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BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20211026T110000
DTEND;TZID=Europe/Stockholm:20211026T115000
DTSTAMP:20260403T230801
CREATED:20211014T073033Z
LAST-MODIFIED:20211110T152453Z
UID:10000463-1635246000-1635249000@www.scilifelab.se
SUMMARY:Uppsala PhD&Postdoc seminars: Simone Fouché & Jana Immenschuh
DESCRIPTION:Welcome to the very first SciLifeLab Uppsala PhD&Postdoc seminars!We are very happy to host exciting talks by PhD students and Postdocs from a great variety of fields within SciLifeLab. \n\n\n\nThe seminars will take place every Tuesday from 11:00 to 11:50 \n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nFor this very first occasion the seminars will be:\n\n\n\nTowards unravelling the mystery of germline-restricted chromosomesSimone Fouché\, Postdoc at the Suh Group\, Dept. of Organismal Biology – Systematic BiologyMapping and characterization of aromatase gene expression in the male and female young adult rat brainJana Immenschuh\, PhD student at the Neuropsychopharmacology Group\, Dept. of Neuroscience \n\n\n\nAbstracts\n\n\n\nTitle: Towards unravelling the mystery of germline-restricted chromosomes \n\n\n\nSummary:Not all cells in eukaryotic organisms contain the same genome\, but rather programmed DNA elimination occurs extensively across the Tree of Life\, whereby fragments of the genome or entire chromosomes are removed during germline-soma differentiation. In zebra finch\, a massive chromosome\, the germline-restricted chromosome (GRC) is present in the germline and absent in the soma. Cytogenetic data suggest GRCs are widely distributed among songbirds. Despite the wide occurrence of programmed DNA elimination\, the mechanisms of programmed DNA elimination\, the function and the evolutionary significance of the phenomenon\, are poorly understood. At present we are working on a reference assembly for the GRC in zebra finch in order to shed some light on the emergence and evolution of this enigmatic chromosome. Specifically we would like show whether: 1. Whether the GRC is always maternally inherited? 2. What is the population level variation and are some regions maintained by selection? 3. Which regions of the genome are more likely to be copied to the GRC\, regions with functions related to development or highly recombining regions of regular chromosomes? \n\n\n\nTitle: Mapping and characterization of aromatase gene expression in the male and female young adult rat brain \n\n\n\nSummary:The enzyme aromatase (Cyp19a1 gene) catalyzes the biosynthesis of estrogens from androgens. Besides several peripheral tissues\, it is expressed in specific brain regions that are of relevance to emotional and cognitive functions in mammalian species\, including rats and humans. Of interest\, aromatase seems to be involved in non-reproductive functions in the brain\, such as regulation of neurogenesis\, synaptic transmission and neuroprotection and might be expressed in a sex-dependent manner. Investigation of its expression throughout the brain has shown to be outdated and imprecise\, and is lacking the identification of sub regions with known sexual dimorphisms or functions related to sex differences in both males and females. Additionally\, little is known about the identity of the neurons expressing aromatase. The present study sought to map the expression pattern of Cyp19a1 throughout the brain of young adult rats of both sexes and elucidate sex differences\, as well as characterize in an exploratory fashion the cell types expressing this gene. The findings will advance the knowledge on aromatase and its role in the brain. As gonadal hormones affect the brain as well as mental health in a profound manner\, this study might shed light on some of the underlying molecular underpinnings.
URL:https://www.scilifelab.se/event/scilifelab-uppsala-phdpostdoc-seminars-simone-fouche-jana-immenschuh/
LOCATION:Online event via Zoom
CATEGORIES:Community
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20211026T130000
DTEND;TZID=Europe/Stockholm:20211026T160000
DTSTAMP:20260403T230801
CREATED:20210928T124945Z
LAST-MODIFIED:20211018T141735Z
UID:10000456-1635253200-1635264000@www.scilifelab.se
SUMMARY:DNP inauguration ceremony
DESCRIPTION:We are very happy to announce the unique collaboration between AstraZeneca and University of Gothenburg on advanced NMR technology\, manifested in the inauguration ceremony of our new DNP-NMR instrument! \n\n\n\nWelcome to the DNP inauguration ceremony to celebrate the DNP-NMR instrument investment at the Swedish NMR Centre\, University of Gothenburg! \n\n\n\nThe ceremony will take place between 13.00 – 16.00 on October 26 in lecture hall Birgit Thilander\, Medicinaregatan 3\, Gothenburg. \n\n\n\nInvited guest speaker professor Lyndon Emsley from EPFL Lausanne will close the ceremony by giving a lecture between 15.00 – 16.00. \n\n\n\nPlease respond before October 16. \n\n\n\nregistration\n\n\n\nProgram\n\n\n\n13.00Welcome remarksWelcome – Göran Karlsson\, Director Swedish NMR Centre\, and Staffan Schantz\, APS AstraZenecaGothenburg ecosystem view – Matti Ahlqvist\, AstraZeneca Gothenburg Executive Site DirectorPharmaceutical development – Piet van den Oetelaar\, Head OPD/AstraZenecaUniversity Research Infrastructures – Göran Hilmersson\, Dean\, The Faculty of Science\, University of Gothenburg.13.45Tour to the new DNP-NMR instrumentArthur Pinon\, SNC14.30Light snacks & refreshments15.00Structure Activity Relations in Materials from DNP-NMRLyndon Emsley\, EPFL Lausanne16.00Closing\n\n\n\n \n\n\n\nOn behalf of the inauguration ceremony team\, \n\n\n\nStaffan Schantz\, AstraZeneca\, Göran Karlsson\, University of Gothenburg\, Ulrika Brath\, University of Gothenburg Nina Berg\, AstraZeneca 
URL:https://www.scilifelab.se/event/dnp-inauguration-ceremony/
LOCATION:Birgit Thilander Lecture Hall\, Medicinaregatan 3\, Göteborg
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2021/09/image001.jpg
ORGANIZER;CN="Swedish NMR Centre":MAILTO:info@nmr.gu.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20211027T080000
DTEND;TZID=Europe/Stockholm:20211029T170000
DTSTAMP:20260403T230801
CREATED:20210906T122129Z
LAST-MODIFIED:20210906T122916Z
UID:10000439-1635321600-1635526800@www.scilifelab.se
SUMMARY:nf-core hackathon
DESCRIPTION:Mark your calendars to join us for the October 2021 nf-core hackathon! \n\n\n\nWith the recent release of the new nf-core template for Nextflow’s DSL2\, in this event we will be going full-steam ahead with conversion of nf-core pipelines from DSL1 to DSL2. The main objectives of this hackathon will be adding nf-core modules and rewriting existing pipelines to the new Nextflow language format. \n\n\n\nFor Nextflow novices\, we will be looking for help in writing Nextflow modules of commonly used bioinformatics tools. \n\n\n\nFor more experienced developers we hope for contributions to writing subworkflows and pipeline code. \n\n\n\nIn the spirit of collaboration and knowledge sharing\, we plan to pair up both novices and experienced developers in pair programming to help get newcomers up to speed on writing and contributing nf-core modules through a pair-programming session for a limited number of participants. Make sure to sign up by September 27\, 2021 to participate in pair-programming! \n\n\n\nThis event is entirely virtual and we are attempting to support people in all timezones. Do get in touch with us if you’d like to help us out! \n\n\n\nRead more and sign up
URL:https://www.scilifelab.se/event/nf-core-hackathon/
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2021/09/nf-core-logo.png
LOCATION:https://www.scilifelab.se/event/nf-core-hackathon/
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20211027T151500
DTEND;TZID=Europe/Stockholm:20211027T164500
DTSTAMP:20260403T230801
CREATED:20211011T121542Z
LAST-MODIFIED:20211012T094117Z
UID:10000462-1635347700-1635353100@www.scilifelab.se
SUMMARY:SciLifeLab COVID-19 seminars: Aaron Bivins and Anna Székely
DESCRIPTION:The third seminar in this series starts with Aaron Bivins\, Post-Doctoral Research Associate\, Department of Civil & Environmental Engineering & Earth Sciences\, University of Notre Dame\, who will talk about Wastewater surveillance for COVID-19 in a vaccinated world.  \n\n\n\nAnna Székely\, Associate Professor\, Researcher at the Department of Aquatic Sciences and Assessment; Section for Ecology and Biodiversity\, Swedish University of Agricultural Sciences (SLU)\, then continues the seminar by talking about Experiences and challenges of Swedish wastewater measurements: from research project to national monitoring \n\n\n\nHost:  Zeynep Cetecioglu Gurol\, KTH \n\n\n\n\n\n\n\nRegistration is mandatory to get the Zoom link for the event \n\n\n\n\n\n\n\n\n\n\n\n\nREGISTRATION\n\n\n\n\n\n\n\n\n\nBIOS and ABSTRACTS\n\n\n\n\n\n\n\n\n\n\n\n\nProgram\n\n\n\n15:15Wastewater surveillance for COVID-19 in a vaccinated world Aaron Bivins\, Post-Doctoral Research Associate\, University of Notre Dame  16:00Experiences and challenges of Swedish wastewater measurements: from research project to national monitoring Anna Székely\, Associate Professor\, Researcher\, SLU
URL:https://www.scilifelab.se/event/scilifelab-covid-19-seminars-aaron-bivins-and-anna-szekely/
LOCATION:Online event via Zoom
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20211028T130000
DTEND;TZID=Europe/Stockholm:20211028T140000
DTSTAMP:20260403T230801
CREATED:20210903T121919Z
LAST-MODIFIED:20211014T094043Z
UID:10000430-1635426000-1635429600@www.scilifelab.se
SUMMARY:Campus Solna Seminar Series: Benilde Bonnefille and Deike Omnus
DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an  initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 13:00-13:50 and following current regulations\, they will be broadcast via zoom. \n\n\n\n \n\n\n\nThis week\n\n\n\nNontarget analysis of river surface samples from Bangladesh: preliminary resultsBenilde Bonnefille (Jonathan Martin\, alpha 2)  \n\n\n\n \n\n\n\nA novel heat shock protein activates the Lon protease at the onset of proteotoxic stressDeike Omnus (Kristina Jonas\, gamma 5) \n\n\n\nRegistration\n\n\n\nRegister to receive the zoom-link. The same zoom link applies for all Campus Solna Seminar Series\, i.e. only one registration is necessary.
URL:https://www.scilifelab.se/event/campus-solna-seminar-series-benilde-bonnefille-and-deike-omnus/
CATEGORIES:Community
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20211028T130000
DTEND;TZID=Europe/Stockholm:20211028T140000
DTSTAMP:20260403T230801
CREATED:20210930T150158Z
LAST-MODIFIED:20211014T151926Z
UID:10000459-1635426000-1635429600@www.scilifelab.se
SUMMARY:[Drug Discovery Seminars] Targeting the oncogenic TGFβ signaling pathway in cancer to inhibit invasion and metastasis
DESCRIPTION:Maréne Landström \n\n\n\nOctober 28\, 13:00-14:00 \n\n\n\n \n\n\n\nregistration\n\n\n\nWelcome to join this Drug Discovery Seminar hosted by the Drug Discovery and Development Platform. \n\n\n\nPresenter: \n\n\n\nProfessor Maréne Landström\, M.D.\, PhD \n\n\n\nDept. Medical Biosciences\, Umeå University \n\n\n\nMaréne Landström is a professor in Pathology at Department of Medical Biosciences\, Umeå University\, Sweden. She has made her postdoctoral training at the Ludwig Institute of Cancer Research\, Uppsala Branch and have also been a group leader at Department of Immunology\, Genetics and Pathology\, Uppsala University before taking on her current position. \n\n\n\nAbstract: \n\n\n\nTransforming growth factor beta (TGFb) is frequently overexpressed in several forms of cancer including prostate cancer and this has been shown to correlate with poor prognosis. TGFb is transducing its canonical and non-canonical signals via its transmembrane TGFb Type II and Type I receptors (TbRII/TbRI) which are serine-threonine kinases. We have found that the TbRI undergoes proteolytic cleavage in cancer cells in a manner dependent on the ubiquitin-ligase tumor necrosis factor (TNF) receptor-associated factor 6 (TRAF6). The intracellular domain of TbRI (TbRI-ICD) is released from the cell membrane\, soluble and is transported to the nucleus in some specific forms of cancer to promote expression of genes causing invasion and metastatic growth. In collaboration with SciLifeLab DDD we have generated potential therapeutic antibodies to target this pathway which we are investigating the function of\, in our established preclinical models for prostate cancer.
URL:https://www.scilifelab.se/event/drug-discovery-seminars-targeting-the-oncogenic-tgf%ce%b2-signaling-pathway-in-cancer-to-inhibit-invasion-and-metastasis/
LOCATION:Online event via Zoom
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20211028T163000
DTEND;TZID=Europe/Stockholm:20211028T180000
DTSTAMP:20260403T230801
CREATED:20211019T131708Z
LAST-MODIFIED:20211027T090347Z
UID:10000469-1635438600-1635444000@www.scilifelab.se
SUMMARY:Meet the Community Committees of SciLifeLab Campus Solna
DESCRIPTION:Committees of SciLifeLab warmly welcome you to the Networking event at SciLifeLab on 28th of October\, 16:30\, Gamma 2 kitchen. \n\n\n\nYou will meet committees of ScilifeLab: \n\n\n\n    – Phd and Postdoc Council \n\n\n\n    – Diversity\, Equity and Inclusion Committee \n\n\n\n    – Public Outreach and Engagement Committee \n\n\n\nYou will learn what we are doing and how you can contribute and participate! \n\n\n\nAfterwards – SciLifeLab Pub. \n\n\n\nLooking forward to meet you! \n\n\n\nBest regards\,Committees of SciLifeLab 
URL:https://www.scilifelab.se/event/meet-the-committees-of-scilifelab-28th-oct-1630/
LOCATION:Gamma 2 Lunchroom\, SciLifeLab\, Tomtebodavägen 23\, Solna\, Sweden
CATEGORIES:Community
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20211029T090000
DTEND;TZID=Europe/Stockholm:20211029T093000
DTSTAMP:20260403T230801
CREATED:20211014T115257Z
LAST-MODIFIED:20211028T115510Z
UID:10000464-1635498000-1635499800@www.scilifelab.se
SUMMARY:Clinical Talks: Blood-based methods for predicting the day of labor
DESCRIPTION:On October 29\, we will host a dual presentation with Dr. Ina Stelzer and Associate Professor Brice Gaudillière. At the Stanford School of Medicine Clinical Gaudillière laboratory\, Ina and Brice have developed a groundbreaking multi-omics approach to track the maternal metabolome\, proteome and immunome to predict exact labor onset. Estimating the time of delivery is of high clinical importance to minimize pre- and post-term deviations causing complications and suffering with ultimately more streamlined use of medical resources for a sustainable future. \n\n\n\n \n\n\n\nRead more about clinical talks\n\n\n\n\n\n\n\nIna is a molecular biologist and immunologist with an extensive background in pregnancy immunology. She obtained her PhD in Immunology 2017 from the University Medical Center Hamburg-Eppendorf (part of the University of Hamburg). Her work then focused on the immunology of pregnancy and feto-maternal immune crosstalk with a focus on fetal origin of disease development later in life. Ina is currently pursuing her postdoctoral research at Stanford University in the Gaudillière laboratory. Building on her expertise in preclinical (mouse) models of pregnancy and translational systems immunology\, her research leverages state-of-the-art single cell proteomic techniques (suspension and imaging mass cytometry) to study feto-maternal immune adaptations in healthy and pathological pregnancies with the goal to improving the health of mothers and their children. Her current K99/R00-funded work investigates the neuro-immune axis in normal pregnancy and the pathogenesis of pregnancy complications. While at Stanford during 2021\, Ina also recently completed the prestigious Stanford University Graduate School of Business organized Stanford Ignite certificate program. \n\n\n\n\n\n\n\nAssociate Professor Brice Gaudillière initially studied Engineering at Ecole Polytechnique in Paris before completing an MD-PhD degree from the Harvard-MIT Health Sciences and Technology program in 2009. During his postdoctoral fellowship at Stanford University in Dr. Garry Nolan’s laboratory\, he developed and standardized a pipeline to implement CyTOF in clinical studies. Brice is also a Board Certified Anesthesiologist and works clinically in the operating room 25% of his time. \n\n\n\nGaudilliere’s research group combines high parameter mass cytometry (suspension and imaging mass cytometry) with other proteomics approaches to study how the human immune system responds and adapts to physiological or pathological stressors. Ongoing studies in the Gaudilliere lab focus on several clinical scenarios including\, 1) surgical recovery and traumatic injury (NIGMS R35\, Stanford ITI\, Anesthesia department FIDL\, 2) pregnancy and preterm birth (Doris Duke Foundation\, Stanford Prematurity Center grants from the Bill and Melinda Gates and the March of Dimes Foundation\, 3) Host immune response to COVID-19 infection (FAST grant)\, 4) neurocognitive recovery after stroke (PHIND grant). \n\n\n\nregister here
URL:https://www.scilifelab.se/event/blood-based-methods-for-predicting-the-day-of-labor/
LOCATION:Online event via Zoom
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2021/09/ClinicalTalks_Season5_twitter_1024.jpg
ORGANIZER;CN="Clinical Talks":MAILTO:precisionmedicine@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20211102T090000
DTEND;TZID=Europe/Stockholm:20211102T100000
DTSTAMP:20260403T230801
CREATED:20210902T060701Z
LAST-MODIFIED:20211019T152930Z
UID:10000425-1635843600-1635847200@www.scilifelab.se
SUMMARY:BioImage Informatics Call4Help Webinar: CellPose
DESCRIPTION:For our next Call4Help session we are organizing a tool-presentation seminar about CellPose\, a generalist algorithm for cell and nuclei segmentation. CellPose is a deep learning-based segmentation method trained on a wide range of image types. It can be applied to both 2D and 3D images.  \n\n\n\nDuring this seminar we will explore different ways to run CellPose\, including demos powered by the ImJoy server which aim to make it easier for users to analyse large datasets in computing clusters. The webinar will be given by Gisele Miranda (BIIF) and Wei Ouyang (KTH\, developer of ImJoy) and will take place on November 2nd\, 09:00-10:00. There will be time for questions and discussion\, so we hope this event to be very interactive. Please register here. \n\n\n\nregistration\n\n\n\nImportant links\n\n\n\nhttps://github.com/MouseLand/cellposehttps://imjoy.io/
URL:https://www.scilifelab.se/event/bioimage-informatics-call4help-5/
CATEGORIES:Event
ORGANIZER;CN="Bioimage Informatics Unit":MAILTO:biif@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20211103T151500
DTEND;TZID=Europe/Stockholm:20211103T164500
DTSTAMP:20260403T230801
CREATED:20211021T083636Z
LAST-MODIFIED:20211027T132303Z
UID:10000472-1635952500-1635957900@www.scilifelab.se
SUMMARY:SciLifeLab COVID-19 seminars: Lars Juhl Jensen and Sonja Aits
DESCRIPTION:The fourth seminar in this series starts with Lars Juhl Jensen\, Professor\, Novo Nordisk Foundation Center for Protein Research\, Faculty of Health and Medical Sciences\, University of Copenhagen\, who will talk about From intraspecies protein networks to host–pathogen networks.  \n\n\n\nSonja Aits\, Associate senior lecturer at Cell Death\, Lysosomes and Artificial Intelligence\, Lund University\, then continues the seminar with a talk on Text mining for COVID-19 knowledge extraction \n\n\n\n\n\n\n\n Registration is mandatory to get the Zoom link for the event  \n\n\n\n\nREGISTRATION\n\n\n\nBIOS & ABSTRACTS
URL:https://www.scilifelab.se/event/scilifelab-covid-19-seminars-lars-juhl-jensen-and-sonja-aits/
LOCATION:Online event via Zoom
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20211104T130000
DTEND;TZID=Europe/Stockholm:20211104T140000
DTSTAMP:20260403T230801
CREATED:20210903T122106Z
LAST-MODIFIED:20211019T152007Z
UID:10000431-1636030800-1636034400@www.scilifelab.se
SUMMARY:Campus Solna Seminar Series: Eva Gracia Villacampa and Lilit Nersisyan
DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an  initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 13:00-13:50 and following current regulations\, they will be broadcast via zoom. \n\n\n\n \n\n\n\nThis week\n\n\n\nGenome-wide Spatial Expression Profiling in FFPE tissuesEva Gracia Villacampa (Joakim Lundeberg\, alpha 3)  \n\n\n\n \n\n\n\nRNA degradation analysis reveals ribosome dynamics in complex microbiome samplesLilit Nersisyan (Vicent Pelechano\, gamma 5) \n\n\n\nRegistration\n\n\n\nRegister to receive the zoom-link. The same zoom link applies for all Campus Solna Seminar Series\, i.e. only one registration is necessary.
URL:https://www.scilifelab.se/event/campus-solna-seminar-series-eva-gracia-villacampa-and-lilit-nersisyan/
CATEGORIES:Community
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20211108T093000
DTEND;TZID=Europe/Stockholm:20211108T103000
DTSTAMP:20260403T230801
CREATED:20210609T090521Z
LAST-MODIFIED:20210826T100254Z
UID:10000400-1636363800-1636367400@www.scilifelab.se
SUMMARY:Career path discussions with Jennifer Lippincott-Schwartz
DESCRIPTION:Jennifer Lippincott-Schwartz from the Howard Hughes Medical Institute will give an account of her career path and discuss with students and postdocs at 09.30 in the SciLifeLab Air&Fire auditorium. Since the number of places is limited\, please register below to participate in this session. \n\n\n\n\n\n\n\nRegister\n\n\n\n\n\n\n\nUsing cutting-edge\, superresolution imaging technology to visualize cellular activity at the nano-scale\, Lippincott-Schwartz lab has redefined how we look at protein dynamics in the cell. When describing her mentorship philosophy\, Jennifer comments that she encourages her group members to develop their own projects. It is only when a colleague feels that he or she “owns” the project that real dedication\, determination\, and creativity emerge. In developing projects\, she considers it is important to build on the strengths and interests of students and postdocs\, rather than focusing exclusively on a group leader’s specific interests at the time. \n\n\n\nThe annual lecture series is set up in the recognition of the development of electron microscopy and will be delivered by eminent scientists in the field of structural biology and molecular visualisation. The event is open to anyone. The main lecture will take place at 4.00pm in the Biomedicum Lecture Theatre. \n\n\n\nContact \n\n\n\nAlexey Amunts\, amunts@scilifelab.se
URL:https://www.scilifelab.se/event/career-path-discussions-with-jennifer-lippincott-schwartz/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20211108T151500
DTEND;TZID=Europe/Stockholm:20211108T163000
DTSTAMP:20260403T230801
CREATED:20211005T080424Z
LAST-MODIFIED:20211005T080541Z
UID:10000460-1636384500-1636389000@www.scilifelab.se
SUMMARY:The Svedberg seminar series: Ass. Prof. Maria Kasper
DESCRIPTION:Karolinska Institutet\, Department of Cell and Molecular Biology\, Sweden \n\n\n\nLINK TO SEMINAR   \n\n\n\n\n\n\n\n\n\nMaria Kasper is Associate Professor at the Karolinska Institutet in Stockholm\, Department of Cell and Molecular Biology. She received her PhD at the University of Salzburg in genetics\, with the majors in human genetics and molecular tumor biology. She came to Sweden in 2007\, where she spent a fruitful postdoctoral time in Rune Toftgårds lab\, and in 2013 she started her own lab focusing on skin\, stem cell biology and single-cell RNA sequencing. In 2016\, her lab pioneered the use of single-cell transcriptomics in the organ skin and has overall contributed with important work in skin biology and regenerative medicine. Maria has received a number of national recognitions such as the Framtidens Forskningsledare from SSF\, Ragnar Söderberg Fellow in Medicine and the CIMED young investigator award\, as well as the prestigious international LEO Foundation Gold Award for outstanding skin research. Since 2020\, she also coordinates together with Fiona Watt the Human Cell Atlas bionetwork for the organ skin. \n\n\n\nDecoding the molecular anatomy of skin\n\n\n\nSkin architecture and its function are determined by a rich variety of epithelial\, mesenchymal and immune cells that together orchestrate skin homeostasis\, including cyclical hair growth and barrier function. Previously\, my lab generated a comprehensive molecular and spatial atlas of epithelial and stromal cells during hair growth and rest. These studies revealed underlying molecular programs during progenitor-cell commitment and lineage differentiation\, as well as spatiotemporal fibroblast heterogeneity and potential epithelial-stromal interactions. The importance of cell-type specific signaling during homeostasis\, and the unrecognized potential of cell-type restricted signaling-changes were exemplified by our recent discovery of how to induce new hair follicles in adult mouse skin by modulating a single signaling pathway. Building on the molecular knowledge and computational skills gained\, our ongoing work uncovers new insights in the molecular orchestration of embryonic hair follicle development\, as well as the coordination of adult skin stem cell differentiation by tissue resident immune cells.Host: Gabriella Lindgren\, SLU
URL:https://www.scilifelab.se/event/the-svedberg-seminar-series-ass-prof-maria-kasper/
LOCATION:Online event via Zoom
CATEGORIES:Event
ORGANIZER;CN="The Svedberg Seminar Series":MAILTO:thesvedberg@scilifelab.uu.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20211108T160000
DTEND;TZID=Europe/Stockholm:20211108T170000
DTSTAMP:20260403T230801
CREATED:20210609T090256Z
LAST-MODIFIED:20210826T100440Z
UID:10000399-1636387200-1636390800@www.scilifelab.se
SUMMARY:Annual lecture in structural biology by Jennifer Lippincott-Schwartz
DESCRIPTION:Jennifer Lippincott-Schwartz from the Howard Hughes Medical Institute will give the lecture entitled ‘Emerging Imaging Technologies to Study Cell Architecture\, Dynamics\, and Function’ on November 8\, 2021 at 4.00pm in the Biomedicum lecture theatre. Using cutting-edge\, superresolution imaging technology to visualize cellular activity at the nano-scale\, Lippincott-Schwartz lab has redefined how we look at protein dynamics in the cell. \n\n\n\nThe annual lecture series is set up in the recognition of the development of electron microscopy and will be delivered by eminent scientists in the field of structural biology and molecular visualisation. The event is open to anyone. A holder of the lectureship will particularly spend time with students and postdocs. Therefore\, Jennifer will also give an account of her career path and discuss with students and postdocs at 09.30am in the SciLifeLab Air&Fire auditorium. \n\n\n\nAbout Jennifer Lippincott-Schwartz \n\n\n\nResearch in Lippincott-Schwartz lab is aimed at developing live cell imaging to elucidate the dynamics inside eukaryotic cells. She pioneered photobleaching and photoactivation techniques which allow investigation of subcellular localization\, turnover and trafficking of important cellular proteins related to membrane compartmentalization. Her work on photoactivatable GFP led to the development of one of the first super-resolution imaging technologies\, photoactivation localization microscopy. Jennifer then used her methods to assess organelles dynamics and interactions revealing a novel picture of how the peripheral endoplasmic reticulum is structured. In addition\, the Golgi apparatus is central to Jennifer’s studies\, where her team demonstrated a novel pathway of enzymes recycling important for the organelle’s biogenesis and maintenance. Together\, the obtained findings have provided insights into how genetic diseases affect proteins that help shape the endoplasmic reticulum. \n\n\n\nIn 2016\, Lippincott-Schwartz initiated the Neuronal Cell Biology Program at Janelia. She is Fellow of the American Academy of Arts and Sciences Fellow\, and also Honorary Fellow of the Royal Microscopical Society.  \n\n\n\nBackground information \n\n\n\nThe annual lecture in structural biology is named in honour of Fritiof Sjöstrand\, who pioneered the electron microscopy in Sweden. In the early 1950’s he developed an advanced microtome for thin sectioning\, and by applying it for structural analysis of mitochondria produced a major breakthrough with the determination of the double membrane system. He then engineered a next generation of microtomes using electrical heating of the specimen to advance it toward the knife\, and the instrument became known as the ‘‘Sjöstrand Ultramicrotome”. In 1959\, Fritiof Sjöstrand moved to UCLA\, where his research focused on mitochondrial membranes and retinal synapses. Fritiof Sjöstrand founded and was Editor in Chief of the Journal of Structural Biology for 33 years. Lectures in the previous years were given by Venki Ramakrishnan and Jennifer Doudna. \n\n\n\nContact \n\n\n\nAlexey Amunts\, amunts@scilifelab.se
URL:https://www.scilifelab.se/event/emerging-imaging-technologies-to-study-cell-architecture-dynamics-and-function/
LOCATION:Biomedicum\, Solnavägen 9\, Solna
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20211109T100000
DTEND;TZID=Europe/Stockholm:20211109T110000
DTSTAMP:20260403T230801
CREATED:20211102T153126Z
LAST-MODIFIED:20211102T153315Z
UID:10000478-1636452000-1636455600@www.scilifelab.se
SUMMARY:The curious case of a leak channel that never wants to be open
DESCRIPTION:Stephan Pless\, PhD \n\n\n\nProfessor of Molecular and Cellular PharmacologyUniversity of Copenhagen\, Denmark \n\n\n\nThe Pless lab is interested in the molecular function and pharmacology of ion channels. These complex membrane proteins regulate cellular excitability by controlling the flux of ions across cell membranes in response to a diverse set of stimuli. Their dysfunction is associated with numerous diseases\, resulting in an ever-increasing demand for new drugs targeting these fascinating molecules. \n\n\n\n\n\n\n\nDownload
URL:https://www.scilifelab.se/event/the-curious-case-of-a-leak-channel-that-never-wants-to-be-open/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2021/11/Skärmavbild-2021-11-02-kl.-16.27.31.png
ORGANIZER;CN="Molecular Biophysics Stockholm":MAILTO:join-mbp@scilifelab.se.
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20211109T150000
DTEND;TZID=Europe/Stockholm:20211109T160000
DTSTAMP:20260403T230801
CREATED:20211101T085537Z
LAST-MODIFIED:20211101T085648Z
UID:10000476-1636470000-1636473600@www.scilifelab.se
SUMMARY:Insights into EMBO’s Fellowship Programme
DESCRIPTION:Kelly Sheehan-Rooney\, Head of the Fellowship Programme at EMBO\, will give an overview of the eligibility and evaluation criteria of EMBO’s Postdoctoral Fellowships\, Scientific Exchange Grants\, and the New Venture Fellowships. She will also give some top tips for grant writing\, and an insight into her career move from academic research to international research development. \n\n\n\nKelly Sheehan-Rooney is Head of the Fellowship Programme at EMBO. She obtained her PhD in Developmental Biology from the University of Manchester\, UK\, before carrying out a three-year postdoctoral position at the University of Texas in Austin\, USA. Now with 10 years’ experience in international research development\, Kelly has worked with thousands of scientists across the world; supporting them in their various careers\, building collaborative networks\, and fostering a research environment where scientists can achieve their best work. \n\n\n\nResearchers in all stages of their career are welcome to attend and could find the talk useful. The fellowships are a great opportunity for early-stage researchers as well as for group leaders to further their research interests and consider new avenues to expand into high quality research ideas. \n\n\n\nMeeting Flyer
URL:https://www.scilifelab.se/event/insights-into-embos-fellowship-programme/
LOCATION:Online event via Zoom
CATEGORIES:Event
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20211110T140000
DTEND;TZID=Europe/Stockholm:20211110T150000
DTSTAMP:20260403T230801
CREATED:20211014T151000Z
LAST-MODIFIED:20211020T130718Z
UID:10000466-1636552800-1636556400@www.scilifelab.se
SUMMARY:[Drug Discovery Seminar] How protein degradation led to faculty entrepreneurship at Yale: A personal Perspective
DESCRIPTION:SciLifeLab Drug Discovery Seminars\, hosted by the DDD platform\, is a series of educational lectures about recent developments\, technologies\, and trends in drug discovery and development that aims to enlighten\, and spark a discussion\, within the Swedish drug discovery community. \n\n\n\nCraig Crews\n\n\n\n\n\n\n\n \n\n\n\nJohn C. Malone Professor of Molecular\, Cellular\, and Developmental Biology and Professor of Chemistry\, of Pharmacology\, and of Management; Executive Dirictor\, Yale Center for Molecular Discovery\, Yale University \n\n\n\nAbstract \n\n\n\nProf. Crews is the 2021 recipient of the Scheele prize from the Swedish Pharmaceutical Society for his seminal work on protein degradation. In this talk Prof. Crews will discuss his efforts to translate research from his lab into new biopharma ventures.  To date\, these entrepreneurial  efforts have resulted in a FDA approved drug (Kyprolis) and a new therapeutic modality (PROTACs).  While each of his four companies has been launched based on different science\, they have all followed a similar business model and Prof. Crews will discuss efforts at Yale to ’systematize’ faculty entrepreneurism via a core ‘biotech accelerator’ facility. \n\n\n\nregistration\n\n\n\nBiography \n\n\n\nCrews is the John C. Malone Professor of Molecular\, Cellular and Developmental Biology and holds joint appointments in the departments of Chemistry and Pharmacology at Yale University. He graduated from the U.Virginia with a B.A. in Chemistry and received his Ph.D. from Harvard University in Biochemistry. Dr. Crews has a foothold in both the academic and biotech arenas; on the faculty at Yale since 1995\, his laboratory has pioneered the use of small molecules to control intracellular protein levels.  \n\n\n\nIn 2003\, he co-founded Proteolix\, Inc.\, whose proteasome inhibitor\, Kyprolis™ received FDA approval for the treatment of multiple myeloma. Since Proteolix’s purchase by Onyx Pharmaceuticals in 2009\, Dr. Crews has focused on a new drug development technology\, which served as the founding intellectual property for his latest New Haven-based biotech venture\, Arvinas\, Inc.  \n\n\n\nCurrently\, Dr. Crews serves on several editorial boards and was Editor of Cell Chemical Biology (2008-2018). In addition\, he has received numerous awards and honors\, including the 2013 CURE Entrepreneur of the Year Award\, 2014 Ehrlich Award for Medicinal Chemistry\, 2015 Yale Cancer Center Translational Research Prize\, a NIH R35 Outstanding Investigator Award (2015)\, the AACR Award for Chemistry in Cancer Research (2017)\, Khorana Prize from the Royal Society of Chemistry (2018)\, Pierre Fabre Award for Therapeutic Innovation (2018)\, the Pharmacia-ASPET Award for Experimental Therapeutics (2019)\, the Heinrich Wieland Prize (2020) and the Scheele Prize (2021). In 2019\, he was named an American Cancer Society Professor.
URL:https://www.scilifelab.se/event/drug-discovery-seminar-faculty-entrepreneurship-at-yale-a-personal-perspective/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20211111T130000
DTEND;TZID=Europe/Stockholm:20211111T140000
DTSTAMP:20260403T230801
CREATED:20210903T122243Z
LAST-MODIFIED:20211101T124236Z
UID:10000432-1636635600-1636639200@www.scilifelab.se
SUMMARY:Campus Solna Seminar Series: Michael Hawgood and Akshay Sridhar
DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an  initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 13:00-13:50 and following current regulations\, they will be broadcast via zoom. \n\n\n\n \n\n\n\nThis week\n\n\n\nExploring DNA Replication Using Super Resolution and Expansion MicroscopyMichael Hawgood (Jiri Bartek\, alpha 5)  \n\n\n\n \n\n\n\nLipid modulation of membrane protein functionAkshay Sridhar (Lucie Delemotte/Erik Lindahl) \n\n\n\nRegistration\n\n\n\nRegister to receive the zoom-link. The same zoom link applies for all Campus Solna Seminar Series\, i.e. only one registration is necessary.
URL:https://www.scilifelab.se/event/campus-solna-seminar-series-michael-hawgood-and-akshay-sridhar/
CATEGORIES:Community
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20211112T130000
DTEND;TZID=Europe/Stockholm:20211112T143000
DTSTAMP:20260403T230801
CREATED:20211029T062301Z
LAST-MODIFIED:20211029T062304Z
UID:10000475-1636722000-1636727400@www.scilifelab.se
SUMMARY:Open webinar: How can SciLifeLab\, MAX IV and ESS contribute to drug discovery and development?
DESCRIPTION:During this seminar the three large-scale research infrastructures – SciLifeLab\, MAX IV and ESS – will present their offer to the Life Science industry in form of advanced technologies in the shape of research infrastructure\, as well as relevant data support and structures. Together they can provide technologies ranging from genomics\, proteomics\, genome engineering and drug discovery\, to X-ray beamlines and the most powerful neutron source worldwide. \n\n\n\nThe webinar is a joint venture between Lif and InfraLife\, the initiative that serve as a hubconnecting stakeholders\, displaying the potential of the advanced technologies\, and making these unprecedented tools accessible to be utilized in addressing complex research questions.Who should attend? \n\n\n\nEveryone who works within pharma industry and the Life Science-ecosystem in Sweden and iscurious about what services these three major national infrastructures can offer and how to starta research project. \n\n\n\nRegistration\n\n\n\nPreliminary program: \n\n\n\nWelcomeFrida Lundmark\, Lif \n\n\n\nThe InfraLife projectElin Jonsson and Josefin Lundgren Gawell\, project coordinators InfraLife \n\n\n\nSciLifeLab – possibilities in drug discovery & DevelopmentPer Arvidsson\, Director Drug Discovery & Development platform\, SciLifeLab \n\n\n\nCryo-EM recent development and great possibilities for drug researchMarta Carroni\, Platform Director\, Cell and Molecular Imaging\, SciLifeLab \n\n\n\nThe MAX IV synchrotron and possibilities for Life ScienceSelma Maric\, Industrial Relations\, Life Science and Soft Matter\, MAX IV \n\n\n\nNeutron research possibilities for drug development and the European Spallation Source (ESS)Zoë Fisher\, Group Leader for Deuteration and Macromolecular Crystallisation\, ESS \n\n\n\nIndustry examples from X-ray and neutron experimentsEmanuel Larsson\, Postdoctoral fellow\, Solid Mechanics\, Expert Lunarc (Centre for Scientific and Technological Computing)\, Lund University \n\n\n\nTime for questions \n\n\n\nWrap up and future perspectives
URL:https://www.scilifelab.se/event/open-webinar-how-can-scilifelab-max-iv-and-ess-contribute-to-drug-discovery-and-development/
LOCATION:Online event via Zoom
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2020/05/AdobeStock_297709311-scaled.jpeg
ORGANIZER;CN="InfraLife":MAILTO:events@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20211112T140000
DTEND;TZID=Europe/Stockholm:20211112T150000
DTSTAMP:20260403T230801
CREATED:20211014T151650Z
LAST-MODIFIED:20211020T131013Z
UID:10000467-1636725600-1636729200@www.scilifelab.se
SUMMARY:[Drug Discovery Seminar] PROTAC Degraders: From Fundamental Chemical Biology to Translation and Entrepreneurship
DESCRIPTION:SciLifeLab Drug Discovery Seminars\, hosted by the DDD platform\, is a series of educational lectures about recent developments\, technologies\, and trends in drug discovery and development that aims to enlighten\, and spark a discussion\, within the Swedish drug discovery community. \n\n\n\nAlessio Ciulli\n\n\n\nProfessor of Chemical Structural Biology \n\n\n\nCentre for Targeted Protein Degradation\, School of Life Sciences\, Division of Biological Chemistry and Drug Discovery\, University of Dundee \n\n\n\n \n\n\n\nAbstract\n\n\n\nProteolysis-targeting chimeras (PROTACs) are a new class of chemical tools and drugs that target disease-causing proteins for degradation. They are designed to harness the cell’s natural disposal system (the ubiquitin-proteasome) to specifically remove proteins. A PROTAC is a two-headed (i.e. bifunctional) molecule where one end binds an enzyme (an E3 ubiquitin ligase) and the other binds the target protein\, bringing the two proteins into close proximity as a ternary complex. The ligase is then able to label the target protein for ubiquitination and so degradation by the cell’s disposal system. Whereas conventional drugs only inhibit disease proteins by binding and locking up their most important functional parts for the duration of the drug’s action\, PROTACs can bind at any positions and rapidly cause the disease protein’s permanent and long-lasting destruction. Due to this revolutionary mode of action\, PROTACs can attack targets previously thought ‘undruggable’.  \n\n\n\nIn my lecture\, I will outline some key discoveries from my laboratory that have advanced the chemical structural biology of PROTACs\, and are providing fundamental insights into our understanding of their molecular recognition\, mechanism of action and drug design. I will also offer insights from our efforts to translate this fundamental science into molecular therapeutics to benefit patients\, via both partnerships with big pharma and formation of company spin-outs. Finally I will highlight the vision and mission of our recently announced new Centre for Targeted Protein Degradation at Dundee. \n\n\n\nShort Bio\n\n\n\n\n\n\n\nAlessio Ciulli holds the Personal Chair of Chemical Structural Biology at the School of Life Sciences\, University of Dundee. He is also the Director of the newly announced Dundee’s Centre for Targeted Protein Degradation (CeTPD). Dr Ciulli’s laboratory has made important contributions to selective chemical intervention on protein-protein interactions targets and to the development of proteolysis-targeting chimeric molecules (PROTACs) as a viable strategy for targeted protein degradation. Amongst his most significant discoveries are the fragment-based design of ligands for the E3 ligase von Hippel-Lindau (VHL)\, and their use to design one of the first VHL-based PROTACs: the BET degrader MZ1. Dr Ciulli’s Lab later illuminated fundamental insights into PROTACs’ mechanism of action\, solving the first crystal structure of a PROTAC ternary complex. Dr. Ciulli is the scientific founder of Amphista therapeutics\, a company that develops new protein degradation platforms. Before joining Dundee\, Dr Ciulli was a group leader at the University of Cambridge\, where he previously earned his PhD degree. Amongst his honours are the EFMC Prize for Young Medicinal Chemist in Academia\, the RSC Capps Green Zomaya Award in medicinal computational chemistry\, and election as Fellow of the Royal Society of Chemistry. \n\n\n\n \n\n\n\nRegistration
URL:https://www.scilifelab.se/event/drug-discovery-seminar-protac-degraders-from-fundamental-chemical-biology-to-translation-and-entrepreneurship/
LOCATION:Navet\, SciLifeLab Uppsala\, SciLifeLab Uppsala\, BMC C11\, Husargatan 3\, Uppsala\, 75237\, Sweden
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20211115T080000
DTEND;TZID=Europe/Stockholm:20211119T170000
DTSTAMP:20260403T230801
CREATED:20210706T064513Z
LAST-MODIFIED:20210706T065837Z
UID:10000403-1636963200-1637341200@www.scilifelab.se
SUMMARY:RNA-seq data analysis ONLINE
DESCRIPTION:This workshop will introduce the best practice bioinformatics methods for processing and analyses of RNA-seq data via a series of  online lectures and computer practicals. The workshop will be held online. \n\n\n\nImportant dates\n\n\n\nApplication open: August 27\, 2021Application deadline: October 15\, 2021 \n\n\n\nResponsible teacher/s \n\n\n\nJohan Reimegård\, Julie Lorent \n\n\n\nContact information for questions regarding the course\n\n\n\nedu.rnaseq@nbis.se \n\n\n\nCourse fee\n\n\n\nThis online workshop has no fee. However\, if you accept a position and do not participate you will be invoiced* 1300 kr \n\n\n\n*Please note that NBIS cannot invoice individuals \n\n\n\nCourse content\n\n\n\nTopics covered will include: \n\n\n\nRNA seq introductionRNA seq read mapping programsRNA seq QC analysisDifferential expression analysisGene set enrichment analysis\n\n\n\nMore details about the course can be found at the previous year’s webpage \n\n\n\nThe course will follow similar structure and topics.  \n\n\n\nEntry requirements\n\n\n\nRequired for being able to follow the course and complete the computer exercises: \n\n\n\nBasic knowledge in Linux and RSteady and fast internet connection to be able to follow the workshop.Your own laptop with the following specs:At least 6 GB of RAM. Operating system Win10\, OS X or LinuxAt least 30 GB of free storage\n\n\n\nDesirable: \n\n\n\nExperience working with NGS data analysis or completed the NBIS workshop “Introduction to Bioinformatics using NGS data”Experience working in R or completed the NBIS course “R Programming Foundations for Life Scientists”\n\n\n\nDue to our best practise to have a high teacher to student ratio we have set the number of participants to a maximum of 20 participants. If we receive more applications\, participants will be selected based on several criteria. Selection criteria include correct entry requirements\, motivation to attend the course as well as gender and geographical balance. \n\n\n\n\n\n\n\n\nLink to application
URL:https://www.scilifelab.se/event/rna-seq-data-analysis-online/
CATEGORIES:Course
ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20211115T090000
DTEND;TZID=Europe/Stockholm:20211115T093000
DTSTAMP:20260403T230801
CREATED:20211111T133009Z
LAST-MODIFIED:20211111T133419Z
UID:10000489-1636966800-1636968600@www.scilifelab.se
SUMMARY:Meet the BioInnivation Institute
DESCRIPTION:BioInnovation Institute (BII) is an international commercial foundation with a non-profit objective supported by the Novo Nordisk Foundation. BII operates an incubator to accelerate world-class life science innovation that drives the development of new solutions through the creation of life science start-ups for the benefit of people and society. BII offers help to early-stage projects and start-ups in health tech\, bio-industrials and therapeutics through their two programs VentureLab and Creation House.  \n\n\n\nThe programmes are open for applications twice a year. The next application deadlines are November 25th 2021 for Creation House and February 24th 2022 for Venture Lab. \n\n\n\nLearn more about the call on Monday\, November 15\, 09:00.
URL:https://www.scilifelab.se/event/meet-the-bioinnivation-institute/
LOCATION:Online event via Zoom
CATEGORIES:Event
ORGANIZER;CN="External Relations Office":MAILTO:externalrelations@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20211115T090000
DTEND;TZID=Europe/Stockholm:20211119T143000
DTSTAMP:20260403T230801
CREATED:20210909T083631Z
LAST-MODIFIED:20210909T084003Z
UID:10000443-1636966800-1637332200@www.scilifelab.se
SUMMARY:ELIXIR Tools for Reproducible Research - ONLINE
DESCRIPTION:Elixir / NBIS course open for PhD students\, postdocs\, group leaders and core facility staff interested in making their computational analysis more reproducible. International applications are welcome\, but we will give approximately half of the participant slots to applicants from Swedish universities at minimum\, due to the national role NBIS plays in Sweden. \n\n\n\nThe course is organized by NBIS (ELIXIR-SE). \n\n\n\nResponsible teachers: John Sundh\, Erik Fasterius\, Verena Kutschera \n\n\n\nContact information: edu.trr@nbis.se \n\n\n\n\n\n\n\n\nApplication\n\n\n\nCourse website\n\n\n\n\n\n\n\n\n\n\nImportant dates\n\n\n\nApplication open: September 1 \n\n\n\nApplication deadline: October 15 \n\n\n\nConfirmation to accepted participants: October 22 \n\n\n\nCourse fee\n\n\n\nThis online training event has no fee. However\, if you accept a position at the workshop and do not participate (no-show) you will be invoiced 2\,000 SEK.*Please note that NBIS cannot invoice individuals \n\n\n\nCourse description\n\n\n\nOne of the key principles of proper scientific procedure is the act of repeating an experiment or analysis and being able to reach similar conclusions. Published research based on computational analysis\, e.g. bioinformatics or computational biology\, have often suffered from incomplete method descriptions (e.g. list of used software versions); unavailable raw data; and incomplete\, undocumented and/or unavailable code. This essentially prevents any possibility of attempting to reproduce the results of such studies. The term “reproducible research” has been used to describe the idea that a scientific publication based on computational analysis should be distributed along with all the raw data and metadata used in the study\, all the code and/or computational notebooks needed to produce results from the raw data\, and the computational environment or a complete description thereof. \n\n\n\nReproducible research not only leads to proper scientific conduct but also provides other researchers the access to build upon previous work. Most importantly\, the person setting up a reproducible research project will quickly realize the immediate personal benefits: an organized and structured way of working. The person that most often has to reproduce your own analysis is your future self! \n\n\n\nCourse content\n\n\n\nIn this course you will learn how to make your data analyses reproducible. In particular\, you will learn: \n\n\n\ngood practices for data analysishow to use the version control system git to track edits and collaborate on codinghow to use the package and environment manager Condahow to use the workflow managers Snakemake and Nextflowhow to use R Markdown to generate automated reportshow to use Jupyter notebooks to document your ongoing analysishow to use Docker and Singularity to distribute containerized computational environments\n\n\n\nEntry requirements\n\n\n\nRequired for being able to follow the course and to complete computer exercises: \n\n\n\nfamiliarity with using the terminal (e.g. be familiar with commands such as ls\, cd\, touch\, mkdir\, pwd\, wget\, man\, etc.)a computer with a webcamYou will be asked to install the video conferencing software zoom (https://zoom.us/) to be able to participate in the coursesome knowledge in R and/or python is beneficial but not strictly required\n\n\n\nSelection criteria\n\n\n\nThe course can accommodate 20 participants. Selection criteria include correct entry requirements\, motivation to attend the course as well as gender and geographical balance. Academic affiliated registrants are prioritized prior to participants from the industry.  \n\n\n\nPlease note that NBIS training events do not provide any formal university credits. The training content is estimated to correspond to a certain number of credits\, however the estimated credits are just guidelines. If formal credits are crucial\, the student needs to confer with the home department before submitting a course application in order to establish whether the course is valid for formal credits or not.
URL:https://www.scilifelab.se/event/elixir-tools-for-reproducible-research-online/
CATEGORIES:Course
ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20211116T110000
DTEND;TZID=Europe/Stockholm:20211116T115000
DTSTAMP:20260403T230801
CREATED:20211110T152528Z
LAST-MODIFIED:20211110T160636Z
UID:10000485-1637060400-1637063400@www.scilifelab.se
SUMMARY:Uppsala PhD&Postdoc seminars: Niki Sarri & Ankit Gupta
DESCRIPTION:Welcome to SciLifeLab Uppsala PhD&Postdoc seminars!We are very happy to host exciting talks by PhD students and Postdocs from a great variety of fields within SciLifeLab.The seminars will take online place every Tuesday from 11:00 to 11:50 \n\n\n\n\n\n\n\n\n\n\n\nFor this occasion the seminars will be: Niki Sarri\, PhD student in Carl-Henrik Heldin’s research groupTitle: Deubiquitinating enzymes USP4 and USP17 fine-tune the trafficking of PDGFRβ and affect PDGF-BB-induced STAT3 signallingAnkit Gupta\, PhD student in Wählby lab\, Division of Visual Information and InteractionTitle: SimSearch: A Human-in-the-Loop Learning Framework for Fast Detection of Regions of Interest in Microscopy Images
URL:https://www.scilifelab.se/event/uppsala-phdpostdoc-seminars-niki-sarri-ankit-gupta/
LOCATION:Online event via Zoom
CATEGORIES:Community
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20211118T130000
DTEND;TZID=Europe/Stockholm:20211118T140000
DTSTAMP:20260403T230801
CREATED:20210903T122533Z
LAST-MODIFIED:20211102T091351Z
UID:10000433-1637240400-1637244000@www.scilifelab.se
SUMMARY:Campus Solna Seminar Series: Haris Babacic and Gustavo Jeuken
DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an  initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 13:00-13:50 and following current regulations\, they will be broadcast via zoom. \n\n\n\n \n\n\n\nThis week\n\n\n\nPlasma proteome alterations in glioblastoma: preliminary resultsHaris Babacic (Janne Lehtiö\, alpha 1)  \n\n\n\n \n\n\n\nPathway Activity-based Survival AnalysisGustavo Jeuken (Lukas Käll\, gamma 6) \n\n\n\nRegistration\n\n\n\nRegister to receive the zoom-link. The same zoom link applies for all Campus Solna Seminar Series\, i.e. only one registration is necessary.
URL:https://www.scilifelab.se/event/campus-solna-seminar-series-haris-babacic-and-gustavo-jeuken/
CATEGORIES:Community
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20211118T141500
DTEND;TZID=Europe/Stockholm:20211118T154500
DTSTAMP:20260403T230801
CREATED:20211019T150814Z
LAST-MODIFIED:20211019T150955Z
UID:10000471-1637244900-1637250300@www.scilifelab.se
SUMMARY:Nurturing wellbeing in academia
DESCRIPTION:DEI committee continues series of events “Our community\, ourselves” dedicated to raising awareness and improving mental health in Academia. The following event “Nurturing wellbeing in academia” is brought to us by Deborah Rupert and Frida Rångtell\, well-being coaches from “Dear Academia”. Dear Academia offers interactive seminars and holistic workshops focused on individual mental wellbeing\, burnout prevention\, peer-to-peer support and creation of healthy environment in academic settings.  \n\n\n\nMore information here: https://deborahrupert.com/dear-academia/ \n\n\n\nWe are each other’s working environment. Nurturing taking care of ourselves and of each other is one key aspect of cultivating a healthy academic work environment – together with active conscious leadership. \n\n\n\nAt an interactive webinar where we will explore how to create a human friendly work environment covering how to: \n\n\n\nImprove your sleep and implement healthy routinesDevelop strategies to manage your stress and grow resilienceBe an ally to cultivate wellbeing at work\n\n\n\nTaking care of our mental health is paramount to the individual wellbeing\, performance and to a healthy working culture. \n\n\n\njoin zoom meeting 18 November 14:15\n\n\n\nSpeakers: \n\n\n\nDeborah Rupert\, PhD\n\n\n\nWellbeing and career coach\, Dear Academia \n\n\n\nDéborah Rupert is the founder of Dear Academia and is a wellbeing and career coach. She is certified from the International Coaching Federation and holds a PhD in biological physics from Chalmers Technical University\, Sweden. She is dedicated to burnout prevention and supporting researchers with mental clarity and career strategy. She is a career coach for researchers in career transition at Trygghetsstiftelsen and the nordic director of Enkindle Global\, focusing on burnout prevention for individual change makers and leaders within organisations. \n\n\n\nFrida Rångtell\, PhD\n\n\n\nSleep and habits educator\, Dear Academia \n\n\n\nFrida Rångtell has a PhD in sleep and memory from Uppsala University\, Sweden. Today she works as a sleep and habits educator\, scientific advisor and runs Slumra of Sweden.
URL:https://www.scilifelab.se/event/nurturing-wellbeing-in-academia/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Community
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20211122T080000
DTEND;TZID=Europe/Stockholm:20211126T170000
DTSTAMP:20260403T230801
CREATED:20210706T071301Z
LAST-MODIFIED:20210706T071802Z
UID:10000404-1637568000-1637946000@www.scilifelab.se
SUMMARY:Introduction to bioinformatics using NGS data - ONLINE
DESCRIPTION:National workshop for PhD students\, postdocs\, researchers\, and other employees within Swedish academia. This workshop is organized by the National Bioinformatics Infrastructure Sweden (NBIS) and National Genomics Infrastructure (NGI). \n\n\n\nDue to the Covid-19 situation\, this workshop will be held online. \n\n\n\nIf you have questions regarding the workshop\, please email: edu.intro-ngs@nbis.se \n\n\n\nImportant dates\n\n\n\nApplication opens:  August 16\, 2021  \n\n\n\nApplication closes: October 10\, 2021 \n\n\n\nConfirmation to accepted students:  October 15\, 2021 \n\n\n\nResponsible teachers  \n\n\n\nMalin Larsson\, Martin Dahlö\, Roy Francis \n\n\n\nCourse fee\n\n\n\nThis online training event has no fee. However\, if you accept a position at the workshop and do not participate (no-show) you will be invoiced 2000 SEK. \n\n\n\nPlease note that NBIS cannot invoice individuals \n\n\n\nCourse content\n\n\n\nThis intense one-week workshop provides an introduction to the analysis of next generation sequencing data. Lectures on the theory of concepts will be paired with practical computational exercises in the Linux environment. The practical exercises will focus on data from the Illumina platform\, but we will discuss other sequencing platforms and the advantages and challenges to using their data during the lectures. \n\n\n\nAfter this workshop you should be able to: \n\n\n\nDescribe the basic principles of next generation sequencing.Use the Linux command line interface to manage simple file processing operations\, and organize directory structures.Connect to and work on a remote high performance compute cluster.Apply programs in Linux for analysis of NGS data.Summarise the applications of current NGS technologies\, including the weakness and strengths of the approaches and when it is appropriate to use which one of them.Explain common NGS file formats.Interpret quality control of NGS reads.Explain the steps involved in variant calling using whole genome sequencing data.Independently perform a basic variant calling workflow on example data.Explain the steps involved in differential gene expression using RNA seq data.Independently perform differential gene expression analysis on example data.\n\n\n\nEntry requirements\n\n\n\nA background in genetics\, cell biology\, biomedicine\, biochemistry\, bioinformatics or comparable is desirable. To get the maximum benefit from the workshop we would like you to \n\n\n\nHave relevant previous experience in sequencing or analysis.Have a research project where you are currently using next generation sequencing or are planning to use next generation sequencing.It is beneficial if you are directly performing analyses or if you have a support role and will be able to participate in a wide range of projects and transfer your knowledge to others.\n\n\n\nSelection criteria include correct entry requirements\, motivation to attend the workshop as well as gender and geographical balance. \n\n\n\n\n\n\n\n\nLink to application\n\n\n\n\nThe application opens on August 16\, 2021.
URL:https://www.scilifelab.se/event/introduction-to-bioinformatics-using-ngs-data-online-2/
CATEGORIES:Course
ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se
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BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20211122T083000
DTEND;TZID=Europe/Stockholm:20211122T170000
DTSTAMP:20260403T230801
CREATED:20211018T141327Z
LAST-MODIFIED:20211104T080816Z
UID:10000468-1637569800-1637600400@www.scilifelab.se
SUMMARY:DDLS Conference: Strategic research areas - postponed!
DESCRIPTION:Join us at the first conference within The SciLifeLab and Wallenberg national program for Data-Driven Life Science! \n\n\n\n\n\n\n\nThe practice of life science is continuously becoming more data-dependent. The amount and complexity of data is growing exponentially\, and more scientific discoveries are enabled when data is openly available to researchers across the world. This is the basis for the SciLifeLab and Wallenberg National Program on Data-Driven Life Science (DDLS). \n\n\n\nThe program focuses on four strategic areas for data-driven research\, all of which are essential for improving the lives of people as well as animals and nature\, detecting and treating diseases\, protecting biodiversity and creating sustainability:  \n\n\n\nCell and molecular biologyEpidemiology and infection biologyEvolution and biodiversityPrecision medicine and diagnostics\n\n\n\n \n\n\n\nThe conference will focus on enthusing research within the four research areas and aims to bring together researchers within the field for discussion and sharing the latest within the research areas. The meeting will offer an exciting compilation of keynotes\, special lectures within the four fields and opportunities to meet and discuss with prominent researchers.  \n\n\n\nAnyone with interest in the data-driven research field is welcome to participate. The full-day conference will be virtual (Zoom). \n\n\n\n \n\n\n\nThe program with confirmed speakers will be available shortly. \n\n\n\n\n\n\n\nThe conference is part of the SciLifeLab and Wallenberg national program for the DDLS program\, funded by the Alice and Knut Wallenbergs Foundation.
URL:https://www.scilifelab.se/event/ddls-conference-strategic-research-areas/
CATEGORIES:Event
LOCATION:
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BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20211122T151500
DTEND;TZID=Europe/Stockholm:20211122T163000
DTSTAMP:20260403T230801
CREATED:20211110T141705Z
LAST-MODIFIED:20211122T105625Z
UID:10000484-1637594100-1637598600@www.scilifelab.se
SUMMARY:The Svedberg seminar series: Prof. Tuuli Lappalainen
DESCRIPTION:Science for Life Laboratory\, Department of Gene Technology\, KTH Royal Institute of Technology\, Stockholm\, Sweden \n\n\n\nNew York Genome Center\, New York\, USA \n\n\n\nLINK TO SEMINAR \n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nTuuli Lappalainen is a Professor in Genomics at KTH Royal Institute of Technology\, an Associate Faculty Member at the New York Genome Center\, and the Director of the National Genomics Infrastructure of SciLifeLab. She is also an Adjunct Professor at the Department of Systems Biology at Columbia University. \n\n\n\nHer research focuses on functional genetic variation in human populations and its contribution to traits and diseases. She has pioneered the intergration of large-scale genome and transcriptome sequencing data to understand how genetic variation affects gene expression\, providing insight to cellular mechanisms underlying genetic risk for disease. \n\n\n\n\n\n\n\nFunctional variation in the human genome: lessons from the transcriptome\n\n\n\nDetailed characterization of molecular and cellular effects of genetic variants is essential for understanding biological processes that underlie genetic associations to disease. A particularly scalable approach has been linking genetic variants to effects in the transcriptome that is amenable for scalable measurements in human populations and in experimental settings\, including at the single cell level. Our multi-omic analysis in human cohorts in the TOPMed project has identified genetic and environmental effects on molecular variation together with their complex interplay with clinical phenotypes. Furthermore\, in this talk I will discuss how CRISPRi silencing of regulatory elements followed by single-cell analysis provides novel insights of mechanisms of genetic associations to complex traits. Altogether\, these diverse approaches for integration genome and transcriptome data uncover functional genetic architecture of human traits\, and enhances our understanding of both basic biology and precision medicine applications. \n\n\n\nHost: Jessica Nordlund\, Uppsala University
URL:https://www.scilifelab.se/event/the-svedberg-seminar-series-prof-tuuli-lappalainen/
LOCATION:Online event via Zoom
CATEGORIES:Event
ORGANIZER;CN="The Svedberg Seminar Series":MAILTO:thesvedberg@scilifelab.uu.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20211123T100000
DTEND;TZID=Europe/Stockholm:20211123T110000
DTSTAMP:20260403T230801
CREATED:20211110T112711Z
LAST-MODIFIED:20211123T124213Z
UID:10000483-1637661600-1637665200@www.scilifelab.se
SUMMARY:SciLifeLab AI Seminar Series: A sneak peek into the future of AI-assisted life science
DESCRIPTION:SciLifeLab Data Centre hosts a seminar series on the topic of applied AI in life science research. SciLifeLab AI Seminar Series combines scientific highlights from SciLifeLab-affiliated researchers and invited experts on the general topic of AI applications in Life Science.  \n\n\n\nThe seminar will be held physically at SciLifeLab Gamma 7 lunch room in Solna and online via Zoom. Physical participation is recommended since some AI models are not allowed to be shown via streaming and there will be no recording after the seminar according to the live demonstration policy of OpenAI.  \n\n\n\nContact: Prof. Ola Spjuth\, AI coordinator\, SciLifeLab Data Center. \n\n\n\nSpeaker: Wei OUYANGKTH Royal Institute of Technology and Science for Life Laboratory \n\n\n\nAbstract\n\n\n\nHave you imagined how AI may one day help you with your research by proposing new ideas\, running experiments\, analyzing data\, and even writing manuscripts? While current AI systems are too weak for those tasks\, we are closer than ever before! \n\n\n\nIn June 2020\, OpenAI revealed the most advanced AI model in the world\, GPT-3. It is the largest natural language processing model ever created with 175 billion parameters\, trained on about 45TB of text data\, and it cost $12 million for a single training run that may be utilized and reused for many tasks. Not only are these numbers impressive\, its “text in\, text out” interface can be used as a general purpose tool for almost any language task with impressively good performance. With the newly released Codex model (a descendant of GPT-3)\, it can even generate source code in popular programming languages by following instructions in natural languages\, e.g.\, English. GPT-3 not only brings us to a new paradigm of AI-assisted coding\, but it also has a great potential to address long-standing challenges in deep learning about generalization and interpretability. \n\n\n\nWe are excited to share with you what we have learned so far about GPT-3 and its applications in life science. In this talk\, we will give you an overview and discuss the promises and pitfalls of GPT-3. You will also see live demos in biomedical applications\, such as processing genomic sequences\, analyzing microscopy images\, and creating user-friendly software with graphical user interfaces (GUIs). Hopefully\, this session will serve as inspiration for your own research\, serve as a basis for discussion about AI in life science\, and convey how these tools may accelerate data-driven life science at SciLifeLab. \n\n\n\nBiography\n\n\n\nWei OUYANG is a researcher in Prof. Emma Lundberg’s group at the Science for Life Laboratory and KTH Royal Institute of Technology. He has a diverse background across several different fields including material science\, computer science and advanced microscopy imaging. In 2018\, Dr. Ouyang obtained his PhD in computational image analysis at Institut Pasteur\, Paris where he mainly focuses on applying deep learning for super-resolution microscopy. During this period\, he developed a deep learning method called ANNA-PALM which massively accelerates super-resolution localization microscopy by 100x. To address the challenges in the dissemination of AI tools\, he developed an open-source computational platform\, ImJoy\, which makes deep learning tools easier to build and more accessible to the user. He is actively involved in consortiums and community activities for promoting more open\, scalable\, accessible and reproducible scientific tools. Dr Ouyang has been focusing on AI augmented microscopy imaging and data-driven whole cell modeling. More recently\, he is excited about the recent progress in the field of AI and has a knee interest in exploring the next generation of data-driven life science powered by AI\, robotics\, blockchain and decentralized applications. \n\n\n\nRegister here
URL:https://www.scilifelab.se/event/scilifelab-ai-seminar-series-wei-ouyang/
CATEGORIES:Event
ORGANIZER;CN="SciLifeLab Data Centre":MAILTO:datacentre@scilifelab.se
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