates\, fitness effects and evolutionary dynamics of spontaneous mutations. Her current and future research program is focused on investigating (i) the consequences of spontaneous mutation under varying intensity of selection\, (ii)mitochondrial evolution and the genetic architecture of mitonuclear interactions and (iii) the transcriptional and functional consequences of copy-number changes during adaptation. \n\n\n\nD. Katju earned her Ph.D. in Evolutionary Genetics from Indiana University-Bloomington\, USA in 2004 under the supervision of Dr. Michael Lynch. Following the completion of a National Science Foundation funded Postdoctoral Research Fellowship in Biological Informatics\, she served as a faculty member (Assistant and Associate Professor) in the Department of Biology at the University of New Mexico from 2007-2015. From 2015-2022\, she was a faculty member (Associate and full Professor) in the Department of Veterinary Integrative Biosciences in the College of Veterinary Medicine at Texas A&M University. In 2022\, she joined the Department of Ecology and Genetics at Uppsala University as a Professor. \n\n\n\n \n\n\n\nCopy-Number Changes During Experimental Evolution in Caenorhabditis elegans: Rate\, Fitness Effects and Context-Dependence\n\n\n\n \n\n\n\nThe genomic era has revealed that gene copy-number differences due to gene duplications and deletions are rampant in natural populations. Yet\, base substitutions as a mutational class have dominated the field of evolutionary biology as the main contributor to genetic variation leading to evolution. Herein\, I briefly explore the history of the field\, from the neo-Darwinian synthesis through Ohno’s canonical model for the evolution of gene duplicates and its failure to encapsulate the full complexity of the duplication process. Lastly\, I present results from three long-term experimental evolution experiments in Caenorhabditis elegans that investigate fundamental properties of copy-number variants (CNVs)\, including (i) direct estimates of their rates of origin\, (ii) evidence that CNVs constitute a common mechanism of adaptive genetic change during compensatory evolution\, and (iii) evidence that duplications and deletions of highly transcribed genes are detrimental to fitness and a role for selection against an increase in transcript abundance. \n\n\n\nHost: Leif Andersson leif.andersson@imbim.uu.se UU URL:https://www.scilifelab.se/event/the-svedberg-seminar-copy-number-changes-during-experimental-evolution-in-caenorhabditis-elegans-rate-fitness-effects-and-context-dependence/ LOCATION:BMC Room C8:301\, Husargatan 3\, Uppsala\, Sweden CATEGORIES:Event ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/02/Picture1-The-Svedberg.png ORGANIZER;CN="The Svedberg Seminar Series":MAILTO:thesvedberg@scilifelab.uu.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20230425T150000 DTEND;TZID=Europe/Stockholm:20230425T180000 DTSTAMP:20260403T224403 CREATED:20230316T092531Z LAST-MODIFIED:20230420T064935Z UID:10000837-1682434800-1682445600@www.scilifelab.se SUMMARY:Opening of Coalescence; Scientific research through an artist’s lens DESCRIPTION:Welcome to the opening of the exhibition Coalescence; Scientific research through an artist’s lens at SciLifeLab’s Solna campus. \n\n\n\nThe exhibition will feature work by 16 artists from the Royal Institute of Art\, created in individual collaborations with 33 researchers from SciLifeLab. \n\n\n\nThe collaborations were set up as a new program at SciLifelab\, started by SciLifeLab researcher Max Frankel\, to connect the artistic and scientific communities in Stockholm. \n\n\n\nThere will be temporary artwork\, talks\, and drinks both in Air&Fire and in the Delta lobby. The exhibition in the Delta lobby is open to the public during SciLifeLab’s typical hours\, from April 26th until May 8th. \n\n\n\n \n\n\n\nPlease register if you’d like to attend the opening. The event is free of charge. \n\n\n\nRegistration\n\n\n\nNews: Scientific research through an artist’s lens – first meeting URL:https://www.scilifelab.se/event/opening-of-coalescence-scientific-research-through-an-artists-lens/ LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden CATEGORIES:Event END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20230427T080000 DTEND;TZID=Europe/Stockholm:20230428T170000 DTSTAMP:20260403T224403 CREATED:20230331T125157Z LAST-MODIFIED:20230331T125455Z UID:10000849-1682582400-1682701200@www.scilifelab.se SUMMARY:Nordic Precision Medicine Forum DESCRIPTION:Following the success over the past 6 year of our annual Nordic Precision Medicine Forum we are excited to announce that in 2023 we have a new venue and TWO NEW EVENTS. This allows us to convene a broader group of experts\, from more disciplines\, across all of the key stakeholders\, in one place. \n\n\n\nAs Precision Medicine initiatives around the world gather pace\, the Nordic countries are in an enviable position when it comes to joining all the dots. The link between digital health\, omics technologies\, artificial intelligence and data means that yet more collaboration is required to ensure the success of precision medicine. As demonstrated by organisations such as SciLifeLab\, the collaborative efforts of healthcare\, research\, industry and patient organisations is really starting to bear fruit. \n\n\n\nThe lines between the different disciplines involved in precision medicine are often blurred\, so to bring all of the people together we have created three unique meetings which allow our attendees to move freely between different areas of interest. \n\n\n\nThrough a combination of keynotes\, presentations\, panel discussions\, breakouts and networking opportunities\, you will have access to those who are shaping the digital health revolutions across the region\, under one roof\, over two days. \n\n\n\nPlacing all the experts from the Precision Medicine ecosystem in one place at one time allows for the very essence of what many say is the key to precision medicine – collaboration. We look forward to seeing you in Stockholm on 27-28 April 2023. \n\n\n\nRead more\n\n\n\nWe very much hope to see you in Stockholm in April 2023! URL:https://www.scilifelab.se/event/nordic-precision-medicine-forum-2/ LOCATION:München Bryggeriet\, Torkel Knutssongatan 2\, Stockholm\, 11825\, Sweden CATEGORIES:Event END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20230427T120000 DTEND;TZID=Europe/Stockholm:20230427T130000 DTSTAMP:20260403T224403 CREATED:20230101T212646Z LAST-MODIFIED:20230420T081437Z UID:10000772-1682596800-1682600400@www.scilifelab.se SUMMARY:Campus Solna Seminar Series: Dimitris Kanellis DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nThis week:\n\n\n\n\n\n\nDimitris Kanellis\n\n\n\nJiri Bartek – alpha 5 \n\n\n\nCuET: one metabolite to kill’em all \n\n\n\n \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page. URL:https://www.scilifelab.se/event/campus-solna-seminar-series-apr-27/ LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden CATEGORIES:Community ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/09/IMG_20221103_123412496_HDR2-scaled.jpg ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20230427T150000 DTEND;TZID=Europe/Stockholm:20230427T170000 DTSTAMP:20260403T224403 CREATED:20230317T102909Z LAST-MODIFIED:20230317T113319Z UID:10000840-1682607600-1682614800@www.scilifelab.se SUMMARY:Matchmaking Event: Data Science and Medical/Clinical/Healthcare Research Project Call 2024 DESCRIPTION:Welcome to a matchmaking in SciLifeLab between Data Science and Medical/Clinical/Healthcare research at Karolinska Institutet\, KTH and Region Stockholm\, related to the Health\, Medicine and Technology (HMT) Project Call 2024 (opens on 13 April). Following the success of the event last year we invite you to participate in another matchmaking event to find research partners for the upcoming call. A key requirement to apply is that one partner is from KTH and one from Region Stockholm.  \n\n\n\nRead more URL:https://www.scilifelab.se/event/matchmaking-event-data-science-and-medical-clinical-healthcare-research-project-call-2024/ LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden CATEGORIES:Event ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2020/02/kth_logotyp_pms_2013.jpg END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20230428T150000 DTEND;TZID=Europe/Stockholm:20230428T163000 DTSTAMP:20260403T224403 CREATED:20230414T095927Z LAST-MODIFIED:20230417T065941Z UID:10000860-1682694000-1682699400@www.scilifelab.se SUMMARY:BAM Seminar: Career transition from academia to biosafety officer at Valneva DESCRIPTION:As part of our “Biology At Most” seminar series we invite speakers from all types of life science career paths. They will share their visions\, perspectives and expertise in their field in a informal environment. \n\n\n\nThe Guest is Dr. Shawon Gupta\n\n\n\n\n\n\n\nDr. Shawon Gupta is currently working as a biosafety officer at Valneva\, a multinational vaccine company based in Stockholm. Shawon carried out his PhD studies at Karolinska Institutet followed by a PostDoc at Heidelberg University and has since made a successful transition from academia to industry. During the talk\, he will share insights on his career journey\, including the challenges he faced and how he overcame them. Shawon will also discuss his current work as a biosafety officer\, giving you a glimpse in his world. \n\n\n\nThis event is mainly aimed at PhD students and Postdocs\, but researchers in all stages of their career are of course welcome to attend. Join us as we highlight real-life success stories and provide valuable insights on how to make a transition as smooth as possible. \n\n\n\nYou can join the meeting in person or via zoom (Meeting ID: 616 1985 4442). We will have time for fika and mingling after the seminar. Please register via the google form until April 25th to be considered for the fika. \n\n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page. URL:https://www.scilifelab.se/event/bam-seminar-valneva/ LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden CATEGORIES:Community ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/11/BAM.jpg ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20230502T080000 DTEND;TZID=Europe/Stockholm:20230502T170000 DTSTAMP:20260403T224403 CREATED:20230421T081435Z LAST-MODIFIED:20230421T081436Z UID:10000865-1683014400-1683046800@www.scilifelab.se SUMMARY:FIB-SEM - Imaging and Micro-manipulation DESCRIPTION:In the frame of the “SciLifeLab Site Umeå / KBC Infrastructure Seminar Series”\, the seminars will be organised every second Tuesday during spring 2023. The seminars will be held in a hybrid format IRL in Glasburen\, KBC\, and online via Zoom. Learn more about the seminar series and Schedule for Spring 2023 here. \n\n\n\nOn May 2nd\, 12:00-13:00\, SciLifeLab Site Umeå / KBC Infrastructure Seminar Series presents: \n\n\n\nFIB-SEM – Imaging and Micro-manipulation\n\n\n\nby  \n\n\n\nSara Henriksson\, Umeå Centre for Electron Microscopy (UCEM)\, Head of TEM unit\, Facility manager\, SciLifeLab contact for FIB-SEM  \n\n\n\nand \n\n\n\nCheng Choo Lee (Nikki)\, Umeå Centre for Electron Microscopy (UCEM)\, Head of SEM unit\, Facility manager \n\n\n\nRead more URL:https://www.scilifelab.se/event/fib-sem-imaging-and-micro-manipulation/ LOCATION:Glasburen Seminar Room\, Chemical Biological Centre (KBC) Building\, Umeå University\, Umeå\, 901 87\, Sweden CATEGORIES:Event ORGANIZER;CN="SciLifeLab Ume%C3%A5":MAILTO:umea@scilifelab.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20230502T080000 DTEND;TZID=Europe/Stockholm:20230502T170000 DTSTAMP:20260403T224403 CREATED:20230504T123021Z LAST-MODIFIED:20230508T072522Z UID:10000880-1683014400-1683046800@www.scilifelab.se SUMMARY:NBIS and CASP - feeling lost in data? We are here to help DESCRIPTION:In the frame of the “SciLifeLab Site Umeå / KBC Infrastructure Seminar Series”\, the seminars will be organised every second Tuesday during spring 2023. The seminars will be held in a hybrid format IRL in Glasburen\, KBC\, and online via Zoom. Learn more about the seminar series and Schedule for Spring 2023 here. \n\n\n\nOn May 16th\, 12:00-13:00\, SciLifeLab Site Umeå / KBC Infrastructure Seminar Series presents: \n\n\n\nNBIS and CASP – feeling lost in data? We are here to help! \n\n\n\nby  \n\n\n\nJeanette Tångrot\, NBIS expert and Senior research engineer at the Department of Molecular Biology \n\n\n\nand \n\n\n\nKate Bennett\, CASP platform manager and Research coordinator at the Department of Chemistry \n\n\n\n\nSign up (latest by Monday\, 15 May\, 10 a.m.) for on-site attendance to reserve your free lunch sandwich: \n\n\n\nRegister\n\n\n\nor follow online via Zoom: https://umu.zoom.us/j/63138997026 (registration is not required). \n\n\n\n\nAbstract: \n\n\n\nThe Computational Analytics Support Platform (CASP) is a data analytics service at Umeå University\, while the National Bioinformatics Infrastructure Sweden (NBIS) is a distributed national research infrastructure providing bioinformatics support\, infrastructure and training. In this seminar\, we will describe the different types of services provided by both CASP and NBIS\, helping researchers make the most out of their data. \n\n\n\nCASP is a co-funded KBC infrastructure that primarily supports\, but also trains life scientists in the analysis of experimental data using advanced data-driven tools and strategies. We focus on the analysis of data from a wide range of technologies including\, but not limited to\, downstream omics (metabolomics/proteomics)\, spectroscopy and imaging. Since the platform was launched in 2021\, CASP has supported multiple researchers across departments and faculties convert complex data into meaningful biological and chemical interpretations. \n\n\n\nNBIS is the SciLifeLab bioinformatics platform and the Swedish node in ELIXIR. NBIS has staff at six sites\, including Umeå. We provide expertise in most areas of bioinformatics\, including omics analysis\, genome assembly/annotation\, image analysis and biostatistics. We provide weekly online drop-in sessions and free consultation meetings\, as well as hands-on project support ranging from assistance with smaller tasks to long-term engagement. We also offer support in data management and systems development\, such as tools\, pipelines\, and interactive websites. In addition\, we provide both introductory and advanced training events. \n\n\n\n\nMore information about CASP: https://www.umu.se/en/research/infrastructure/computational-analytics-support-platform-casp/ \n\n\n\n NBIS: https://nbis.se/ \n\n\n\n\nRead more URL:https://www.scilifelab.se/event/nbis-and-casp-feeling-lost-in-data-we-are-here-to-help/ LOCATION:Glasburen Seminar Room\, Chemical Biological Centre (KBC) Building\, Umeå University\, Umeå\, 901 87\, Sweden CATEGORIES:Event ORGANIZER;CN="SciLifeLab Ume%C3%A5":MAILTO:umea@scilifelab.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20230504T120000 DTEND;TZID=Europe/Stockholm:20230504T130000 DTSTAMP:20260403T224403 CREATED:20230101T213814Z LAST-MODIFIED:20230427T141642Z UID:10000773-1683201600-1683205200@www.scilifelab.se SUMMARY:Campus Solna Seminar Series: Isabelle Leo and Panagiotis Kalogeropoulos DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nThis week:\n\n\n\n\n\n\nIsabelle Leo\n\n\n\nJanne Lehtiö – alpha 1 \n\n\n\nDeciphering cell biology and molecular variation in leukemia using proteomics \n\n\n\n\n\nPanagiotis Kalogeropoulos\n\n\n\nMarc Friedländer – gamma 5 \n\n\n\nDiscovery and characterization of cancer specific miRNAs and other small RNA sequences \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page. URL:https://www.scilifelab.se/event/campus-solna-seminar-series-may-4/ LOCATION:Milkyway SciLifeLab Solna\, Tomtebodavägen 23\, Solna CATEGORIES:Community ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/09/IMG_20221103_120135408_HDR-scaled.jpg ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20230505T130000 DTEND;TZID=Europe/Stockholm:20230505T150000 DTSTAMP:20260403T224403 CREATED:20230420T160433Z LAST-MODIFIED:20230420T160437Z UID:10000863-1683291600-1683298800@www.scilifelab.se SUMMARY:MethylR - From Sequencer to Publication DESCRIPTION:Join and learn how to use methylR\, a new online tool from Clinical Genomics Linköping and Bioinformatics\, Core Facility\, Linköping University for methylation data analysis. \n\n\n\nMassimiliano Volpe\, Ph.D\, Jyotirmoy Das\, Ph.D\, methylR: a graphical interface for comprehensive DNA methylation array data analysis\, Bioinformatics\, 2023;\, btad184. \n\n\n\nRead more\n\n\n\nmethylR_flyer_3Download URL:https://www.scilifelab.se/event/methylr-from-sequencer-to-publication/ LOCATION:Online event via Zoom CATEGORIES:Event ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2020/05/AdobeStock_297709311-scaled.jpeg ORGANIZER;CN="Clinical Genomics Link%C3%B6ping":MAILTO:tobias.strid@liu.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20230508T090000 DTEND;TZID=Europe/Stockholm:20230512T170000 DTSTAMP:20260403T224403 CREATED:20230330T125745Z LAST-MODIFIED:20230330T130447Z UID:10000846-1683536400-1683910800@www.scilifelab.se SUMMARY:Workshop in Metabolomics using Nuclear Magnetic Resonance Spectroscopy  DESCRIPTION:Linköping University together with the Swedish NMR Centre and SwedNMR are pleased to invite to a Workshop in Metabolomics using Nuclear Magnetic Resonance Spectroscopy 8th to 12th of May\, 2023 at Linköping University. The workshop aims to give an overview of NMR based metabolomics for PhD-students and researchers that will apply this technique in their own research. Lectures and seminars/workshops on; overview of metabolomics\, introduction to NMR\, experimental design\, biobanking of samples\, workflow\, sample preparation strategy\, application of multivariate data analysis and clinical applications. The workshop contains practical laboratory exercises using NMR. For PhD students it is also possible to participate in the workshop as a 3hp course. In connection to the workshop a mini-symposium will be organised the 9th of May.  \n\n\n\n\n\n\n\nOrganizers: Swedish NMR Centre and Linköping University \n\n\n\n\n\n\n\nApplication\n\n\n\n\n\nCourse website\n\n\n\n\n\nWorkshop website\n\n\n\n\n\nMini symposium website\n\n\n\n\n\nApplication closes: April 15\, 2023 URL:https://www.scilifelab.se/event/workshop-in-metabolomics-using-nuclear-magnetic-resonance-spectroscopy/ LOCATION:Berzeliussalen\, Entrance 65\, Campus US\, Linköping University CATEGORIES:Course ORGANIZER;CN="Swedish NMR Centre":MAILTO:info@nmr.gu.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20230508T151500 DTEND;TZID=Europe/Stockholm:20230508T161500 DTSTAMP:20260403T224403 CREATED:20230412T095910Z LAST-MODIFIED:20230414T114147Z UID:10000854-1683558900-1683562500@www.scilifelab.se SUMMARY:[The Svedberg seminar] - Global mapping of protein subcellular location offers a new era of comparative and evolutionary cell biology. DESCRIPTION:Ross Waller \, Professor of Evolutionary Cell Biology \n\n\n\n Department of Biochemistry \n\n\n\nUniversity of Cambridge\, UK \n\n\n\n \n\n\n\n \n\n\n\nBio\n\n\n\nRoss Waller completed a PhD in 2000 at the University of Melbourne working on the newly discovered remnant plastid in apicomplexan parasites Plasmodium and Toxoplasma. He undertook postdoctoral training from 2000-3 as a Peter Doherty Fellow working on Leishmania cell biology (University of Melbourne)\, and then from 2003-5 as a Canadian Institutes of Health Research working on molecular evolution in diverse eukaryotes at the University of British Columbia. In 2005 be joined the faculty of the School of Botany\, University of Melbourne\, and in 2013 relocated his laboratory to the Department of Biochemistry\, University of Cambridge. \n\n\n\n \n\n\n\nGlobal mapping of protein subcellular location offers a new era of comparative and evolutionary cell biology\n\n\n\nMost of the diversity of eukaryotic life is represented by unicellular organisms\, and most of this has diverged from well-studied model organisms by over a billion years of evolution. Consequently\, while core eukaryotic cellular and molecular biology is often conserved\, this represents only a small fraction of the molecular diversity\, organisation\, and function of most cells. This\, in turn\, severely constrains our ability to infer the biology of most of eukaryotic life from the better-studied models such as animals and fungi. To address the need for de novo characterisation of cells’ molecular diversity we use a spatial proteomics method called LOPIT that simultaneously captures the steady-state subcellular locations of thousands of proteins. We use these new cellular blueprints as springboards to study the evolutionary processes\, adaptations and trajectories that have contributed to eukaryotic cell diversity\, with particular focus on understanding the apicomplexan parasites and their close algal relatives the dinoflagellates. \n\n\n\n \n\n\n\nHost: Fabien Burki\, UU fabien.burki@ebc.uu.se URL:https://www.scilifelab.se/event/the-svedberg-seminar-global-mapping-of-protein-subcellular-location/ LOCATION:BMC Room C8:301\, Husargatan 3\, Uppsala\, Sweden CATEGORIES:Event ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/02/Picture1-The-Svedberg.png ORGANIZER;CN="The Svedberg Seminar Series":MAILTO:thesvedberg@scilifelab.uu.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20230509T080000 DTEND;TZID=Europe/Stockholm:20230511T170000 DTSTAMP:20260403T224403 CREATED:20230413T131100Z LAST-MODIFIED:20230413T131140Z UID:10000857-1683619200-1683824400@www.scilifelab.se SUMMARY:European Chemical Biology Symposium DESCRIPTION:The free event will combine ELRIG’s inaugural meeting on Therapeutic OLIGOs with the 8th European Chemical Biology Symposium (ECBS) and will be held in Gothenburg\, Sweden from May 9–11. Over the three days\, academia\, industry\, and the vendor community will discuss recent advancements in two ultra-exciting areas of drug discovery and biological research: therapeutic oligonucleotides and chemical biology. \n\n\n\nSpeakers range from breakthrough therapeutic oligo pioneer Frank Bennet\, to the vastly experienced Marie Vikstrom Lindholm of Silence Therapeutics. \n\n\n\nKeynote speakers\n\n\n\nFrank Bennett\, Katherine Donovan\, Steven Dowdy\, Marie Wikstrom Lindholm and Shantanu Singh. \n\n\n\nPresenters\n\n\n\nPetr Bartunek\, Tom Brown\, Peter Crowley\, Samir EL Andaloussi\, Simon Elsässer\, Alice Ghidini\, Aurelie Goyenvalle\, Peter Hagedorn\, Emma Kay\, Stefan Kubicek\, Michael Kurczy\, Pär Matsson\, Cristina Mayor-Ruiz\, Rui Moreira\, Sílvia Osuna\, Andrea Rentmeister\, Chiara Saponaro\, Sabine Sewing. \n\n\n\nRead more URL:https://www.scilifelab.se/event/european-chemical-biology-symposium/ LOCATION:AstraZeneca\, PGN Entrance\, Pepparedsleden 5\, Mölndal\, 431 53 CATEGORIES:Event END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20230511T100000 DTEND;TZID=Europe/Stockholm:20230511T130000 DTSTAMP:20260403T224403 CREATED:20230502T074324Z LAST-MODIFIED:20230502T074954Z UID:10000875-1683799200-1683810000@www.scilifelab.se SUMMARY:Start discovering with Xenium DESCRIPTION:Introducing high-performance subcellular spatial profiling made easy with Xenium In Situ. The Xenium platform reveals new insights into cellular structure and function by performing high-throughput mapping of hundreds of RNA targets in their true tissue context. The platform includes a versatile and easy-to-use instrument\, sensitive and specific chemistry\, a diverse menu of customizable panels\, and powerful visualization software. \n\n\n\n\n\nProgram\n\n\n\n9.30Registration10.00Welcome & ISS platform services\, Katarina Tiklova \, ISS SciLifeLab10.15High-performance subcellular spatial profiling with Xenium In-Situ\, Johanna Stergiadou\, 10x genomics11.15Xenium data showcase\, Katarina Tiklova \, ISS\, SciLifeLab11.30Q&A and concluding remarks12.00Lunch & Mingle\n\n\n\nRegistration URL:https://www.scilifelab.se/event/start-discovering-with-xenium/ LOCATION:Ragnar Granit\, Biomedicum\, Solnavägen 9\, Solna\, 17165 CATEGORIES:Event ORGANIZER;CN="In Situ Sequencing Unit Scilifelab":MAILTO:iss@scilifelab.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20230511T120000 DTEND;TZID=Europe/Stockholm:20230511T130000 DTSTAMP:20260403T224403 CREATED:20230101T214112Z LAST-MODIFIED:20230504T070256Z UID:10000774-1683806400-1683810000@www.scilifelab.se SUMMARY:Campus Solna Seminar Series: Christian Gnann DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nThis week:\n\n\n\n\n\n\nChristian Gnann\n\n\n\nEmma Lundberg – alpha 2 \n\n\n\nMetabolic Moonlighting and Heterogeneity Metabolic Moonlighting and Heterogeneity Create Phenotypic Diversity in Human Cells \n\n\n\n\n\n\n\n\n\n \n\n\n\n \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page. URL:https://www.scilifelab.se/event/campus-solna-seminar-series-may-11/ LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden CATEGORIES:Community ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/09/IMG_20221103_124630107_HDR-scaled.jpg ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20230511T150000 DTEND;TZID=Europe/Stockholm:20230511T170000 DTSTAMP:20260403T224403 CREATED:20230414T103209Z LAST-MODIFIED:20230504T083532Z UID:10000859-1683817200-1683824400@www.scilifelab.se SUMMARY:Rspace Demo- learn about the Rspace Laboratory Notebook DESCRIPTION:Join SciLifeLab Data Centre for an exciting Rspace demo! \n\n\n\nWhen: May 11 at 15.00-17.00 CEST (registration open till May 11 at 17.00) \n\n\n\nTarget groups: PhD students\, PIs and research staff \n\n\n\nRspace is a state-of-the-art electronic lab notebook designed to help scientists and researchers manage their research data more efficiently. With its powerful features and intuitive interface\, Rspace makes it easy to collaborate with team members\, organize data\, and streamline your research workflows. \n\n\n\nDuring the demo\, you’ll get an in-depth look at Rspace’s features and capabilities\, and learn how it can help you accelerate your research projects. You’ll also have the opportunity to ask questions and get expert advice from the team of Rspace specialists. \n\n\n\nWhether you’re a seasoned researcher or just starting out\, this demo is a must-attend event. Don’t miss this chance to discover how Rspace can transform the way you work and help you achieve your research goals. \n\n\n\nWe look forward to seeing you there! \n\n\n\n \n\n\n\nFor additional information contact SciLifeLab Data Centre datacentre@scilifelab.se or Sara El-Gebali\, project lead for metadata and curation at SciLifeLab Data Centre sara.elgebali@scilifelab.uu.se \n\n\n\n\nRegister here URL:https://www.scilifelab.se/event/rspace-demo/ LOCATION: END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20230512T090000 DTEND;TZID=Europe/Stockholm:20230512T093000 DTSTAMP:20260403T224403 CREATED:20230201T125652Z LAST-MODIFIED:20230228T152444Z UID:10000800-1683882000-1683883800@www.scilifelab.se SUMMARY:[Clinical Talks] When ends meet\, molecular tools for clinical good DESCRIPTION:Ulf Landegren\n\n\n\nUppsala University \n\n\n\n\n\n\n\nUlf Landegren received his MD and PhD in Uppsala\, Sweden\, before spending five years at California Institute of Technology. As professor of molecular medicine in Uppsala his research focuses on developing molecular tools to meet needs in basic research and medicine\, from analyses of genetic variation with techniques such as oligonucleotide ligation assays and padlock probes to protein assays using oligonucleotide-conjugated antibodies in proximity assays for measuring protein expression levels in liquid samples or imaging their distribution in situ. Professor Landegren is a member of EMBO\, the Royal Swedish Academy of Sciences and the Royal Society of Sciences at Uppsala. He is member of several academic or industrial boards and advisory boards. He has authored 230 peer-reviewed publications\, and he is inventor of some 50 patents or applications. Work in his lab has so far given rise to 12 spin-out companies with a combined staff of more than 900 people\, including two companies that are publicly traded (Olink Proteomics and Q-linea). Technologies from his lab have also been licensed to many leading international biotech and diagnostic companies. \n\n\n\n \n\n\n\nregister to receive zoom link\n\n\n\nModerator: Michael Akhras \n\n\n\n\n\n\n\n \n\n\n\nClinical Talks\n\n\n\nClinical Talks is back for more! With a brand new and shiny Season 6. After successfully completing 5 seasons with > 70 enthusiastic Clinical Talkers to our record\, we have barely scratched the surface of all the amazing work our clinical\, academic and industry Life Science community has to offer. More about the upcoming events is available here. \n\n\n\nThese events are co-organized by Karolinska Institutet Innovations AB and SciLifeLab\, together with Colibri Ventures. URL:https://www.scilifelab.se/event/clinical-talks-when-ends-meet-molecular-tools-for-clinical-good/ LOCATION:Online event via Zoom CATEGORIES:Event ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/08/Square-500x500-Clinical-Talks@4x.png ORGANIZER;CN="Clinical Talks":MAILTO:precisionmedicine@scilifelab.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20230515T080000 DTEND;TZID=Europe/Stockholm:20230516T170000 DTSTAMP:20260403T224403 CREATED:20220926T143527Z LAST-MODIFIED:20230514T190911Z UID:10000691-1684137600-1684256400@www.scilifelab.se SUMMARY:EMBL-SciLifeLab Data Science workshop DESCRIPTION:We would like to cordially invite members of the SciLifeLab and EMBL Communities to this workshop! This event will bring together researchers\, scientific and technical staff at the EMBL and SciLifeLab\, to make new acquaintances and collaborations and to learn and be inspired by each other. \n\n\n\nThe workshop program starts at 09:00 on May 15 and ends after lunch on May 16. \n\n\n\nThe workshop will be a hybrid event enabling participation to the wider community at all EMBL and SciLifeLab sites. \n\n\n\nLooking forward to meeting you in Uppsala in May! \n\n\n\nSessions\n\n\n\n\nInternal and external training and support\n\n\n\nProvision of public data services – computational tools\n\n\n\nArtificial intelligence\n\n\n\nIntegrated data management and Scientific workflow sharing\n\n\n\nTechnical infrastructure – computational solutions\n\n\n\nBiological theme – Imaging\n\n\n\nBiological theme – Human data\n\n\n\n\nParticipation by invitation only. Target audience: SciLifeLab and EMBL staff. \n\n\n\nScientific committee\n\n\n\n\nJohan Rung\, SciLifeLab\n\n\n\nCarolina Wählby\, SciLifeLab\n\n\n\nJan Korbel\, EMBL\n\n\n\nRupert Lueck\, EMBL\n\n\n\nRolf Apweiler\, EMBL\n\n\n\n\n\n\n\n\n\n\n\n\nProgram\n\n\n\nMonday May 15\nTime slotMonday\, May 1509:00Welcome and introductionOlli Kallioniemi\, SciLifeLab and DDLS Director\, and Jan Korbel\, Head of Data Science\, EMBL09:15Session 1: Internal and external training and supportThemes: what is training at EMBL\, Data Science training work stream -SciLifeLab training hub -Areas for synergiesModerator: Cath Brooksbank\, Head of Training\, EMBL-EBIEMBL Data Science Training: the story so farLisanna Paladin\, Bioinformatics Community Project Manager\, EMBLSciLifeLab Training Hub: the story starts now – what are the goals?Nina Norgren\, Training manager\, SciLifeLabPanel discussion and questions on stimulating exchange and collaboration10:20Coffee breakMounting of posters10:50Session 2: Provision of public data services – computational toolsModerator: Johanna McEntyre\, Associate Director for Service\, EMBL-EBISuccessfully managing a portfolio of data servicesJohanna McEntyre\, Associate Director for Service\, EMBL-EBIIntroductions to:Metabolic atlas Mihail Anton\, NBIS expert\, SciLifeLabProtein DatabaseSameer Velankar (PDB Europe)\, Team Leader\, EMBL-EBIPanel discussion: the future challenges and opportunities for public data servicesMihail Anton (Metabolic Atlas)Matthew Hartley (BioImage Archive)Cecilia Lindskog (Human Protein Atlas)Fergal Martin (Ensembl)Sameer Velankar (PDB Europe)11:55LunchPoster session13:15Session 3: Artificial IntelligenceModerator: Carolina Wählby\, Scientific Director of BioImage Informatics and Group Leader\, SciLifeLabAI in Image AnalysisAnna Kreshuk\, Group Leader\, EMBLAI in Cancer genomics\, prediction of treatmentIsidro Cortes-Ciriano\, Group Leader\, EMBL-EBIAI in spatial omicsCarolina Wählby\, Scientific Director of BioImage Informatics and Group Leader\, SciLifeLabServing AI modelsOla Spjuth\, Group Leader and AI coordinator\, SciLifeLabDiscussion on how to foster AI further14:20Coffee breakPoster session14:50Session 4: Integrated data management and scientific workflow sharingModerator: Henning Hermjakob\, Head of Molecular Systems\, EMBL-EBIExpression AtlasIrene Papatheodorou\, Team Leader – Gene Expression\, EMBL-EBIComplex WorkflowsMats Nilsson\, Platform Director Spatial Biology and Group Leader\, SciLifeLabDiscussion15:55Short break16:00Session 5: Technical infrastructure – computational solutionsModerator: Johan Rung\, Head of Data Centre\, SciLifeLabCloud – Beyond the hypeAndy Cafferkey\, Head of Technical Services\, EMBL-EBIThe IT role in empowering advanced research data managementRupert Lück\, Head of IT Services\, EMBLThe great datawanderung – how sensitive data is reshaping research infrastructures. Data transfer\, Compute moving to dataJohan Viklund\, NBIS Chief Technical Officer\, SciLifeLabNeeds and requirements to provide next generation of compute services (notebooks\, containerization\, GPUs\, etc) – energy\, carbon issuesOla Spjuth\, Group Leader and AI coordinator\, SciLifeLab17:05Wrap-up17:10Poster session with refreshments18:30Conference Dinner\n\n\n\n\nTuesday May 16\nTime slotTuesday\, May 1609:00Session 6: Biological theme – imagingModerator: Anna Klemm\, Head of the BioImage Informatics Facility\, SciLifeLabImage Data and Image analysisHjalmar Brismar\, Platform Scientific Director Advanced Light Microscopy unit and Group Leader\, SciLifeLabChristian Tischer\, Centre for Bioimage Analysis\, Scientist/IT Engineer\, EMBLPanel discussion: Workflows from image data generation to data analysis and finally image data publication. How are projects and data managed?Hjalmar Brismar\, SciLifeLabMatthew Hartley\, BioImage Archive Team Leader\, EMBL-EBIAnna Klemm\, SciLifeLabErik Lindahl\, Group Leader\, SciLifeLabChristian Tischer\, EMBL10:05Coffee breakPoster session10:35Session 7: Biological theme – human dataModerator: Helen Parkinson\, Team Leader SPOT\, EMBL-EBIIntegrated FEGA/FDA-components/Federated AnalysisOliver Stegle\, Associate Group Leader\, EMBLDevelopments from Human Data ServicesBengt Persson\, Platform Director NBIS\, SciLifeLabDiscussion11:40Workshop wrap-upCarolina Wählby\, Scientific Director of BioImage Informatics\, SciLifeLab and Rolf Apweiler\, Joint Director of EMBL-EBI12:00LunchAfternoon:Self-organized break-out tech workshops\, Site visits\, etc\n\n\n\n\n\n\n\n\n\n\n\n\nSessions\n\n\n\n \n\n\n\nSession 1: Internal and external training and support\nEMBL and SciLifeLab recently launched data science training initiatives. In this session we will share our approaches to developing data science training  – our plans\, our successes and our greatest challenges. An open discussion will explore areas for future collaboration and how we might work together to recognise those who dedicate their time\, usually on a volunteer basis\, to advanced scientific training. \n\n\n\n\nSession 2: Provision of public data services / computational tools of the SciLifeLab/EMBL-EBI \nExplore how to manage a portfolio of public computational tools and data services\, with real-world examples from both emerging and established resources\, and a panel discussion on the future challenges and opportunities for public data services \n\n\n\nIn this workshop: \n\n\n\n\nA keynote talk introduces key points of successfully managing a portfolio of data services\n\n\n\nOne emerging and one established data service summarize their management approach\n\n\n\nA panel discussion including other data service leads from EMBL-EBI and SciLifeLab discuss the future challenges and opportunities for public data services\n\n\n\n\n\nSession 3: Artificial intelligence\nIn this session we will focus on how to foster AI further (within EMBL-EBI and SciLifeLab) – What are the lessons learned during the last decade of incorporating learning-based methods using neural networks in biomedical research? Where lies the power\, and what are the limitations? How do we handle bottle-necks such as lack of reliably annotated training data\, and how do we avoid biases introduced by factors such as sample preparation and data collection? How can we include ‘the human in the loop’\, and how can we share models? \n\n\n\n\nSession 4: Integrated data management & Scientific workflow sharing\nModern\, data-intensive science requires complex and ideally reproducible workflows. Based on two opening presentations\, one from a complex “research” workflow background\, one from a repeatable “service” background\, and a subsequent panel discussion\, we want to explore \n\n\n\n\nWhat are the scientific demands and requirements for computational workflows?\n\n\n\nHow to strike the right balance between reproducibility and flexibility?\n\n\n\nWhat is the current status and future aspirations for technical support of computational workflows?\n\n\n\nWhat are the opportunities for coordination / integration of internal /external workflows between SciLifeLab and EMBL?\n\n\n\n\n\nSession 5: Technical infrastructure – computational solutions\nThe technical infrastructures and computational solutions provided by teams across EMBL and SciLifeLab are at the heart and the critical foundation of data science activities in both institutions. In this session\, we aim to initiate a cross-organizational dialogue and to set the stage for further networking among interested stakeholders to explore key IT and technical challenges and learn more about potential solutions being explored on both sides. \n\n\n\nThe session will start with four short presentations to stimulate the open discussion that will follow. Our input from the presentations will cover a wide range of technical topics and challenges: \n\n\n\ni) key aspects of using cloud services\, \n\n\n\nii) opportunities to improve scientific data management via dedicated IT solutions\, \n\n\n\niii) the challenges associated with shared analysis and transfer of (sensitive) data across centres\, and \n\n\n\niv) exploring the needs for next-gen computational\, data analytics\, and management services for data science in the life sciences. \n\n\n\n\nSession 6: Biological theme – imaging\nIn the imaging session we will discuss workflows from image data generation to data analysis and finally publication. Which paths does microscopy data take at EMBL and SciLifeLab? How can data analysis and data management be integrated early on in the project discussions? The session will also give an insight to which kind of imaging projects are handled at both EMBL and SciLifeLab\, since imaging data can have a broad range of characteristics and comes with different analysis and data management needs. \n\n\n\n\nSession 7: Biological theme – human data\nThe Human Data session will focus on challenges working with federated and multidimensional human data\, interfacing with national data \, e.g. Genomics Data Infrastructure (GDI; Persson) enabling realisation of the European 1+ Million Genome project\, and the experience of working at the interface of clinical research with industrial partners\, including the Mannheim alliance (Stegle) and precompetitive industrial collaborations\, e.g.OpenTargets (https://www.opentargets.org/). The session will have two presentations (Stegle\, Persson) followed by a panel discussion. It aims to define the skills set\, mindset\, technical solutions to address shared problems of human research data.  URL:https://www.scilifelab.se/event/embl-scilifelab-data-science-workshop/ LOCATION:Eva von Bahr\, Ångström Laboratory\, Uppsala University\, Uppsala\, Sweden CATEGORIES:Event END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20230522T093000 DTEND;TZID=Europe/Stockholm:20230522T103000 DTSTAMP:20260403T224403 CREATED:20230511T073555Z LAST-MODIFIED:20230511T074003Z UID:10000888-1684747800-1684751400@www.scilifelab.se SUMMARY:How SARS- CoV2 promotes its own infectivity: focus on S-acylation of Spike DESCRIPTION:Extra Research seminar\n\n\n\nGisou van der Goot\, Ph.D.Vice-President for Responsible TransformationFull Professor\, Global Health InstituteEPFL- Swiss Institute of Technology\, Lausanne (CH) \n\n\n\nZoom link URL:https://www.scilifelab.se/event/how-sars-cov2-promotes-its-own-infectivity-focus-on-s-acylation-of-spike/ LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden ORGANIZER;CN="DEI":MAILTO:dei@scilifelab.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20230522T143000 DTEND;TZID=Europe/Stockholm:20230522T153000 DTSTAMP:20260403T224403 CREATED:20230511T074232Z LAST-MODIFIED:20230511T074318Z UID:10000889-1684765800-1684769400@www.scilifelab.se SUMMARY:Changing the culture in competitive academic environments DESCRIPTION:Moderated discussion – including fika and refreshments\n\n\n\nGisou van der Goot\, Ph.D.Vice-President for Responsible TransformationFull Professor\, Global Health InstituteEPFL- Swiss Institute of Technology\, Lausanne (CH) URL:https://www.scilifelab.se/event/changing-the-culture-in-competitive-academic-environments/ LOCATION:Gamma 7 Lunchroom\, Tomtebodavägen 23A\, Solna\, 17121 ORGANIZER;CN="DEI":MAILTO:dei@scilifelab.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20230522T151500 DTEND;TZID=Europe/Stockholm:20230522T161500 DTSTAMP:20260403T224403 CREATED:20230502T162232Z LAST-MODIFIED:20230503T062420Z UID:10000874-1684768500-1684772100@www.scilifelab.se SUMMARY:[The Svedberg seminar] - Photo-“click” and photo-“unclick” strategies for spatiotemporal control of substrate immobilization and release DESCRIPTION:Vladimir Popik \, Professor of Chemistry \n\n\n\nUniversity of Georgia\, USA \n\n\n\n \n\n\n\n \n\n\n\nBio\n\n\n\nVladimir Popik received his MSc degree (Chemistry) from the Leningrad State University (1986\, Leningrad\, USSR). His PhD project “Conformational Structure and Photochemical Reactivity of 1\,3-Diazodicarbonyl Compounds” was under the supervision of Prof. Irina Korobitcina and Valery Nikolaev at St. Petersburg State University (same school\, new name). After defending his PhD dissertation in 1990\, he continued as a Research Scientist. In 1992 joined Prof. A. Jerry Kresge group at the University of Toronto as a postdoc then accepted Visiting Research Professor position at the University of Toronto in 1996. In 1999 Valdimir joined the faculty of the Center for Photochemical Sciences at the Bowling Green State University as an Assistant Professor. In 2005 he was promoted to Associate Professor. In 2006 Vladimir Popik moved to the University of Georgia where he is now Professor of Chemistry. \n\n\n\nAwards: NSF Career Award 2004; Georgia Cancer Coalition Distinguished Scholar 2006; Senior Member of the National Academy of Inventors 2022.Research interests: devlopment of photochemical tools for biochemical\, bioimaging\, and material sciences applications; practical use of two-photon photochemistry; development of novel strategies for click and photoclick ligations; rational design and synthesis light-activated antimitotic agents and gasotransmitteres; investigation of the mechanism of fast reactions.120 Peer-reviewed publications\, (h-index = 41) \, 10 patents. \n\n\n\n \n\n\n\nPhoto-“click” and photo-“unclick” strategies for spatiotemporal control of substrate immobilization and release\n\n\n\nPhotochemical triggering of “click” reactions permits the spatial and temporal control of the derivatization\, labelling\, cross-linking and patterning of various substrates. The absence of potentially detrimental catalysts and/or activating reagents is another beneficial feature of this approach. “Photo-SPAAC” click strategy is based on the photo-decarbonylation of cyclopropenone moiety incorporated into an 8-membered ring. Induction of photo-“click” ligation using two-photon excitation with NIR light (700 – 800 nm or ~ 1100 nm) allows for the 3-dimensional control of the process.Photo-cleavable linkers\, on the other hand\, allow for the spatiotemporal control of the substrate release. \n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nHost: Daniel Fürth\, UU furth@scilifelab.uu.se URL:https://www.scilifelab.se/event/the-svedberg-seminar-photo-click-and-photo-unclick-strategies/ LOCATION:BMC Room C8:301\, Husargatan 3\, Uppsala\, Sweden CATEGORIES:Event ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/02/Picture1-The-Svedberg.png ORGANIZER;CN="The Svedberg Seminar Series":MAILTO:thesvedberg@scilifelab.uu.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20230525T080000 DTEND;TZID=Europe/Stockholm:20230526T170000 DTSTAMP:20260403T224403 CREATED:20221212T160045Z LAST-MODIFIED:20230524T062900Z UID:10000750-1685001600-1685120400@www.scilifelab.se SUMMARY:CRISPR as a research tool in cancer and regenerative medicine DESCRIPTION:International Symposium \n\n\n\nThis two-day event will bring together leading international experts in the field of CRISPR technology and CRISPR applications in basic research in cancer and regenerative medicine. Attendees will have the opportunity to gain a deeper understanding of the potential and limitations of CRISPR as a research tool\, both in precision genome engineering and in massively parallel\, functional genomics applications and unbiased screens. \n\n\n\nThere will be a poster session\, and short talks will be chosen from submitted abstracts. This event will provide a valuable opportunity for students\, researchers\, educators\, and industry professionals to learn about the latest developments and applications of this exciting and rapidly advancing field. PhD students are encouraged to submit a poster abstract to obtain educational credits towards their PhD. Come join us and learn how CRISPR can accelerate YOUR research! \n\n\n\nThe registration fee of 1\,000 SEK (excl. VAT) includes access to the conference\, lunches and coffee on 25-26 May 2023\, as well as snacks and drinks at the poster session on May 25. According to Swedish and EU legislation 25% VAT will be added to the registration fee before payment.  \n\n\n\n \n\n\n\nAbstracts\n\n\n\nCRISPR Symposium 2023 AbstractsDownload\n\n\n\nProgram\n\n\n\nFinal-Programme-1Download\n\n\n\n\n\n\n\nConfirmed Speakers\n\n\n\nExpanding the CRISPR screening toolbox with Cas12a\, base editors\, and moreJohn Doench\, Broad MITBetter genome editing by listening to the cellsJacob Corn\, ETH ZurichFine-tuning of transcription factor expression dosage uncovers non-linear effects in regulatory networksTuuli Lappalainen\, KTH and New York Genome CenterUncovering key resistance mechanisms to cancer immunotherapyYumeng Mao\, Uppsala UniversityHarnessing the CRISPR toolbox to engineer biologyRandall J. Platt\, ETH ZurichTarget discovery – arrayed & pooled CRISPR screening to drive drug discoveryDouglas Ross-Thriepland\, AstraZeneca & CRUK Functional Genomics CentreNew frontiers in pooled CRISPR screensNeville Sanjana\, New York Genome CenterCRISPR discovery platforms for human T cell therapiesEric Shifrut\, Tel Aviv University\n\n\n\n \n\n\n\nOrganizers\n\n\n\nBernhard Schmierer\, CRISPR Functional Genomics/Karolinska InstitutetFredrik Wermeling\, Karolinska Institutet (Wermeling lab website) \n\n\n\nSponsors\n\n\n\n\nCancerfonden\n\n\n\nSciLifeLab \n\n\n\nPhenoTarget\n\n\n\nIDT\n\n\n\nSynthego\n\n\n\nCountagen\n\n\n\nBioNordika\n\n\n\nSingleron BioTechnologies \n\n\n\n\n \n\n\n\nContact\n\n\n\nCrispr2023@akademikonferens.se URL:https://www.scilifelab.se/event/crispr-as-a-research-tool-scilifelab-international-symposium/ LOCATION:Andreas Vesalius Lecture Hall\, Karolinska Institutet\, Berzelius väg 3\, Solna\, 171 65\, Sweden CATEGORIES:Event ORGANIZER;CN="CRISPR Functional Genomics":MAILTO:bernhard.schmierer@ki.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20230525T121500 DTEND;TZID=Europe/Stockholm:20230525T131500 DTSTAMP:20260403T224403 CREATED:20230101T214526Z LAST-MODIFIED:20230522T084554Z UID:10000775-1685016900-1685020500@www.scilifelab.se SUMMARY:Campus Solna Seminar Series: Hongyu Xie DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nThis week:\n\n\n\n\n\n\nHongyu Xie\n\n\n\nJonathan Martin – gamma 5 \n\n\n\nChemical Exposomics in Human Plasma by Gas Chromatography Mass Spectrometry \n\n\n\n\n\n\n\n\n\n \n\n\n\n \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page. URL:https://www.scilifelab.se/event/campus-solna-seminar-series-may-25/ LOCATION:Milkyway SciLifeLab Solna\, Tomtebodavägen 23\, Solna CATEGORIES:Community ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/09/IMG_20221103_123412496_HDR2-scaled.jpg ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20230526T091500 DTEND;TZID=Europe/Stockholm:20230526T120000 DTSTAMP:20260403T224403 CREATED:20230227T134503Z LAST-MODIFIED:20230227T135039Z UID:10000813-1685092500-1685102400@www.scilifelab.se SUMMARY:Advanced fluorescence microscopy symposium – super resolution MINFLUX applications DESCRIPTION:The Advanced Light Microscopy facility welcomes you to a symposium on super resolution MINFLUX \n\n\n\nfluorescence microscopy applications. \n\n\n\nProgram\n\n\n\n09:15MINFLUX imaging & trackingSebastian Schnorrenberg – EMBL09:55DNA-PAINT MINFLUXDaniel Jans –  University Medical Center GöttingenCoffee break11:00Tracking MINFLUXElias Amselem – Uppsala University\n\n\n\nSubmit your registration to: \n\n\n\nhans.blom@scilifelab.se URL:https://www.scilifelab.se/event/advanced-fluorescence-microscopy-symposium-super-resolution-minflux-applications/ LOCATION:Samuelssonsalen\, Tomtebodavägen 6\, Solna\, Sweden CATEGORIES:Event ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2023/02/Place-holder-image.png ORGANIZER;CN="Advanced Light Microscopy Unit":MAILTO:stewen@kth.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20230526T110000 DTEND;TZID=Europe/Stockholm:20230526T120000 DTSTAMP:20260403T224403 CREATED:20230414T123346Z LAST-MODIFIED:20230522T120452Z UID:10000861-1685098800-1685102400@www.scilifelab.se SUMMARY:SciLifeLab Data Platform Launch DESCRIPTION:Join SciLifeLab Data Centre for the official launch of the SciLifeLab Data Platform. At this launch event\, we will demonstrate how the data platform supports DDLS\, the services we offer\, and how you can get access to hosting resources. In addition\, a number of our users will present their user cases\, followed by a summary. \n\n\n\nDate: May 26th at 11-12 CEST \n\n\n\nThe SciLifeLab Data Platform is a technical environment offering data-centric tools and databases as well as an overarching website with the goal to support and accelerate data-driven life science research in Sweden. \n\n\n\nThe services hosted on the Platform are available to all life science researchers in Sweden. The platform is maintained by the SciLifeLab Data Centre.The services hosted on the SciLifeLab Data Platform adhere to the values of open science\, transparent research\, and FAIR as well as good data management practises throughout the data life cycle. \n\n\n\nRegister to join the event\n\n\n\nLaunch event \n\n\n\n11.00-11.15 Welcome and introduction to the SciLifeLab Data Platform\, Johan Rung\, Head of SciLifeLab Data Centre \n\n\n\n11.15-11.35 Platform services\, and how to access to hosting resources\, Liane Hughes\, SciLifeLab Data Centre \n\n\n\n11.35-11.50 Flash talks by Platform users Elin Kronander\, NBIS\, Wesley Schaal\, Uppsala University/ SciLifeLab\, and Oliver Billker\, Umeå University/ SciLifeLab) \n\n\n\n11.50-12.00 Summary \n\n\n\n \n\n\n\nWelcome \n\n\n\nRegistration open till Friday May 26 12.00 CEST \n\n\n\nThis event will be recorded and available on data.scilifelab.se \n\n\n\nFor more information please contact SciLifeLab Data Centre at datacentre@scilifelab.se URL:https://www.scilifelab.se/event/scilifelab-data-platform-launch/ LOCATION:Online event via Zoom CATEGORIES:Event ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2023/04/SciLifeLab-Data-Platform-Launch-event.png ORGANIZER;CN="SciLifeLab Data Centre":MAILTO:datacentre@scilifelab.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20230529T090000 DTEND;TZID=Europe/Stockholm:20230529T120000 DTSTAMP:20260403T224403 CREATED:20230418T142805Z LAST-MODIFIED:20230524T130852Z UID:10000862-1685350800-1685361600@www.scilifelab.se SUMMARY:PacBio Revio Launch Event DESCRIPTION:The National Genomics Infrastructure (NGI) are happy to announce the acquisition of the latest PacBio sequencing system – the Revio. One Revio SMRT sequencing cell can produce approx. 90Gbp of data corresponding to 30x of a human genome in 24hrs. The instrument generates highly accurate HiFi reads plus methylation calling for half the cost compared to previous systems.  \n\n\n\nFor those of you that have the possibility\, NGI invites you to a half-day seminar on May 29th to learn more about the new Revio system! The event is scheduled between 9-12 in Navet\, BMC\, Uppsala\, and lunch will be served to registered participants. \n\n\n\nDuring the seminar\, there will also be an NGI-sponsored lottery with the possibility to win free Revio sequencing!  \n\n\n\nSusanne Hellstedt Kerje on behalf of NGI \n\n\n\n\n\n\n\nRegistration\n\n\n\n\n\n\n\nProgram\n\n\n\nBMC\, Navet\, Entrance C11\, Husargatan 3\, Uppsala09:00Welcome (Susanne Hellstedt Kerje\, NGI-Uppsala)09:10Reveal more with HiFi sequencing at scale – Introduction to PacBio Revio System (Somar Al-Walai\, PacBio)09:30NGIs experience from the Revio system (Adam Ameur\, Susanne Hellstedt Kerje\, NGI-Uppsala)10:00Coffee10:30Complex genomic rearrangements: an underestimated cause of rare dieseases  (Anna Lindstrand\, Karolinska Institutet)11:00Disentangling genome evolution and speciation in polyploid grasses (Pär Ingvarsson\, Swedish University of Agricultural Sciences)11:30Changing the game with PacBio highly accurate long-read sequencing (Nick Jordan\, PacBio)11:50Q&A session including announcement of winner in the Revio sequencing lottery12:00Lunch to registered participants URL:https://www.scilifelab.se/event/pacbio-revio-launch-event/ LOCATION:Navet\, SciLifeLab Uppsala\, SciLifeLab Uppsala\, BMC C11\, Husargatan 3\, Uppsala\, 75237\, Sweden CATEGORIES:Event ATTACH;FMTTYPE=image/webp:https://www.scilifelab.se/wp-content/uploads/2023/04/img-sharing-revio.webp ORGANIZER;CN="NGI Uppsala":MAILTO:susanne.kerje@igp.uu.se END:VEVENT BEGIN:VEVENT DTSTART;TZID=Europe/Stockholm:20230530T120000 DTEND;TZID=Europe/Stockholm:20230530T130000 DTSTAMP:20260403T224403 CREATED:20230522T143133Z LAST-MODIFIED:20230522T143352Z UID:10000896-1685448000-1685451600@www.scilifelab.se SUMMARY:Cross-linking and Hydrogen-Deuterium Exchange Mass Spectrometry DESCRIPTION:In the frame of the “SciLifeLab Site Umeå / KBC Infrastructure Seminar Series”\, the seminars will be organised every second Tuesday during spring 2023. The seminars will be held in a hybrid format IRL in Glasburen\, KBC\, and online via Zoom. Learn more about the seminar series and Schedule for Spring 2023 here. \n\n\n\nOn May 30th\, 12:00-13:00\, SciLifeLab Site Umeå / KBC Infrastructure Seminar Series presents: \n\n\n\nCross-linking and Hydrogen-Deuterium Exchange Mass Spectrometry as a National Infrastructure Service \n\n\n\nSimon Ekström\, Swedish National Infrastructure for Biological Mass Spectrometry (BioMS)\, Lund University\, Lund\, Sweden and Structural Proteomics\, SciLifeLab Integrated Structural Biology platform (ISB)\, Lund\, Sweden \n\n\n\nSign up (latest by Monday\, 29 May\, 10 a.m.) for on-site attendance to reserve your free lunch sandwich: \n\n\n\nRead more\n\n\n\nor follow online via Zoom: https://umu.zoom.us/j/63138997026 (registration is not required). URL:https://www.scilifelab.se/event/cross-linking-and-hydrogen-deuterium-exchange-mass-spectrometry/ LOCATION:Glasburen Seminar Room\, Chemical Biological Centre (KBC) Building\, Umeå University\, Umeå\, 901 87\, Sweden CATEGORIES:Event ORGANIZER;CN="SciLifeLab Ume%C3%A5":MAILTO:umea@scilifelab.se END:VEVENT END:VCALENDAR