BEGIN:VCALENDAR
VERSION:2.0
PRODID:-//SciLifeLab - ECPv6.15.18//NONSGML v1.0//EN
CALSCALE:GREGORIAN
METHOD:PUBLISH
X-WR-CALNAME:SciLifeLab
X-ORIGINAL-URL:https://www.scilifelab.se
X-WR-CALDESC:Events for SciLifeLab
REFRESH-INTERVAL;VALUE=DURATION:PT1H
X-Robots-Tag:noindex
X-PUBLISHED-TTL:PT1H
BEGIN:VTIMEZONE
TZID:Europe/Stockholm
BEGIN:DAYLIGHT
TZOFFSETFROM:+0100
TZOFFSETTO:+0200
TZNAME:CEST
DTSTART:20210328T010000
END:DAYLIGHT
BEGIN:STANDARD
TZOFFSETFROM:+0200
TZOFFSETTO:+0100
TZNAME:CET
DTSTART:20211031T010000
END:STANDARD
BEGIN:DAYLIGHT
TZOFFSETFROM:+0100
TZOFFSETTO:+0200
TZNAME:CEST
DTSTART:20220327T010000
END:DAYLIGHT
BEGIN:STANDARD
TZOFFSETFROM:+0200
TZOFFSETTO:+0100
TZNAME:CET
DTSTART:20221030T010000
END:STANDARD
BEGIN:DAYLIGHT
TZOFFSETFROM:+0100
TZOFFSETTO:+0200
TZNAME:CEST
DTSTART:20230326T010000
END:DAYLIGHT
BEGIN:STANDARD
TZOFFSETFROM:+0200
TZOFFSETTO:+0100
TZNAME:CET
DTSTART:20231029T010000
END:STANDARD
END:VTIMEZONE
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220511T140000
DTEND;TZID=Europe/Stockholm:20220511T153000
DTSTAMP:20260404T140916
CREATED:20220426T132422Z
LAST-MODIFIED:20220507T113616Z
UID:10000594-1652277600-1652283000@www.scilifelab.se
SUMMARY:Decoding the development of the human spinal cord by multi-omics
DESCRIPTION:Decoding the development of the human spinal cord by multi-omics \n\n\n\nXiaofei Li and Erik Sundström \n\n\n\nHDCA Seminar Series 2022 | Spinal cord \n\n\n\nThe human spinal cord has highly diverse cell types\, which are generated during development\, governed by a series of temporal and spatial events for proper spinal cord assembly and function. However\, the molecular regulation of cell fate specification in the human developing spinal cord remains largely unknown. Here\, by performing single-cell RNA sequencing\, spatial transcriptomics and in situ sequencing\, we integrate the datasets and provide a comprehensive single-cell and spatial transcriptomic atlas of the developing human spinal cord of the first trimester\, from postconceptional week 5 to 12. We observe that all major cell populations in human adult spinal cord have been specified within the first trimester with abundant cell states\, and identify the key genes associated with cell fate choices and their spatial expression. Unexpectedly\, we find that during early cell fate specification\, many human neural progenitor cells have lost their self-renewal capacity. Further the the expression of gliogensis genes is much higher in human compared to the correspondent rodents at the early stage\, suggesting earlier gliogenesis in human. Finally\, we demonstrate how to use our developmental map for molecular cues that direct sequential cellular differentiation and define cells and locations associated to both normal development and spinal cord diseases. \n\n\n\nsign up to attend\n\n\n\nPlease register also if you want to participate in the digital broadcast. The Zoom link will be sent out through the registration system.  \n\n\n\n– \n\n\n\nHuman developmental cell atlas (HDCA) is the Swedish effort within the human cell atlas (HCA)\, one of the largest international scientific projects. The project aim is to create a comprehensive molecular atlas of human prenatal development at the molecular resolution using state-of-the-art multi-omic technologies such as single-cell RNA-seq\, Spatial Transcriptomics\, in situ sequencing in order to provide deeper insight into how variations and deviations contribute to health and disease. \n\n\n\nThe HDCA Seminar Series 2022 invites you to join us on a journey of early human organogenesis of several organs at the single-cell and spatial resolution. Seminars will be held at SciLifeLab Gamma building on Wednesdays at 14:00 or 15:00 and also via Zoom. After each seminar\, we will have up to 30 min round up discussions with the speaker on how you can contribute to the atlas! \n\n\n\nWarm Welcome!
URL:https://www.scilifelab.se/event/decoding-the-development-of-the-human-spinal-cord-by-multi-omics/
LOCATION:Gamma 2 Lunchroom\, SciLifeLab\, Tomtebodavägen 23\, Solna\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/04/hdca_logo.png
ORGANIZER;CN="The Human Developmental Cell Atlas":MAILTO:hdca-sweden@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220511T110000
DTEND;TZID=Europe/Stockholm:20220511T160000
DTSTAMP:20260404T140916
CREATED:20220425T081942Z
LAST-MODIFIED:20220427T142909Z
UID:10000593-1652266800-1652284800@www.scilifelab.se
SUMMARY:Spatial Biology Tour
DESCRIPTION:The Spatial proteomics unit together with Lunaphore invite you to a workshop to learn about their new instrument and service with the COMET platform. The Spatial proteomics unit is the first lab in Sweden to offer multiplexed protein detection with the COMET platform\, which relies on sequential indirect immunofluorescence using off the shelf primary antibodies. The workshop also allows for a guideed tour of the lab and an instrument demonstration. Lunch will be served for registered participants.  \n\n\n\nplease sign up here to attend
URL:https://www.scilifelab.se/event/spatial-biology-tour/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Event
ORGANIZER;CN="Spatial Proteomics Unit":MAILTO:spatial.proteomics@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220510T120000
DTEND;TZID=Europe/Stockholm:20220513T160000
DTSTAMP:20260404T140916
CREATED:20220224T125406Z
LAST-MODIFIED:20220302T073938Z
UID:10000536-1652184000-1652457600@www.scilifelab.se
SUMMARY:Nordic ELIXIR-GOBLET Train-the-Trainer - Online
DESCRIPTION:This course offers guidance\, ideas and tips for designing training/teaching\, development and delivery on training activities\, all based on research-driven educational principles. This course will cover 4 main topics: \n\n\n\nLearning principles and how they apply to training and teachingDesign and plan session\, course\, materialsTeaching techniques to enhance learner engagement and participationAssessment and feedback in training and teaching\n\n\n\n\n\n\n\nNote! The course is highly interactive and hence it is important that you\, as a participant\, actively contribute to all sessions and elements of the course \n\n\n\nThis course will be delivered through Canvas learning management system.  \n\n\n\nCourse Time: 12:00 – 16:00 CETCourse Format: Online via Zoom and it will include breakout sessions \n\n\n\n\n\n\n\nContact\n\n\n\nFor queries\, please don’t hesitate to contact us at education@nbis.se \n\n\n\n\n\n\n\n\nCOURSE WEBSITE AND PROGRAM\n\n\n\nREGISTRATION\n\n\n\n\n\n\n\n\nDeadline for applying to the course is 3rd of April. You will receive notification regarding acceptance to the course or if you are on the reserve list no later than one week after the closing of the registration. \n\n\n\n\n\n\n\nCourse fee\n\n\n\nThere is no course attendance fee. \n\n\n\nNote! If you are accepted and decide not to attend without communicating the reason for the no-show with us\, we will invoice a no-show-fee of 200 Euros. \n\n\n\nThe invoicing information needs to be included in the registration in order to guarantee your spot in the training event\, if you are to be accepted. By giving the invoice information you hereby confirm that the group leader/PI/manager has given a consent regarding your possible participation in the Training event. NOTE – Uppsala University cannot invoice individuals. \n\n\n\n\n\n\n\nCourse content\n\n\n\nLearning Objectives: \n\n\n\nTo get acquainted with Learning principles and how they apply to trainingTo be able to select and use training techniques that can help enhance learner engagement and participationTo learn how to use assessment and feedback in trainingTo learn about session\, course\, and materials design\n\n\n\nLearning Outcome: \n\n\n\nBy the end of this course\, learners will be able to: \n\n\n\nName learning principles that a good teacher/instructor should have in mindDescribe at least three training techniques\, drawing on learning principlesDesign a training session and a courseDevelop assessment questionnairesEnumerate types of materials needed for each part of a training session or course\n\n\n\n\n\n\n\nTarget audience\n\n\n\nWhoever is interested in becoming a trainer/instructor\, or improving your training skills. If you have questions like the following ones\, this course may be very helpful to you. \n\n\n\nHow learning works?How do I use learning principles and theories to improve my teaching/training?How do I make my teaching/training more engaging and effective?How should I adjust my teaching/training to different types of learners?How do I ensure learning progress?How can I assess whether my students are actually understanding my lessons? Are they actually learning?What is the best balance between theory and practice?How can I best assess whether learning is occurring and/or has occurred?What works in a classroom and what doesn’t?\n\n\n\n\n\n\n\nSelection criteria\n\n\n\nWe will accept a maximum of 20 participants. Priority will be given to applicants from institutes and organisations across the Nordic research community and to participants from Nordic ELIXIR nodes. \n\n\n\n\n\n\n\nCourse team\n\n\n\nInstructors: \n\n\n\nJessica Lindvall (ELIXIR-SE Training Coordinator\, NBIS\, Sweden \n\n\n\nNina Norgren (ELIXIR-SE\, Training Coordinator\, NBIS\, Sweden) \n\n\n\nNazeefa Fatima (ELIXIR-NO\, Data Steward\, UiO\, Norway) \n\n\n\nErik Hjerde (ELIXIR-NO\, Training Coordinator\, UiT\, Norway) \n\n\n\nPriit Adler (ELIXIR-EE\, Trainer\, UT\, Estonia) \n\n\n\nAllegra Via (ELIXIR-IT\, Training Coordinator\, IBPM-CNR\, IT) \n\n\n\nPatricia Palagi (ELIXIR-CH\, Training coordinator\, SIB) \n\n\n\nOrganisers: \n\n\n\nELIXIR-SE \n\n\n\nELIXIR-NO \n\n\n\nELIXIR-FI \n\n\n\nELIXIR-EE
URL:https://www.scilifelab.se/event/nordic-elixir-goblet-train-the-trainer-online/
LOCATION:Online event via Zoom
CATEGORIES:Course
ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220510T120000
DTEND;TZID=Europe/Stockholm:20220510T130000
DTSTAMP:20260404T140916
CREATED:20220428T075520Z
LAST-MODIFIED:20220428T075524Z
UID:10000595-1652184000-1652187600@www.scilifelab.se
SUMMARY:National NMR Infrastructure at KBC. What can we do for you?
DESCRIPTION:In the frame of the “SciLifeLab Site Umeå / KBC Infrastructure Seminar Series”\, the seminars will be organised every second Tuesday during spring 2022 in turn with IceLab Lunch Pitches. The seminars will be held in a hybrid format IRL in Glasburen\, KBC\, and online via Zoom. Take the chance to get information on facilities\, possibilities and services that infrastructure\, both SciLifeLab-associated and local\, can offer! Learn more about the seminar series and Schedule for Spring 2022 here. \n\n\n\nOn May 10th\, 12:00-13:00\, SciLifeLab Site Umeå / KBC Infrastructure Seminar Series presents:  \n\n\n\n“National NMR Infrastructure at KBC. What can we do for you?” \n\n\n\nby Gerhard Gröbner\, Platform Director\, Professor\, Department of Chemistry\, Umeå University andJürgen Schleucher\, Platform Director\, Professor\, Department of Medical Biochemistry and Biophysics\, Umeå University \n\n\n\nSeminar description: The KBC based central NMR facility(Homepage) provides access to one of the most powerful liquid and solid-state NMR infrastructures in the Nordic countries and expertise for all researchers in the KBC and Campus environment. The facility serves large user groups spanning a remarkably wide range of fields\, such as materials science\, chemical biology\, organic synthesis\, structural biology\, plant- and environmental sciences\, biogeochemistry and medical metabolomics. Local researchers profit strongly from the facility’s status as a national infrastructure and different structural biology facilities and expertise (“Integrated Structure Biology”) at UMU. Fragment-based screening is also offered as national support in collaboration with CBCS/LCBU\, including comprehensive substance libraries. The facility is also closely linked to large research initiatives at the campus such as MIMS\, UCMP\, Bio4Energy\, UPSC\, the Swedish Metabolomics Center (SMC) and with SLU through collaborations and by offering service. \n\n\n\nActivities: If required\, a short guided tour to the NMR facility and drop-in discussions with NMR people about potential projects could be organised after the seminar. \n\n\n\nRegistration: \n\n\n\nSign up (latest by May 9th\, 10 a.m.) for on-site attendance to reserve your free lunch sandwich: \n\n\n\nor follow online via Zoom (registration is not required): https://umu.zoom.us/j/63138997026 . \n\n\n\nOrganisers: SciLifeLab Site Umeå and Chemical Biological Centre (KBC)
URL:https://www.scilifelab.se/event/national-nmr-infrastructure-at-kbc-what-can-we-do-for-you/
LOCATION:Glasburen Seminar Room\, Chemical Biological Centre (KBC) Building\, Umeå University\, Umeå\, 901 87\, Sweden
CATEGORIES:Event
ORGANIZER;CN="SciLifeLab Ume%C3%A5":MAILTO:umea@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220510T110000
DTEND;TZID=Europe/Stockholm:20220510T113000
DTSTAMP:20260404T140916
CREATED:20220505T144221Z
LAST-MODIFIED:20220505T145612Z
UID:10000602-1652180400-1652182200@www.scilifelab.se
SUMMARY:SciLifeLab Uppsala PhD&Postdoc seminar
DESCRIPTION:Welcome to SciLifeLab Uppsala PhD&Postdoc seminars! \n\n\n\nWe are very happy to host exciting talks by PhD students and Postdocs from a great variety of fields within SciLifeLab. \n\n\n\nSpeaker: Jinlin Li\, Researcher at the Heparan Sulfate Biology group (Jinlin Li’s lab)\, Dept. of Medical Biochemistry and MicrobiologyTitle: Heparanase attenuates ZIKV infection by impeding the stability of viral protein \n\n\n\nSummary: Heparanase (Hpa) is the only endoglycosidase enzyme in mammalian cells capable of cleaving heparan sulfate. In addition to the well-known functions in the regulation of glycosaminoglycans integrity\, accumulating evidence indicate Hpa plays vital roles in virus infection\, while the mechanisms are not yet fully understood\, especially in RNA virus infection. In this study\, we found Zika virus (ZIKV) reduced the expression of Hpa at the late life cycle of viral infection. Overexpression of wild-type Hpa but not the inactive enzymatic mutant (Hpa-DM) in Huh7 cells dramatically decreased the production of infectious virions. These findings were further confirmed by the results from Mouse Embryonic Fibroblasts (MEF) cells that knock-out of Hpa enhanced ZIKV production\, while overexpression of Hpa suppressed the production of virions. Further investigations indicated that overexpression of Hpa in Huh7 cells exhibited no obvious effects on ZIKV’s attachment/entry and replication steps\, but resulted in a significant downregulation of ZIKV envelope protein (E). Hpa was also shown to specifically degrade E protein when performed co-transfection of plasmids encoding Hpa and viral proteins in HEK-293T cells. Altogether\, our study discovered an unrecognized role of Hpa in virus infection and demonstrated that Hpa serves as a restriction factor for ZIKV infection.
URL:https://www.scilifelab.se/event/campus-uppsala-phd-postdoc-seminars/
LOCATION:Online event via Zoom
CATEGORIES:Community
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/05/SciLifeLab-PhDPostdoc-conuncil-poster_landscape_May_10.png
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220510T084500
DTEND;TZID=Europe/Stockholm:20220510T170000
DTSTAMP:20260404T140916
CREATED:20220428T081405Z
LAST-MODIFIED:20220428T092504Z
UID:10000596-1652172300-1652202000@www.scilifelab.se
SUMMARY:Spatial and Single Cell Biology Platform Retreat
DESCRIPTION:Welcome to this meeting for the Spatial and Single Cell Biology Platform. Please note that this is an internal event for staff and members of the SSCB platform management group and invited members of the associated research groups of the SSCB Platform Scientific Directors. \n\n\n\nSign up here if you are an sSCB platform Employee\n\n\n\n\n\n\n\nProgram\n\n\n\n8:45 – 9.00 Coffee and registration \n\n\n\n9.00 – 9.20 Welcome and short introduction of platform (Charlotte/Mats) \n\n\n\nHU/PI presentation (≈10+10 min interactive presentations/discussion) \n\n\n\n9.20 – 9:40 PI/HU presentation 1 – In situ sequencing/Nilsson Lab \n\n\n\n9.40 – 10.00 PI presentation 2 – Spatial Proteomics/Lundberg Lab \n\n\n\n10.00- 10.20 PI presentation 3 – Spatial Transcriptomics/Lundeberg Lab \n\n\n\n10:20 – 10.40 PI presentation 4 – Advanced FISH Technologies/Bienko Lab \n\n\n\n10.40 – 11.40 Round tour of units \n\n\n\n11:40 – 12:30 Lunch and networking in Gamma 2 Lobby \n\n\n\n12.45 – 13.10 PI presentation 5 – Spatial Mass Spectrometry/ Andrén Lab \n\n\n\n13.10 – 13.30 PI presentation 6 – Eukaryotic sc genomics/Sandberg Lab \n\n\n\n13:40 – 15.00 Platform operation discussions/questions in groups of ≈ 5 in small meeting rooms ( \n\n\n\nFrom 13.30 Coffee and fika to bring to the small group discussions \n\n\n\nFocus on topics that involve everyone and not only the HU: \n\n\n\nHow to work closer together?Biggest challenges?Workflow from project start to delivery. How divide tasks within the team?User fee models? How to charge customer?How to prioritize projects?Queue?Unit Cross-over projects?\n\n\n\n15:00 – 16:30 Mingle with drinks and snacks and PI driven Panel discussion (whole group) – (Mats) \n\n\n\nLooking forward to see you all on May 10!
URL:https://www.scilifelab.se/event/sscb-platform-retreat/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Community
ORGANIZER;CN="SSCB Platform":MAILTO:charlotte.stadler@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220509T151500
DTEND;TZID=Europe/Stockholm:20220509T160000
DTSTAMP:20260404T140916
CREATED:20220502T101150Z
LAST-MODIFIED:20220502T101852Z
UID:10000598-1652109300-1652112000@www.scilifelab.se
SUMMARY:The Svedberg seminar: Daniel Fürth
DESCRIPTION:Assistent Professor\, SciLifeLab Fellow at Uppsala University \n\n\n\nHybrid event: Trippelrummet\, Navet\, BMC and Online \n\n\n\n\n\n\n\n\n\nRegister here\n\n\n\nDr. Daniel Fürth completed his Ph.D. in neuroscience at Karolinska Institutet\, working on mesoscale connectomics using modified rabies virus tracing\, then postdoctoral work in RNA biology and method development at Cold Spring Harbor Laboratory\, Cancer Center\, New York. At Cold Spring Harbor he focused on enabling functional RNA genomics in situ at subcellular single-molecule resolution. Dr. Fürth’s expertise as a leader in both wet and dry lab neuroscience is internationally recognized with a Brain & Behavior Research Foundation NARSAD Young Investigator Award and computational funding from the Chan Zuckerberg Initiative. Dr. Fürth’s lab studies how information is stored\, processed and transmitted between cells. The focus is to find hitherto unknown mechanisms that can transfer symbolic information between cells. Identification of such transmission would enable us to read and write those messages.  \n\n\n\nTitle of the seminar: From in situ to in vivo sequencing\n\n\n\nUnbiased investigation of subcellular RNA localization and its control in vivo remains challenging. Current hybridization-based methods cannot differentiate small regulatory variants\, whilein situ sequencing is limited by short reads. We solved these problems using a bidirectional sequencing chemistry to efficiently image transcript-specific barcodes in situ\, which are then extracted and assembled into longer reads using NGS. Specific cis-regulatory elements usually found in mRNA 3′UTRs mediate RNA localization. Reverse transcription was primed towards the 3’UTR/polyA-tail junction in developing Drosophila and we discovered that in situ cDNA synthesis stalls just downstream of RNA-binding protein crosslink sites\, resulting in truncated cDNAs near RNA-binding protein motifs. We utilized these stop signatures to spatially map cis-regulatory motifs in specific alternative polyadenylation (APA) isoforms. A subset of genes displayed expression of two or more APA isoforms with distinct localization in situ\, to which we could identify their putative trans-acting partners. We validated our findings using both iCLIP-seq and targeted clampFISH probes. Our platform\, therefore\, provides a powerful way to discover novel RNA variants and protein interactions and their localization in situ. Lastly\, I’ll present recent developments of a fluorogenic and non-enzymatic sequencing chemistry capable of sequencing single molecules directly in live cells with subcellular precision.
URL:https://www.scilifelab.se/event/the-svedberg-seminar-daniel-furth/
LOCATION:Navet\, SciLifeLab Uppsala\, SciLifeLab Uppsala\, BMC C11\, Husargatan 3\, Uppsala\, 75237\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/04/Picture1-The-Svedberg-edited.png
ORGANIZER;CN="The Svedberg Seminar Series":MAILTO:thesvedberg@scilifelab.uu.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220509T120000
DTEND;TZID=Europe/Stockholm:20220509T170000
DTSTAMP:20260404T140916
CREATED:20220315T080000Z
LAST-MODIFIED:20220509T065057Z
UID:10000552-1652097600-1652115600@www.scilifelab.se
SUMMARY:Open Science Pathways in the Earth\, Space\, and Life Sciences
DESCRIPTION:SciLifeLab Data Centre and the American Geophysical Union (AGU) invite you to a half-day event on May 9th 2022 focusing on Open Science and Reproducibility.  \n\n\n\nTime: 12:00-17:00 Format: Zoom Webinar will be recorded. \n\n\n\nThis event will feature a number of speakers all addressing these themes on Open Science from various perspectives on a national and international level:  \n\n\n\nThe Path to Open\, Reproducible Science – Stories from the Research CommunityHow to Open Science – Practical Use Cases\, Lessons Learned from the Research CommunityOpen Science from a Broader Context – What Open Science Means from the National and International Perspectives\n\n\n\nSpeakerTitleTime in CESTJohan Rung- SciLifeLab-Data CentreIntroduction12:00Shelly Stall- American Geophysical UnionYour Journey Towards Open Science12:10-12:35Q&A12:35-12:40Sara El-Gebali- SciLifeLab-Data CentreThe road beyond open12:40-13:05Q&A13:05-13:10Break13:10-13:25Fredrik Ronquist- Swedish Museum of Natural History\, SciLifeLabFAIR and Open Science in the biodiversity research community13:25-13:50Q&A13:50-13:55David Diez del Molino- Swedish Museum of Natural HistoryGenome Erosion Pipeline13:55-14:20Q&A14:20-14:25Yuhan Douglas Rao- Cooperative Institute for Satellite and Earth System Studies / NC State University“If It Ain’t Broke\, Why Fix it?” – Open Science Lessons Learned in the Field14:25-14:50Q&A14:50-14:55Break14.55-15.10Daniel Bangert- Digital Repository of Ireland\, Royal Irish AcademyIreland’s national agenda for open research15:10-15:35Q&A15:35-15:40Christine Kirkpatrick- SDSC: San Diego SuperComputing CenterAn Open Science Future: National and International Perspectives15:40-16:05Q&A16:05-16:10Chelle Gentemann- NASAOpening up to Open Science16:10-16:35Q&A16:35-16:40Shelley StallClosing Remarks16:40-17:00\n\n\n\nRegister here
URL:https://www.scilifelab.se/event/agu-scilifelab/
LOCATION:Online event via Zoom
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/03/Artboard-1-1.png
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220509T090000
DTEND;TZID=Europe/Stockholm:20220509T110000
DTSTAMP:20260404T140916
CREATED:20220315T124100Z
LAST-MODIFIED:20220715T121447Z
UID:10000554-1652086800-1652094000@www.scilifelab.se
SUMMARY:Open science & Reproducibility Services at SciLifeLab
DESCRIPTION:Time: 09:00-11:00Format: Zoom meeting will be recorded \n\n\n\nSciLifeLab Data Centre invites you to a 2-hour event on May 9th 2022 focusing on services available at SciLifeLab for researchers regarding Open Science and Reproducibility.  \n\n\n\nIn the event we will showcase a variety of tools and services to facilitate open and reproducible practices in data-driven research.  \n\n\n\nSpeakers: \n\n\n\nErik Fasterius\, NBISStephan Nylinder\, NBIS Data Management teamAnna Asklöf\, SciLifeLab Data Centre teamOla Spjuth\, prof.\, SciLifeLab\n\n\n\n\n\n\n\nRegister here\n\n\n\n\n\n\n\nDon’t forget to register to the afternoon event: \n\n\n\nexploring Open Science Pathways in the Earth\, Space\, and Life Sciences
URL:https://www.scilifelab.se/event/open-science-reproducibility-at-scilifelab/
LOCATION:Online event via Zoom
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220506T090000
DTEND;TZID=Europe/Stockholm:20220506T093000
DTSTAMP:20260404T140916
CREATED:20220217T115711Z
LAST-MODIFIED:20220331T141218Z
UID:10000531-1651827600-1651829400@www.scilifelab.se
SUMMARY:[Clinical Talks] iCAN and developing a national precision cancer medicine program
DESCRIPTION:On May 6\, Professor Tomi Mäkelä at the University of Helsinki Faculty of Medicine will talk about his work as executive officer of the iCAN Digital Precision Cancer Medicine flagship. iCAN is one of the Academy of Finland national research and innovation flagships for 2019-2026\, with the goal to develop a nucleus of scientific excellence into competence clusters for discoveries\, innovations\, and societal and economic impact. The founding hosts are the University of Helsinki and HUS Helsinki University Hospital with a goal for national reach within the National Cancer Center FICAN. While executed as a public-private-patient-partnership\, iCAN brings together academic research\, healthcare system\, life science industry partners and patients. The active participation of patients at all levels is a key element of the flagship\, ensuring impact and benefits to the patients. Partnerships with companies from pharma\, biotech\, and AI sectors are critical and enable the inclusion of early drug leads\, new technologies\, and new competencies. Furthermore\, iCAN leverages the unique strengths that Finland has in the areas of top-level cancer research\, health registries\, biobanks\, and digital health to provide solutions for the global cancer challenge. \n\n\n\nRegistration\n\n\n\nTomi Mäkelä\, MD\, PhD\, is a Professor of Biochemistry and Molecular Biology at the University of Helsinki Faculty of Medicine\, and the Executive Officer of the Finish iCAN Digital Precision Cancer Medicine flagship program. He obtained an MD and PhD in Oncology and Cancer Biology during his studies in the late 80\, early 90s at the University of Helsinki. He then pursued his postdoctoral studies at the prestigious Whitehead Institute\, Cambridge Massachusetts 1993-1995\, and in 2002 became a Professor at the University of Helsinki. Since\, then he has held various leadership positions at the University\, including\, Director of the Institute of Biotechnology (2009-2014)\, Director of HiLIFE Helsiniki Institute of Life Science (2015-2019)\, Director of Biomedicum Helsinki (2017-present). Prof. Mäkelä is also the current Executive Manager of The Finnish Cancer Institute (since 2012)\, and a panelist and panel chair of the European Research Council since 2011. \n\n\n\nThe iCAN Digital Precision Cancer Medicine flagship is one of six national flagships in Finland 2019-2026 aiming to develop nuclei of scientific excellence into competence clusters for discoveries\, innovations\, and societal and economic impact. In iCAN a platform joining Precision Cancer Medicine (PCM) with Digital Health is established for discoveries and improved treatments. iCAN is hosted by the University of Helsinki and Helsinki University Hospital HUS and with a goal for national reach within the National Cancer Center FICAN. Leveraging the unique strengths that Finland has in the areas of top-level cancer research\, health registries\, biobanks\, and digital health to provide solutions for the global cancer challenge. iCAN is furthermore organized as a partnership between academic research\, healthcare system\, life science industry partners and patients. It is a public-private-patient-partnership\, forming a competence cluster with significant economic\, educational\, and societal impact. The active participation of patients at all levels is a key element of the flagship\, ensuring impact and benefits to the patients. Partnerships with companies from pharma\, biotech\, and AI sectors are critical and enable the inclusion of early drug leads\, new technologies\, and new competencies. \n\n\n\nThese ambitious goals are accomplished via the unique iCAN digital precision cancer medicine platform\, enabling the integration of cutting-edge molecular profiling information from tumors with rich longitudinal health data available in Finland\, by eg. addressing tumor development in the context of the immune system or development of treatment resistance. The iCAN discovery platform links molecular profiling of tumors with broader health data of cancer patients\, acting as a catalyst for breakthrough research and technologies.The scale of data – 15\,000 samples across different cancer types will be profiled by 2026 – enables real impact and broad studies across different cancer types. The platform will enable an improved understanding of the complex interplay between cancer cells and the host.The pan-cancer research project already has ongoing studies in colorectal\, gastric\, pancreatic\, breast\, lung\, ovarian\, renal\, prostate\, bladder\, melanoma\, and pediatric solid cancers as well as myeloid leukemias\, lymphomas and multiple myeloma. \n\n\n\nRead more\n\n\n\n\n\n\n\n\n“Clinical Talks” has been renewed for yet another exciting\, innovative\, and enlightening season. This season will focus on sustainable innovations within Life Sciences\, that have the potential to contribute to a better climate friendly future for our future generations. Also new this year is that the seminar is co-organized in a collaboration between SciLifeLab and KI Innovations . \n\n\n\nSeason 5\, will be held September 2021 until March 2022 with scheduled Talks\, during Friday mornings 09-09:30 am via ZOOM (with some time-zone friendly adjustments for our international speakers). Each session consists of a talk given by our invited speaker followed by Q&A. The seminar is an open educational seminar series for our ever-expanding Life Science community.
URL:https://www.scilifelab.se/event/clinical-talks-ican-and-developing-a-national-precision-cancer-medicine-program/
LOCATION:Online event via Zoom
CATEGORIES:Event
ORGANIZER;CN="Clinical Talks":MAILTO:precisionmedicine@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220505T150000
DTEND;TZID=Europe/Stockholm:20220505T160000
DTSTAMP:20260404T140916
CREATED:20220428T154038Z
LAST-MODIFIED:20220428T154048Z
UID:10000597-1651762800-1651766400@www.scilifelab.se
SUMMARY:BAM Seminar: From memes to wordplay – How to add humor to your science communication
DESCRIPTION:‘First make people laugh\, and then make them think’. Humor can be a powerful way to attract attention and convey your message. However\, it is also challenging to find the right balance between funny quips and scientific content. In this talk\, Jente Ottenburghs will share some tips and tricks on how he has managed to blend stand-up comedy and science communication. \n\n\n\nJente Ottenburghs\, is a lecturer at University of Wageningen. He worked as a Postdoc at Karolinska Institutet and Uppsala University after he obtained his PhD from University of Wageningen. Throughout his career\, he experimented with different ways of Science communication and also did stand-up comedy.  \n\n\n\nResearchers in all stages of their career\, who want to spice up their talks\, are welcome to attend and could find the talk useful. Branching out in the ways to present one’s research can make talks more interesting and memorable and can help to convey the messages to the audience.  
URL:https://www.scilifelab.se/event/from-memes-to-wordplay-how-to-add-humor-to-your-science-communication/
LOCATION:Online event via Zoom
CATEGORIES:Event
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220505T130000
DTEND;TZID=Europe/Stockholm:20220505T170000
DTSTAMP:20260404T140916
CREATED:20211202T101312Z
LAST-MODIFIED:20220504T152450Z
UID:10000495-1651755600-1651770000@www.scilifelab.se
SUMMARY:γδSTO workshop -  Mini-symposium of Stockholm’s γδ T cell community
DESCRIPTION:A workshop on the May 5\, on gamma delta T cells for our scientific community in Stockholm. Different labs from SciLifeLab\, KI (Solna and Fleminsberg) and Stockholm University are invited. \n\n\n\nregister to attend\n\n\n\nProgram: \n\n\n\nγδSTO-workshop-programDownload
URL:https://www.scilifelab.se/event/%ce%b3%ce%b4sto-workshop/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Community,Event
ORGANIZER;CN="Patrick Sandoz":MAILTO:patrick.sandoz@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220504T120000
DTEND;TZID=Europe/Stockholm:20220504T130000
DTSTAMP:20260404T140916
CREATED:20220503T132158Z
LAST-MODIFIED:20220503T132207Z
UID:10000600-1651665600-1651669200@www.scilifelab.se
SUMMARY:Campus Solna Seminar: Karl Olofson
DESCRIPTION:Welcome to the Campus Solna Seminar Series – an initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between the alpha and gamma buildings. The format will be 2 short 15 min talks (1 speaker from alpha and 1 from gamma)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-12:50 and in Air&Fire\, SciLifeLab Stockholm. \n\n\n\n\n\n\nKarl Olofson\n\n\n\n \n\n\n\nMartin Viklund/Björn Önfelt\, gamma 3 \n\n\n\nUltrasound-based particle manipulation in microcavities.
URL:https://www.scilifelab.se/event/campus-solna-seminar-karl-olofson/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Community
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220503T090000
DTEND;TZID=Europe/Stockholm:20220503T120000
DTSTAMP:20260404T140916
CREATED:20220121T160156Z
LAST-MODIFIED:20220121T160157Z
UID:10000514-1651568400-1651579200@www.scilifelab.se
SUMMARY:BioImage Analysis support - Call4Help
DESCRIPTION:Every 1st week of the month (mainly on Tuesdays\, but there might be exceptions) the BioImage Informatics Facility together with microscopy expert Sylvie Le Guyader (LCI\, Karolinska Institutet) organizes a Call4Help session. The aim is to offer combined expertise towards microscopy and bioimage analysis. All researchers from Swedish institutes can participate. \n\n\n\nThe ideal timepoint to join the Call4Help session is when a researcher has performed pilot experiments and has tried out first analysis approaches – but before having recorded hundreds of images. Combining BIIF’s expertise in BioImage Analysis with microscopy expertise we can discuss ways to record the images that allow analysis afterwards. We will discuss different analysis approaches using mainly open-source software (Fiji\, CellProfiler\, QuPath\, Ilastik\, KNIME)\, but also commercial systems\, if needed (Imaris). \n\n\n\nThe Call4Help session format has been introduced to the BioImage Analysis community by NEUBIAS and ScopeM. \n\n\n\nHow to participate? \n\n\n\nStep1: \n\n\n\nPrepare a short presentation (5-7 min)  – use the following template for your presentation: \n\n\n\nhttp://bit.ly/BIIF_C4H_slideTemplate \n\n\n\nSlide template by NEUBIAS/ScopeM \n\n\n\nStep2: \n\n\n\na) Upload your presentation \n\n\n\nUpload your presentation to a drive of your choice. You can also use our Call4Help google drive. Note that files shared on our Call4Help drive will be available to everyone until the session is over. \n\n\n\nhttp://bit.ly/BIIF_C4H_Drive \n\n\n\nb) Upload example images for testing. \n\n\n\nUpload example images for testing either to the drive of your choice or our Call4Help google drive above. \n\n\n\nhttp://bit.ly/BIIF_C4H_Drive \n\n\n\nc) Register by filling out the registration form: \n\n\n\nhttp://bit.ly/BIIF_C4H_Registration \n\n\n\nStep 3: \n\n\n\nJoin the zoom-session. \n\n\n\nIf your problem is selected for presentation\, you will get a time-slot of 30 – 60 minutes within the session. \n\n\n\nWhat are the Deadlines \n\n\n\nSubmission of a problem and upload of example data: Friday the week before the session. \n\n\n\nNotification about participation: The day before the session. \n\n\n\nNext Call4Help session \n\n\n\nTuesday\, May 3\, 2022\, 9.00-12.00. Deadline for application: Friday\, April 29\, 2022.
URL:https://www.scilifelab.se/event/bioimage-analysis-support-call4help-4/
LOCATION:Online event via Zoom
CATEGORIES:Event
ORGANIZER;CN="Bioimage Informatics Unit":MAILTO:biif@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220502T151500
DTEND;TZID=Europe/Stockholm:20220502T161500
DTSTAMP:20260404T140916
CREATED:20220422T104856Z
LAST-MODIFIED:20220422T111337Z
UID:10000590-1651504500-1651508100@www.scilifelab.se
SUMMARY:The use of systems biology in treatment of liver diseases
DESCRIPTION:Adil Mardinoglu\, Assoc. Prof.KTH SwendenKing s College London\, UK\n\n\n\n \n\n\n\nRegister here to get the zoom link\n\n\n\nAssoc. Prof. Adil Mardinoglu is an expert in the field of Systems Medicine\, Systems Biology\, Computational Biology and Bioinformatics. He lead a team of 25 researchers working in the area of computational biology\, experimental biology and drug development to develop new treatment strategies for Metabolic diseases\, Neurodegenerative diseases and certain type of cancers  \n\n\n\n Abstract: Biological networks can provide a scaffold for studying biological pathways operating in the liver in connection with disease development in a systematic manner. In my presentation\, I will present our recent work where biological networks have been employed to identify the reprogramming in liver physiology in response to NASH/NAFLD. I will further discuss how this mechanistic modelling approach can contribute to the discovery of biomarkers and identification of drug targets which may lead to design of targeted and effective personalized medicine. \n\n\n\nWebpage: https://sysmedicine.com/
URL:https://www.scilifelab.se/event/adil-mardinoglu/
LOCATION:Online event via Zoom
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/02/Picture1-The-Svedberg.png
ORGANIZER;CN="The Svedberg Seminar Series":MAILTO:thesvedberg@scilifelab.uu.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220502T080000
DTEND;TZID=Europe/Stockholm:20220506T170000
DTSTAMP:20260404T140916
CREATED:20220224T100439Z
LAST-MODIFIED:20220224T131919Z
UID:10000535-1651478400-1651856400@www.scilifelab.se
SUMMARY:Spatial analysis of gene expression in tissues
DESCRIPTION:Single-cell genomics technologies have become widely used to study heterogeneous and dynamic biological systems. In order to meet the growing demand for a deeper understanding of tissue profiling\, a number of different spatial transcriptomics approaches have been developed and applied successfully. \n\n\n\nThe goal of this practical course is to provide participants with an overview of the different spatially resolved transcriptome mapping techniques\, learn about the differences and advantages of each technique\, and how to choose and employ the techniques when designing their study. \n\n\n\nThe course includes practical work with hands-on wet-lab work and imaging sessions as well as primary data analysis for three technologies in two practical formats: Visium/Spatial Transcriptomics (ST) as an unbiased method\, and In Situ Sequencing (ISS)/Scrinshot as targeted methods. \n\n\n\nThe lectures will cover the following topics: Visium/ST\, ISS/Scrinshot\, osmFISH\, seqFISH+\, Slide-seqV2\, MERFISH\, CellPhoneDB as well as Human Cell Atlas. \n\n\n\nThe course is aimed at the graduate student and postdoctoral level\, but applications from scientists at all levels are welcome.Registration deadline: 18 March \n\n\n\nRead more and register\n\n\n\n\n\n\n\nCourse Flyer
URL:https://www.scilifelab.se/event/spatial-analysis-of-gene-expression-in-tissues/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Course
ORGANIZER;CN="Joakim Lundeberg":MAILTO:joakim.lundeberg@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220429T140000
DTEND;TZID=Europe/Stockholm:20220429T150000
DTSTAMP:20260404T140916
CREATED:20220315T091430Z
LAST-MODIFIED:20220315T134837Z
UID:10000553-1651240800-1651244400@www.scilifelab.se
SUMMARY:AI-driven genomic precision diagnostics in hematologic malignancies
DESCRIPTION:In this webinar\, jointly organized by the Clinical Genomics platform and Genomic Medicine Sweden\, Dr. Aziz Nazha will present AI-based solutions to improve the diagnosis\, prognosis\, and selection of therapy in hematologic malignancies. The talk will also cover the clinical implication of AI/ML in diagnostic hematology\, current challenges and potential future opportunities. \n\n\n\n\n\n\n\nRegister to receive zoom link\n\n\n\n\n\n\n\nHost: Thoas Fioretos\, Director Clinical Genomics platform \n\n\n\nShort bio:  Aziz Nazha\, MD\, is currently a Global Tech Business Development for Healthcare Solutions at Amazon Web Services. Prior to joining Amazon\, Dr. Nazha was the director of the Cleveland Clinic Center for Clinical Artificial Intelligence and an Associate Medical Director at Enterprise Analytics. He is also an internationally recognized expert in treating patients with leukemia. His research focuses on the use of artificial intelligence\, machine learning\, and deep learning to translate genomic and complex healthcare data into useful clinical tools that can improve patient outcomes.
URL:https://www.scilifelab.se/event/ai-driven-genomic-precision-diagnostics-in-hematologic-malignancies/
LOCATION:Online event via Zoom
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/03/Banner-Clinical-Genomics-GMS.jpg
ORGANIZER;CN="Clinical Genomics Platform":MAILTO:marcela.davila@gu.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220428T170000
DTEND;TZID=Europe/Stockholm:20220428T190000
DTSTAMP:20260404T140916
CREATED:20220420T143019Z
LAST-MODIFIED:20220420T143132Z
UID:10000587-1651165200-1651172400@www.scilifelab.se
SUMMARY:Matchmaking Event – Data Science and Medical/Clinical Research
DESCRIPTION:Welcome to a matchmaking event between researchers within Data Science and Medical/Clinical research at KTH and Region Stockholm. The event is related to the project call: Health\, Medicine and Technology 2023. \n\n\n\nRead more\n\n\n\nRegion Stockholm and KTH opened the yearly call for collaboration in Health\, Medicine and Technology 14 April\, 2022. A key requirement to apply for this call is that one of the partners should be from KTH and one from Region Stockholm. With this event\, we hope to encourage collaborations between experts in data science and clinical research\, at KTH and Region Stockholm. The event is open for all researchers from KTH and from Region Stockholm who are eligible to submit a grant proposal for the Health\, Medicine and Technology Project Call. Postdoctoral researchers who can be co-PI are also encouraged to attend the event. Should you have any questions\, please contact: lifescienceplatform@kth.se ordigitalizationplatform@kth.se \n\n\n\nThe event is organised by the KTH Life Science Platform and KTH Digitalization Platform
URL:https://www.scilifelab.se/event/matchmaking-event-data-science-and-medical-clinical-research/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220428T120000
DTEND;TZID=Europe/Stockholm:20220428T130000
DTSTAMP:20260404T140916
CREATED:20220421T115540Z
LAST-MODIFIED:20220421T115541Z
UID:10000589-1651147200-1651150800@www.scilifelab.se
SUMMARY:Campus Solna Seminars
DESCRIPTION:Welcome to the Campus Solna Seminar Series – an initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between the alpha and gamma buildings. The format will be 2 short 15 min talks (1 speaker from alpha and 1 from gamma)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-12:50 and in Air&Fire\, SciLifeLab Stockholm. \n\n\n\n\n\n\nCasper Winsnes\n\n\n\nEmma Lundberg\,  alpha 2 \n\n\n\nMulti-scale mapping of cell structures using protein images and interactions \n\n\n\n \n\n\n\n \n\n\n\n\n\nSergio Perez Conesa\n\n\n\nLucie Delemotte\, gamma 3 \n\n\n\nK-Ion channel inactivation and lipid dependence through free energy surfaces
URL:https://www.scilifelab.se/event/campus-solna-seminars/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Community
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220428T080000
DTEND;TZID=Europe/Stockholm:20220429T170000
DTSTAMP:20260404T140916
CREATED:20220308T124733Z
LAST-MODIFIED:20220308T142609Z
UID:10000547-1651132800-1651251600@www.scilifelab.se
SUMMARY:Nordic Precision Medicine Forum
DESCRIPTION:Just prior to the pandemic Sweden launched its first ever national Life Science Strategy in eight priority areas covering the strengthening of academic research\, facilitating collaboration between academia and industry\, attracting more industry initiated clinical trials\, and the continuous skills development needed for precision medicine and highly advanced production of pharmaceuticals and medtech devices. Across the Nordic countries precision medicine and technology developments continue at pace\, truly putting them in a favourable position when it comes to taking on the opportunities and challenges of implementing precision medicine\, with its promise to really transform future healthcare as well as the entire life science sector. \n\n\n\nSince 2016 we have convened the regions leading scientists\, healthcare practitioners\, and industry pioneers at our annual meeting. For 2022 you can expect a whole lot more interaction as we finally get back to in-person events. \n\n\n\nRead more\n\n\n\nWe very much hope to see you in Stockholm in April 2022 and hope that you and your loved ones remain safe and healthy throughout these troubling times.
URL:https://www.scilifelab.se/event/nordic-precision-medicine-forum/
LOCATION:Hotel Birger Jarl\, Birger Jarlsgatan 61\, Stockholm\, Sweden
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220427T140000
DTEND;TZID=Europe/Stockholm:20220427T153000
DTSTAMP:20260404T140916
CREATED:20220420T102001Z
LAST-MODIFIED:20220420T102506Z
UID:10000584-1651068000-1651073400@www.scilifelab.se
SUMMARY:Developmental origins of cell heterogeneity in the human lung
DESCRIPTION:HDCA Seminar Series 2022 | Lung \nChristo Samakovlis and Alexandros Sountoulidis \nThe lung contains numerous specialized cell-types with distinct roles in tissue function and integrity. To clarify the origins and mechanisms generating cell heterogeneity\, we created a first comprehensive topographic atlas of early human lung development. We report 83 cell states\, several spatially-resolved developmental trajectories and predict cell interactions within defined tissue niches. We integrated scRNA-Seq and spatial transcriptomics into a web-based\, open platform for interactive exploration. To illustrate the utility of our approach we show distinct states of secretory and neuroendocrine cells\, largely overlapping with the programs activated either during lung fibrosis or small cell lung cancer progression. We define the origin of uncharacterized airway fibroblasts associated with airway smooth muscle in bronchovascular bundles\, and describe a trajectory of Schwann cell progenitors to intrinsic parasympathetic neurons controlling bronchoconstriction. Our atlas provides a rich resource for further research and a reference for defining deviations from homeostatic and repair mechanisms leading to pulmonary diseases. \n  \n– \nHuman developmental cell atlas (HDCA) is the Swedish effort within the human cell atlas (HCA)\, one of the largest international scientific projects. The project aim is to create a comprehensive molecular atlas of human prenatal development at the molecular resolution using state-of-the-art multi-omic technologies such as single-cell RNA-seq\, Spatial Transcriptomics\, in situ sequencing in order to provide deeper insight into how variations and deviations contribute to health and disease. \nThe HDCA Seminar Series 2022 invites you to join us on a journey of early human organogenesis of several organs at the single-cell and spatial resolution. Seminars will be held at SciLifeLab Gamma building on Wednesdays at 14:00 or 15:00 and also via Zoom. After each seminar\, we will have up to 30 min round up discussions with the speaker on how you can contribute to the atlas!  \nWarm Welcome! \n  \n\n\nregistration
URL:https://www.scilifelab.se/event/developmental-origins-of-cell-heterogeneity-in-the-human-lung/
LOCATION:Gamma 2 Lunchroom\, SciLifeLab\, Tomtebodavägen 23\, Solna\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/04/logo_hdca2.png
ORGANIZER;CN="The Human Developmental Cell Atlas":MAILTO:hdca-sweden@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220427T080000
DTEND;TZID=Europe/Stockholm:20220429T170000
DTSTAMP:20260404T140916
CREATED:20220125T121449Z
LAST-MODIFIED:20220128T090507Z
UID:10000517-1651046400-1651251600@www.scilifelab.se
SUMMARY:Workshop on Data Visualization in R - Lund
DESCRIPTION:National course open for PhD students (prioritized)\, postdocs\, researchers and other employees within all Swedish universities interested in learning to plot using different packages in R. \n\n\n\nThe course is organized by NBIS (ELIXIR-SE). \n\n\n\nResponsible teachers: Lokeshwaran Manoharan\, Louella Vasquez\, Markus Ringner \n\n\n\nContact information: edu.plotting.r@nbis.se \n\n\n\n\n\n\n\naPPLY HERE\n\n\n\n\n\n\n\n\n\nCOURSE WEBSITE\n\n\n\n\n\nImportant dates\n\n\n\nApplication open: Jan 31\, 2022 \n\n\n\nApplication deadline: Mar 18\, 2022 \n\n\n\nConfirmation to accepted participants: Mar 25\, 2022 \n\n\n\nCourse fee\n\n\n\nThis training event has no fee. However\, if you accept a position at the workshop and do not participate (no-show) you will be invoiced 2000 SEK. \n\n\n\n*Please note that NBIS cannot invoice individuals \n\n\n\nCourse description\n\n\n\nThis course aims to help researchers to visualize their data in different ways using R. This course will also aim to show researchers how they can make publication grade figures using R. A part of this course is also about making interactive plots that the researchers can view and share in a web-server to make interactive visualizations of the data. \n\n\n\nCourse content\n\n\n\nIn this course you will learn how to visualize your data in R. \n\n\n\nIn particular\, you will learn: \n\n\n\n·          how to format the data necessary for ggplot \n\n\n\n·          how to make bar-charts\, box-plots and others using ggplot \n\n\n\n·          how to make PCA plots in ggplot \n\n\n\n·          how to use R packages for heatmaps \n\n\n\n·          how to plot data on maps using R (optional) \n\n\n\n·          how to plot and handle phylogenetic trees in R (optional) \n\n\n\n·          how to make interactive plots in R using Rshiny \n\n\n\n·          how to host a Rshiny app in one of the available servers \n\n\n\nLearning outcomes\n\n\n\nBy the end of the course the participant will be able to: \n\n\n\n·          handle data in R for visualizations \n\n\n\n·          apply the grammar efficiently in ggplot to get the desired plot \n\n\n\n·          combine different data and/or different plots that are of publication-grade \n\n\n\n·          write your own simple Rshiny app \n\n\n\n·          deploy Rshiny apps in public servers.  \n\n\n\nEntry requirements\n\n\n\nRequired for being able to follow the course and to complete computer exercises: \n\n\n\nfamiliarity with using R and Rstudioa computer with R and Rstudioyou will be asked to install different R packages necessary for the course prior to the course. \n\n\n\nSelection criteria\n\n\n\nThe course can accommodate 25 participants. Selection criteria include correct entry requirements\, motivation to attend the course as well as gender and geographical balance. Academic affiliated registrants are prioritized prior to participants from the industry. \n\n\n\nPlease note that NBIS training events do not provide any formal university credits. The training content is estimated to correspond to a certain number of credits\, however the estimated credits are just guidelines. If formal credits are crucial\, the student needs to confer with the home department before submitting a course application in order to establish whether the course is valid for formal credits or not.
URL:https://www.scilifelab.se/event/workshop-on-data-visualization-in-r-lund/
LOCATION:Retina D227\, Biologihuset\, Sölvegatan 35\, Lund\, 223 62
CATEGORIES:Course
ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220426T120000
DTEND;TZID=Europe/Stockholm:20220426T130000
DTSTAMP:20260404T140916
CREATED:20220411T113030Z
LAST-MODIFIED:20220411T113031Z
UID:10000580-1650974400-1650978000@www.scilifelab.se
SUMMARY:Measuring metabolites\, the building blocks of biology
DESCRIPTION:In the frame of the SciLifeLab Site Umeå / KBC Infrastructure Seminar Series\, the seminars will be organised every second Tuesday during spring 2022 in turn with IceLab Lunch Pitches. The seminars will be held in a hybrid format IRL in Glasburen\, KBC\, and online via Zoom. Take the chance to get information on facilities\, possibilities and services that infrastructure\, both SciLifeLab-associated and local\, can offer! Learn more about the seminar series and Schedule for Spring 2022 here. \n\n\n\nOn April 26th\, 12:00-13:00\, SciLifeLab Site Umeå / KBC Infrastructure Seminar Series presents:  \n\n\n\n“Measuring metabolites\, the building blocks of biology” \n\n\n\nby Annika Johansson\, Head of the Swedish Metabolomics Centre (SMC) facility. \n\n\n\nThe presentation will give an introduction to metabolomics and small molecule analysis by mass spectrometry. We will present our different services and also give examples of different research projects in which SMC has been involved. \n\n\n\nLearn more about the Swedish Metabolomics Centre on its homepage. \n\n\n\nSign up (latest by April 25th\, 10 a.m.) for on-site participation or follow online via Zoom: https://umu.zoom.us/j/63138997026 \n\n\n\nregistration
URL:https://www.scilifelab.se/event/measuring-metabolites-the-building-blocks-of-biology/
LOCATION:Glasburen Seminar Room\, Chemical Biological Centre (KBC) Building\, Umeå University\, Umeå\, 901 87\, Sweden
CATEGORIES:Event
ORGANIZER;CN="SciLifeLab Ume%C3%A5":MAILTO:umea@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220426T093000
DTEND;TZID=Europe/Stockholm:20220426T120000
DTSTAMP:20260404T140916
CREATED:20220411T114853Z
LAST-MODIFIED:20220411T115121Z
UID:10000581-1650965400-1650974400@www.scilifelab.se
SUMMARY:New developments in upstream bioprocessing technologies seminar
DESCRIPTION:Presentation och demonstration av nya single use bioreactors (SUB) för mammalieceller.  \n\n\n\nregister to attend\n\n\n\nProgram:  \n\n\n\n9:30-10:15 Matthijs Neimeijer\, Cultivating red blood cells in singe-use bioreactors \n\n\n\n10:15-10:45 Fika och demonstration \n\n\n\n10:45-11:30 Michel Kensler\, Comparisons in scale up and down scale \n\n\n\n11:30-12:00 Questions
URL:https://www.scilifelab.se/event/new-developments-in-upstream-bioprocessing-technologies-seminar/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220425T090000
DTEND;TZID=Europe/Stockholm:20220429T153000
DTSTAMP:20260404T140916
CREATED:20220131T095506Z
LAST-MODIFIED:20220201T080802Z
UID:10000518-1650877200-1651246200@www.scilifelab.se
SUMMARY:NBIS/ELIXIR-SE Tools for Reproducible Research - ONLINE
DESCRIPTION:NBIS / ELIXIR-SE course is open for PhD students\, postdocs\, group leaders and core facility staff interested in making their computational analysis more reproducible. International applications are welcome\, but we will give approximately half of the participant slots to applicants from Swedish universities at minimum\, due to the national role NBIS plays in Sweden. \n\n\n\nThe course is organized by NBIS (ELIXIR-SE). \n\n\n\nResponsible teachers: John Sundh\, Erik Fasterius \n\n\n\nContact information: edu.trr@nbis.se \n\n\n\n\n\n\n\n\n\nAPPLICATION\n\n\n\n\n\nCOURSE WEBSITE\n\n\n\n\n\nImportant dates\n\n\n\nApplication open: Feb 1\, 2022 \n\n\n\nApplication deadline: Mar 25\, 2022 \n\n\n\nConfirmation to accepted participants: Apr 1\, 2022 \n\n\n\nCourse fee\n\n\n\nThis online training event has no fee. However\, if you accept a position at the workshop and do not participate (no-show) you will be invoiced 2\,000 SEK. \n\n\n\n*Please note that NBIS cannot invoice individuals \n\n\n\nCourse description\n\n\n\nOne of the key principles of proper scientific procedure is the act of repeating an experiment or analysis and being able to reach similar conclusions. Published research based on computational analysis\, e.g. bioinformatics or computational biology\, have often suffered from incomplete method descriptions (e.g. list of used software versions); unavailable raw data; and incomplete\, undocumented and/or unavailable code. This essentially prevents any possibility of attempting to reproduce the results of such studies. The term “reproducible research” has been used to describe the idea that a scientific publication based on computational analysis should be distributed along with all the raw data and metadata used in the study\, all the code and/or computational notebooks needed to produce results from the raw data\, and the computational environment or a complete description thereof. \n\n\n\nReproducible research not only leads to proper scientific conduct but also provides other researchers the access to build upon previous work. Most importantly\, the person setting up a reproducible research project will quickly realize the immediate personal benefits: an organized and structured way of working. The person that most often has to reproduce your own analysis is your future self! \n\n\n\nCourse content\n\n\n\nTopics covered: \n\n\n\nGood practices for data analysisVersion control and collaborative code developmentPackage and environment managementWorkflow managementDocumentation and reportingContainerized computational environments\n\n\n\n\n\n\n\nLearning outcomesBy the end of the course the student will be able to: \n\n\n\nOrganize and structure computational projectsTrack changes and collaborate on code using GitInstall packages and manage software environments using CondaStructure computational steps into workflows with Snakemake and NextflowCreate automated reports and document their analyses with RMarkdown and JupyterPackage and distribute computational environments using Docker and Singularity\n\n\n\nEntry requirements\n\n\n\nRequired for being able to follow the course and to complete computer exercises: \n\n\n\nFamiliarity with using the terminal (e.g. be familiar with commands such as ls\, cd\, touch\, mkdir\, pwd\, wget\, man\, etc.)A computer with a webcamYou will be asked to install the video conferencing software zoom (https://zoom.us/) to be able to participate in the courseSome knowledge in R and/or python is beneficial but not strictly required\n\n\n\nSelection criteria\n\n\n\nThe course can accommodate 20 participants. Selection criteria include correct entry requirements\, motivation to attend the course as well as gender and geographical balance. Academic affiliated registrants are prioritized prior to participants from the industry.  \n\n\n\nPlease note that NBIS training events do not provide any formal university credits. The training content is estimated to correspond to a certain number of credits\, however the estimated credits are just guidelines. If formal credits are crucial\, the student needs to confer with the home department before submitting a course application in order to establish whether the course is valid for formal credits or not.
URL:https://www.scilifelab.se/event/nbis-elixir-se-tools-for-reproducible-research-online/
CATEGORIES:Course
ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220422T090000
DTEND;TZID=Europe/Stockholm:20220422T093000
DTSTAMP:20260404T140916
CREATED:20220330T133354Z
LAST-MODIFIED:20220405T153635Z
UID:10000575-1650618000-1650619800@www.scilifelab.se
SUMMARY:[Clinical Talks] Introduction to AI-driven image analysis in pathology: from preclinical research to clinical diagnostics
DESCRIPTION:Dr. Sami Blom leads Aiforia’s application development team with an ambition to build impactful image analysis solutions to advance histopathology. He has a background in the fields of translational cancer research and pathology and he has extensive expertise in staining and imaging methods for histology specimens. Dr. Blom joined Aiforia in 2016 to develop and advance Aiforia’s applications\, products and services. \n\n\n\nIntroduction to AI-driven image analysis in pathology: from preclinical research to clinical diagnostics \n\n\n\nAiforia equips pathologists and scientists with powerful deep learning artificial intelligence for translating images into discoveries\, decisions\, and diagnoses. The cloud based Aiforia software aims to escalate the efficiency and precision of preclinical and clinical medical image analysis from oncology to neuroscience and more. Deep learning artificial intelligence enables increased speed\, accuracy and consistency in medical image analysis.  \n\n\n\nAiforia was founded in 2013 and our mission is to provide the highest quality solutions for AI-assisted image analysis to enable personalized and democratized care for patients. Year 2021 was historic for the company: Aiforia was listed on Nasdaq Helsinki First North Market Finland in December 2021. In connection with the listing\, the Company raised approximately 29 million euros in gross assets. This\, together with the B-financing round implemented earlier in the same year\, provides a strong foundation for Aiforia’s growth. \n\n\n\nRegister to receive zoom link\n\n\n\n \n\n\n\n\n“Clinical Talks” has been renewed for yet another exciting\, innovative\, and enlightening season. This season will focus on sustainable innovations within Life Sciences\, that have the potential to contribute to a better climate friendly future for our future generations. Also new this year is that the seminar is co-organized in a collaboration between SciLifeLab and KI Innovations . \n\n\n\nSeason 5\, will be held September 2021 until March 2022 with scheduled Talks\, during Friday mornings 09-09:30 am via ZOOM (with some time-zone friendly adjustments for our international speakers). Each session consists of a talk given by our invited speaker followed by Q&A. The seminar is an open educational seminar series for our ever-expanding Life Science community.
URL:https://www.scilifelab.se/event/clinical-talks-introduction-to-ai-driven-image-analysis-in-pathology/
LOCATION:Online event via Zoom
CATEGORIES:Event
ORGANIZER;CN="Clinical Talks":MAILTO:precisionmedicine@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220421T150000
DTEND;TZID=Europe/Stockholm:20220421T160000
DTSTAMP:20260404T140916
CREATED:20220330T110000Z
LAST-MODIFIED:20220421T112532Z
UID:10000573-1650553200-1650556800@www.scilifelab.se
SUMMARY:FAIRPoints-Things you need to know about Data Access Statements
DESCRIPTION:Location: Online via Zoom \n\n\n\n\n\nSee Event in your Time Zone \n\n\n\nSpeaker: Juliane Schneider & Chris Erdmann \n\n\n\nSpeakers Juliane Bio\, Chris Bio \n\n\n\nFAIRPoints is an event series highlighting pragmatic measures developed by the community towards the implementation of the FAIR (Findable\, Accessible\, Interoperable\, Reusable) data principles\, in collaboration with GoFAIR US\, SDSC\, AGU\, and SciLifeLab Data Centre.  \n\n\n\nData access statements (DAS)\, also known as data availability statements\, are key elements that can be used in multiple diverse disciplines and have a huge impact in providing essential information as it outlines where and how any underlying data may be accessed and reused\, listing specific restrictions (if any) and authorization requirements. It is therefore integral to the FAIRification process.  \n\n\n\nJoin us in this talk to discover how an effective data access statement should look like!  \n\n\n\n\n\n\n\nRegister here\n\n\n\nSign up for future events here \n\n\n\nTwitter: @FAIR_Points
URL:https://www.scilifelab.se/event/fairpoints-das/
LOCATION:Online event via Zoom
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220421T140000
DTEND;TZID=Europe/Stockholm:20220421T170000
DTSTAMP:20260404T140916
CREATED:20220328T144508Z
LAST-MODIFIED:20220330T181116Z
UID:10000572-1650549600-1650560400@www.scilifelab.se
SUMMARY:Career in Life Science - MTLS Networking Event
DESCRIPTION:The MTLS Alumni Network is a student-led initiative to connect current students and alumni of the Joint Master’s Programme in Molecular Techniques in Life Science (MTLS). The programme was created through a collaboration between Karolinska Institutet\, Stockholm University\, and KTH Royal Institute of Technology. Launched in 2015\, it has since reached a network of over 150 alumni and 60 current students.   \n\n\n\nAt the ‘Careers in Life Science – MTLS Networking Event’\, you will meet recruiters from biotech and pharma as well as representatives from diverse life science companies. It is a great opportunity for current students and graduates of MTLS to network and to look for employment post-grad\, summer internships\, and even master thesis projects. There will also be speakers from “alternative” life science career paths\, such as science communicators\, facility managers\, and policy makers. Getting to engage with this unique “human library” is sure to inspire you if what you are looking for is an unconventional career path in the life sciences!  \n\n\n\nAgenda \n\n\n\n14:00-17:00 Networking\, mingle with recruiters and representatives\, and “human library” speakers  \n\n\n\n15:00-16:00 Zoom Session with Illumina and Randstad in Water   \n\n\n\nRead more about the program
URL:https://www.scilifelab.se/event/career-in-life-science-mtls-networking-event/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Community
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220421T120000
DTEND;TZID=Europe/Stockholm:20220421T130000
DTSTAMP:20260404T140916
CREATED:20220420T120242Z
LAST-MODIFIED:20220420T120310Z
UID:10000585-1650542400-1650546000@www.scilifelab.se
SUMMARY:Campus Solna Seminars
DESCRIPTION:Welcome to the Campus Solna Seminar Series – an initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between the alpha and gamma buildings. The format will be 2 short 15 min talks (1 speaker from alpha and 1 from gamma)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-12:50 and in Air&Fire\, SciLifeLab Stockholm. \n\n\n\n\n\n\nOlena Berkovka\n\n\n\nJanne Lehtiö\,  alpha 1 \n\n\n\nTo stay or to leave? – (p)ppGpp signaling determines bacterial lifestyle decisions during distinct starvation conditions \n\n\n\n \n\n\n\n \n\n\n\n\n\nRuben Soares\n\n\n\nMats Nilsson\, gamma 4 \n\n\n\nLock on target: padlock probes and rolling circle amplification towards next-gen pathogen diagnostics and genotyping at the point-of-care
URL:https://www.scilifelab.se/event/66941/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Community
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220421T110000
DTEND;TZID=Europe/Stockholm:20220421T120000
DTSTAMP:20260404T140916
CREATED:20220323T161559Z
LAST-MODIFIED:20220323T161633Z
UID:10000567-1650538800-1650542400@www.scilifelab.se
SUMMARY:WGS & WTS – gamechangers in AML and ALL diagnostics
DESCRIPTION:Speaker: Manja Meggendorfer\, Head of Molecular Genetics at MLL Munich Leukemia Laboratory \n\n\n\nThe webinar is jointly organized by the Unit of Clinical Genetics at the Department of Molecular Medicine\, KI\, the Clinical Genomics platform and Genomic Medicine Sweden. \n\n\n\n \n\n\n\nRegister to receive zoom link
URL:https://www.scilifelab.se/event/wgs-wts-gamechangers-in-aml-and-all-diagnostics/
LOCATION:Online event via Zoom
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/03/Seminar_Manja-Meggendorfer.png
ORGANIZER;CN="Clinical Genomics Platform":MAILTO:marcela.davila@gu.se
END:VEVENT
END:VCALENDAR