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BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20241015T100000
DTEND;TZID=Europe/Stockholm:20241015T111500
DTSTAMP:20260403T201205
CREATED:20240902T120825Z
LAST-MODIFIED:20240902T120852Z
UID:10001345-1728986400-1728990900@www.scilifelab.se
SUMMARY:Deriving actionable insight from omics data – an industry perspective
DESCRIPTION:Speaker: Daniel Muthas\, Head of Data Science & Bioinformatics at AstraZeneca \n\n\n\nAbstract \n\n\n\nThis talk will focus on how advancement in omic analysis is enabling the realisation of precision medicine in chronic complex diseases. Large\, well phenotyped cohorts highlights the heterogeneity of disease and through single cell technologies we are able to study disease processes at unprecedented granularity\, but how do we take these insights into actionable and deployable applications? Here I will focus on how we employ a breadth of bioinformatic techniques of different modalities to bridge between populations\, patients\, and cellular level to identify novel targets\, biomarkers and patient populations. \n\n\n\nBackground \n\n\n\nDaniel’s team is working with applied bioinformatics across the whole drug discovery and development pipeline\, from target identification to indication expansion and exploratory biomarker analysis in clinical trials.   \n\n\n\nHost: Rasool Saghaleyni\, NBIS Chalmers University\, Gothenburg (rasool.saghaleyni@scilifelab.se) \n\n\n\nDate: October 15\, 10:00 – 11:15 CET online on zoom \n\n\n\nBroadcast link (live event): link\, pass: spd996 The talk will also be available afterwards on the SciLifeLab YouTube channel.More information about the Oimcs Integration and Systems Biology Workshop here.
URL:https://www.scilifelab.se/event/deriving-actionable-insight-from-omics-data-an-industry-perspective/
LOCATION:Online event via Zoom
CATEGORIES:Event
ORGANIZER;CN="BiG Talks":MAILTO:info@nbis.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20241015T110000
DTEND;TZID=Europe/Stockholm:20241015T120000
DTSTAMP:20260403T201205
CREATED:20240919T090941Z
LAST-MODIFIED:20240926T111646Z
UID:10001359-1728990000-1728993600@www.scilifelab.se
SUMMARY:Trade secrets for Academic Startups\, Pharma and Biotech Companies in the Life Sciences
DESCRIPTION:Welcome to this Drug Discovery Webinar\, organized by OligoNova and SciLifeLab Drug Discovery and Development\, to learn more about how academic and biotech interventions can be protected with the goal to benefit patients. \n\n\n\nThis webinar is an introduction to trade secrets as a form of intellectual property\, with a focus on its potential importance to a life sciences start up.   \n\n\n\nTrade secrets are often an overlooked form of intellectual property\, thought by many to be of little relevance in the life sciences.  However\, as part of a well-developed IP strategy\, trade secrets have an increasingly important role to play\, with the potential to not only supplement a patent-based strategy but\, in some cases\, to provide a more suitable alternative. \n\n\n\nIn this seminar\, we will discuss how trade secrets can be identified\, protected\, and used to increase value and support investment. \n\n\n\nregistration\n\n\n\nAgenda \n\n\n\n\nIntroduction – Fredrik Wångsell\, OligoNova\n\n\n\nTrade secrets in the Life Sciences – Fiona Hey\, Tony Proctor and Michel\, Pears Potter Clarkson\n\n\n\nQ&A and discussion\n\n\n\n\nWelcome \n\n\n\nSciLifeLab DDD and OligoNova \n\n\n\nOther Seminars\n\n\n\nOligaNova organizes three seminars during the fall 2024 \n\n\n\nTrade secrets in the Life Sciences\, October 15 \n\n\n\nMaximizing exclusivity in the Life Sciences\, November 6 \n\n\n\nIP Strategies in the Life Sciences\, December 18
URL:https://www.scilifelab.se/event/trade-secrets-in-the-life-sciences/
LOCATION:Online event via Zoom
CATEGORIES:Event
ORGANIZER;CN="OligoNova - Part of the Drug Discovery and Development Platform":MAILTO:par.matsson@oligonova.org
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20241017T090000
DTEND;TZID=Europe/Stockholm:20241017T170000
DTSTAMP:20260403T201205
CREATED:20240314T102017Z
LAST-MODIFIED:20241011T115004Z
UID:10001207-1729155600-1729184400@www.scilifelab.se
SUMMARY:SciLifeLab Uppsala Site Day
DESCRIPTION:The SciLifeLab site in Uppsala welcomes you to a full day of vibrant and inspiring science. During this event\, SciLifeLab Uppsala will highlight the research and infrastructure located in Uppsala. \n\n\n\nExperience the wide variety of research infrastructures at SciLifeLab Uppsala. Listen to talks from SciLifeLab/DDLS fellows. Join the panel discussion with the nationwide capability programs in Planetary Biology\, Precision Medicine\, and Pandemic Laboratory Preparedness. Enjoy poster sessions and exhibitions from SciLifeLab facilities. \n\n\n\nThe SciLifeLab Uppsala Site Day aims to foster discussions and interaction among participants. The event will be held exclusively on-site in Sal X\, which has a seating capacity of 221 people\, and will be streamed to Sal IX\, which can accommodate 141 people. Since the seats are limited\, remember to cancel if you cannot attend. \n\n\n\nAll attendees are invited to enjoy fika\, lunch\, and mingling sessions. Please note that no Zoom link will be available. \n\n\n\nRegistration\n\n\n\nRegistration closes on October 14 at 09:00. \n\n\n\nRegistration\n\n\n\nIf you have questions\, please contact events@scilifelab.se \n\n\n\n\n\n\n\nProgram\n\n\n\nSciLifeLab Day Uppsala_Program_v4.0Download\n\n\n\n\n\n\n\nExhibition List\n\nU-Print\, 3D printing facility Paul O’Callaghan\n\n\n\nDanioReadout Beata Filipek-Gorniok\n\n\n\nNMR-UppsalaRuisheng Xiong\n\n\n\nMicrofluidicsMaria Tenje\n\n\n\nAffinity Proteomics UppsalaMikael Åberg\n\n\n\nGenomics PlatformSusanne Hellstedt Kerje\n\n\n\nBioImage Informatics Anna KlemmBioinformatics (NBIS/ELEXIR-SE)\,Bengt Persson\n\n\n\nChemical Biology Consortium Sweden Uppsala Jordi Carreras Puigvert\n\n\n\nClinical Genomics UppsalaMalin Melin\n\n\n\nDrug Discovery and Development Platform Rebecka Klintenberg\n\n\n\nSpatial Mass SpectrometryAnna Nilsson\n\n\n\nUppsala International HubCharlotte Walker\n\n\n\nTesta CenterAlexandra Patriksson\n\n\n\nSciLifeLab CapabilitiesPrecision Medicine Capability\, Eva Berglund. Pandemic Laboratory Preparedness Capability\, Alice Sollazzo. Planetary Biology Capability\, Anabella Aguilera\n\n\n\nEATRIS Ulrika BäckmanInnovation coaching Kerstin Ekelöf\, UU Innovation\, Liza Nilsson\, UU Innovation\n\n\n\nUppsala Clinical Research Center (UCR)\, Maria Sörby\n\n\n\nSciLifeLab Data Centre and Data Science Node in Evolution and Biodiversity\, Angela Fuentes Pardo\n\n\n\nSciLifeLab\, Training Hub\, Data-driven Life Science Program (DDLS) supported by KAW and SciLifeLab\, Hampus Pehrsson Ternström\n\n\n\n\n\nPosters and Flash Talks\nWe have reserved space for selected SciLifeLab/DDLS fellow PhD students\, eSSENCE PhD students to bring a scientific poster. Four submitted abstracts have been selected for a 5-minute Flash Talk. The selected Flash Talks are highlighted. \n\n\n\nInstructions \n\n\n\nMount your poster during the Coffee & Registration at 08:30-09:00\, poster presentation during the lunch mingle. \n\n\n\nThe poster screens are portrait oriented\, 103×143 cm. \n\n\n\nPoster #Poster title and presenter1Investigating Islet Vasculature Alterations in Type I DiabetesCasian-Simon Aioanei – FLASH TALK2Optimal effect estimation in genome-wide association studies with censored biomarker measurements in large-scale biobanksYaqi Deng – FLASH TALK3Loss of chromogranin A and catestatin affect islet composition and neurotransmitters in the pancreasDali Epremidze – FLASH TALK4Chemoselective Primer Extension for Sequencing in Fixed and Living CellsChengxiang Yuan5Unraveling the Alzheimer’s Puzzle: The Role of ApoE4\, Mitochondria\, and Lipid Metabolism in neuronal settingSona Hakhverdyan6Adaptive Robust Learning using Latent Bernoulli VariablesAleksandr Karakulev7Deep Learning with Big Data for Genetic EpidemiologyMax Kovalenko8Strained Cyclooctynes with Photocages for Subcellular 3D Photolithographic BarcodingAlfred Larsson9The evolution of gene CNVs in C. rubellaFreja Lindstedt10Variational Approaches for Simulation-Based InferenceMayank Nautiyal11Deep Learning-driven Survival Prediction In Non-small Cell Lung Cancer Using Multiplex Immunofluorescent ImagingLove Nordling12Detection of protein-protein interactions by bio-orthogonal fluorogenic proximity probesAndreas Torell – FLASH TALK13Copy number variations and adaptation along environmental gradients in Picea abies and P. obovataQiujie Zhou\n\n\n\n\n \n\n\n\nOrganizers\n\n\n\n\nEva Tiensuu Janson\, chair SciLifeLab Uppsala committee\, Integration Director\n\n\n\nAristidis Moustakas\, SciLifeLab Uppsala committee\n\n\n\nMikael Widersten\, SciLifeLab Uppsala committee\n\n\n\nJenny Alfredsson\, SciLifeLab Uppsala committee\n\n\n\nAnna Dimberg\, SciLifeLab Uppsala committee\n\n\n\nTitti Ekegren\, project coordinator\, SciLifeLab Uppsala committee
URL:https://www.scilifelab.se/event/scilifelab-day-uppsala/
LOCATION:University Main Building\, Biskopsgatan 3\, Uppsala\, 75310
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2024/02/C13089-scaled.jpg
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20241017T120000
DTEND;TZID=Europe/Stockholm:20241017T130000
DTSTAMP:20260403T201205
CREATED:20240708T140852Z
LAST-MODIFIED:20241007T074153Z
UID:10001299-1729166400-1729170000@www.scilifelab.se
SUMMARY:Campus Solna Seminar Series: Quentin Verron & Annika Bendes
DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 20 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nPhD students that are attending the Campus Solna Seminar lectures will have the opportunity to gain credits. For the syllabus and instructions on how to obtain these credits\, read this document. Please contact your own department at your host University to confirm.See here the full schedule for this semester. \n\n\n\nThis week:\n\n\n\n\n\n\nQuentin Verron\n\n\n\nMagda Bienko – alpha 4 \n\n\n\nExploring the Role of Trans-Interacting Intronic RNAs in Neuronal Genome Organization \n\n\n\n\n\nAnnika Bendes\n\n\n\nJochen Schwenk – alpha 2 \n\n\n\nInsights from highly frequent microsampling of the circulating proteome — A study of virus induced diabetes in mice \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page.
URL:https://www.scilifelab.se/event/campus-solna-seminar-series-quentin-verron-josefin-kenrick/
LOCATION:Milkyway SciLifeLab Solna\, Tomtebodavägen 23\, Solna
CATEGORIES:Community
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/09/IMG_20221103_120135408_HDR-scaled.jpg
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20241017T130000
DTEND;TZID=Europe/Stockholm:20241017T141500
DTSTAMP:20260403T201205
CREATED:20240909T141724Z
LAST-MODIFIED:20240913T114033Z
UID:10001352-1729170000-1729174500@www.scilifelab.se
SUMMARY:Generation of context-specific genome-scale metabolic models using single-cell RNA-Seq data
DESCRIPTION:Johan Gustafsson\, Postdoc researcher\, Broad Institute\, USA \n\n\n\nAbstract \n\n\n\nThe metabolic networks in cells vary across tissues and cell types\, and to accurately model the metabolism of cells\, the full generic metabolic network defined in the genome needs to be reduced to a context-specific network representing the network expressed specifically in the cells of interest. Single-cell RNA-Seq promises to provide the information needed for such a reduction\, but noise in the form of data sparsity is a challenge. Here\, we present methods to handle data sparsity and estimate the uncertainty of modeling results. \n\n\n\nBiography \n\n\n\nJohan is an expert in modeling cancer metabolism and analyzing single-cell RNA/DNA sequencing data\, aiming to uncover vulnerabilities in cancer. With a background in both computer science and biochemistry\, Johan has completed a PhD in metabolic modeling at Chalmers University of Technology and now works as a postdoc in the Getz lab at the Broad Institute\, focusing on CLL/Richter’s syndrome and hypoxia in solid tumors. \n\n\n\nHost: Rasool Saghaleyni\, NBIS Chalmers University\, Gothenburg (rasool.saghaleyni@scilifelab.se) \n\n\n\nDate: October 17\, 13:00 – 14:15 CET online on zoom \n\n\n\nBroadcast link (live event): link\, pass:spd996The talk will also be available afterwards on the SciLifeLab YouTube channel.More information about the Oimcs Integration and Systems Biology Workshop here.
URL:https://www.scilifelab.se/event/oimcs-integration-and-systems-biology/
LOCATION:Online event via Zoom
CATEGORIES:Event
ORGANIZER;CN="BiG Talks":MAILTO:info@nbis.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20241018T100000
DTEND;TZID=Europe/Stockholm:20241018T110000
DTSTAMP:20260403T201205
CREATED:20240815T085623Z
LAST-MODIFIED:20241014T143808Z
UID:10001324-1729245600-1729249200@www.scilifelab.se
SUMMARY:Conformal prediction enables disease course prediction and allows individualized diagnostic uncertainty in multiple sclerosis
DESCRIPTION:Accurate assessment of progression and disease course in multiple sclerosis (MS) is vital for timely and appropriate clinical intervention. The transition from relapsing-remitting MS (RRMS) to secondary progressive MS (SPMS) is gradual and diagnosed retrospectively with a typical delay of three years. To address this diagnostic delay\, we developed a predictive model that is able to distinguish between RRMS and SPMS with high accuracy\, trained on data from electronic health records collected at routine hospital visits obtained from the Swedish MS Registry containing 22\,748 patients with 197\,227 hospital visits. To be useful within a clinical setting\, we applied conformal prediction to deliver valid measures of uncertainty in predictions at the level of the individual patient. We showed that the model was theoretically and empirically valid\, having the highest efficiency at a 92% confidence level\, and demonstrated on an external test set that it enables effective prediction of the clinical course of a patient with individual confidence measures. We applied the model to a set of patients who transitioned from RRMS to SPMS during the cohort timeframe and showed that we can accurately predict when patients transition from RRMS to SPMS. We also identified new patients who\, with high probability\, are in the transition phase from RRMS to SPMS but have not yet received a clinical diagnosis. We conclude that our methodology can assist in monitoring MS disease progression and proactively identify patients undergoing transition to SPMS. An anonymized\, publically accessible version of the model is available at https://msp-tracker.serve.scilifelab.se/. \n\n\n\n \n\n\n\nA preprint is available here: https://www.medrxiv.org/content/10.1101/2024.03.01.24303566v1  \n\n\n\nKim Kultima\, Uppsala University \n\n\n\nNBIS arranges an open AI and IO Seminar Series aimed at knowledge-sharing about Artificial Intelligence and Integrative Omics (AI & IO) analysis and applications in the Life Science community. The seminar series is open to everyone. The seminar is run over Zoom on the third Friday of the month during academic terms\, typically between 10 and 11 am\, with approx. 45 min long presentation and 15 min discussion. 
URL:https://www.scilifelab.se/event/conformal-predictors-for-multiple-sclerosis/
LOCATION:Online event via Zoom
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20241021T090000
DTEND;TZID=Europe/Stockholm:20241023T170000
DTSTAMP:20260403T201205
CREATED:20240327T140400Z
LAST-MODIFIED:20240327T140521Z
UID:10001220-1729501200-1729702800@www.scilifelab.se
SUMMARY:Long-Read Sequencing Uppsala Meeting 2024
DESCRIPTION:In recent years\, long-read DNA sequencing has replaced short-read technologies as the gold standard solution for a wide range of genomics applications. In addition to producing high-quality de novo genome assembly\, long-read technologies can be used to study complex structural variation\, full-length RNA isoforms\, detection of epigenetic signals\, and much more. The adaptation of long-read sequencing is sweeping through several areas of the life sciences\, including agricultural\, environmental\, and medical research. \n\n\n\nJoin us in Uppsala for a three-day international event to catch up with the latest developments in long-read sequencing technologies and their applications\, get inspired by peers presenting their research\, and enjoy discussions with leading experts and company representatives. \n\n\n\n\n\n\n\nRead more\n\n\n\n\n\n\n\nRegistration
URL:https://www.scilifelab.se/event/long-read-sequencing-uppsala-meeting-2024/
LOCATION:Universitetsaulan\, Biskopsgatan 3\, Uppsala\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2024/02/C13089-scaled.jpg
ORGANIZER;CN="National Genomics Infrastructure (NGI)":MAILTO:support@ngisweden.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20241022T090000
DTEND;TZID=Europe/Stockholm:20241024T150000
DTSTAMP:20260403T201205
CREATED:20241004T140950Z
LAST-MODIFIED:20241014T105959Z
UID:10001368-1729587600-1729782000@www.scilifelab.se
SUMMARY:Exhibition in Navet at BMC
DESCRIPTION:On October 22-24\, between 09.00-15.00\, you have a new opportunity to visit our exhibition in Navet at BMC. This is a chance to receive information and updates from 30 of the leading life science companies in Sweden. The entrance to Navet will be open between 09:00-15:00 for external visitors.
URL:https://www.scilifelab.se/event/exhibition-in-navet-at-bmc-4/
LOCATION:Navet\, SciLifeLab Uppsala\, SciLifeLab Uppsala\, BMC C11\, Husargatan 3\, Uppsala\, 75237\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2024/10/exhibition-in-Navet.png
ORGANIZER;CN="SciLifeLab Navet":MAILTO:lokalbokning@scilifelab.uu.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20241022T151500
DTEND;TZID=Europe/Stockholm:20241022T160000
DTSTAMP:20260403T201205
CREATED:20241009T105214Z
LAST-MODIFIED:20241020T201426Z
UID:10001369-1729610100-1729612800@www.scilifelab.se
SUMMARY:Drips and SliPS and Retirees\, Oh My!
DESCRIPTION:Speaker: Jonathan Wilson Yewdell\n\n\n\nChief\, Cellular Biology Section Laboratory of Viral DiseasesNational Institute of Allergy and Infectious Diseases (NIAID)National Institute of Health (NIH)Bethesda\, MD\, USA \n\n\n\nBiography: \n\n\n\nJon Yewdell graduated from Princeton University in 1975 with an AB in biochemistry and received MD and immunology PhD degrees from the University of Pennsylvania in 1981.  After a post-doctoral fellowship at Imperial College in London with David Lane\, he spent 4 years as an Assistant Professor at the Wistar Institute in Philadelphia.  In 1987 he joined NIAID.  His lab uses influenza A\, SARS-CoV2\, vaccinia and other viruses to explore basic elements of cell biology\, virology\, and immunology\, and has contributed to understanding how peptides are generated for CD8+ T cell immunosurveillance. \n\n\n\n\nTitle: Drips and SliPS and Retirees\, Oh My! \n\n\n\n\nAbstract for the talk: \n\n\n\nMHC class I molecules present short peptides derived from biosynthesized proteins\, enabling CD8+ T cell immunosurveillance of tumors\, viruses and intracellular microbes.  Many cellular peptides\, and likely nearly all viral peptides\, derive from rapidly degraded proteins\, which consist of defective ribosomal products (DRiPs) and short-lived proteins (SLiPs).  I will describe the nature of a number of influenza virus DRiPs and how ribosome profiling facilitates the identification of peptides derived from non-canonically translated cellular DRiPs.  I will also discuss how cells with ribosomes lacking individual protein subunits demonstrate either enhanced or decreased peptide generation in a subunit-specific manner and how this can be exploited by cancer cells to escape immunosurveillance.  I will present a model to explain how peptide generation avoids the law of mass action to generate a highly diverse peptide repertoire (immunopeptidome) that enables pathogen and tumor recognition.  This talk will illustrate how\, in over 4 decades of research\, cell biology\, virology\, and immunology can be combined to dissect a medically important immune effector mechanism. \n\n\n\nHost: Adnane Achour\, adnane.achour@scilifelab.se
URL:https://www.scilifelab.se/event/spotlight-seminar-jon-yewdell/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2023/10/Campus-solna-seminar-picture.jpg
ORGANIZER;CN="Spotlight Seminar Series":MAILTO:events@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20241024T100000
DTEND;TZID=Europe/Stockholm:20241024T123000
DTSTAMP:20260403T201205
CREATED:20241002T123645Z
LAST-MODIFIED:20241004T071259Z
UID:10001367-1729764000-1729773000@www.scilifelab.se
SUMMARY:Discover services for data-driven life science
DESCRIPTION:Welcome to join SciLifeLab Data Centre and SciLifeLab Data Management for “Discover services for data-driven life science“-  an overview of data-driven services\, tools\, and support aimed at the fellows community. The event will also include a feedback session to help SciLifeLab Data Centre best support your specific research needs. Share your views about your current and future research needs\, e.g. state-of-the-art services that would further your research or the general research of your field\, currently not available on the SciLifeLab Data Platform. \n\n\n\nWhen: Oct 24\, 10-12.30 CET (Zoom)Target group: Scilifelab Fellows\, DDLS Fellows\, and interested participants \n\n\n\n \n\n\n\nAgenda \n\n\n\n10.00-10.10   Welcome   Johan Rung\, Head of SciLifeLab Data Centre \n\n\n\n10.10-10.35   Open Science 101 Chris Erdmann\, Head of Open Science \n\n\n\n10.35-11.00   SciLifeLab Data Management services and support Angela Fuertes-Pardo\, Data Steward\, SciLifeLab Data Centre \n\n\n\n11.00-11.05  Coffee break \n\n\n\n11.05-11.30   How to get access to Compute\, Storage\, and Hosting to support your research\, speaker TBA \n\n\n\n11.30-12.30   Feedback session: Share your needs for data-driven life science services and tools. Moderators: Johan Rung\, Head of SciLifeLab Data Centre\, and Niclas Jareborg\, NBIS \n\n\n\n \n\n\n\nFor additional information please contact SciLifeLab Data Centre at datacentre@scilifelab.se
URL:https://www.scilifelab.se/event/discover-services-for-data-driven-life-science-2/
CATEGORIES:Event
LOCATION:https://uu-se.zoom.us/j/63809262140
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20241024T100000
DTEND;TZID=Europe/Stockholm:20241024T130000
DTSTAMP:20260403T201205
CREATED:20240917T130711Z
LAST-MODIFIED:20250107T132341Z
UID:10001353-1729764000-1729774800@www.scilifelab.se
SUMMARY:Lund: Building and sharing machine learning demo applications within life sciences
DESCRIPTION:This event is open to everyone at Lund University. It consists of a workshop followed by a free lunch for participants. During the lunch the participants will have an opportunity to informally chat with AI data engineers from the SciLifeLab Data Centre to discuss the needs for services and research infrastructure in life science research using machine learning methods. \n\n\n\nTitle: Building and sharing machine learning demo applications within life sciences: a practical tutorial. \n\n\n\nOrganizer: AI Data Engineers from the SciLifeLab Serve team. \n\n\n\nWhere and when: October 24\, 2024 at 10:00-13:00 at room Rådslaget\, BMC Hus E (Sölvegatan 19\, 223 62 Lund) \n\n\n\nAgenda:10:00-12:00: Workshop12:00-13:00: Lunch \n\n\n\nAbstract: It is becoming increasingly popular to share machine learning models with the community as web applications with an easy-to-use interface. Users can then adjust parameters or submit their own input and see the predictions generated by the underlying model. This tutorial is aimed at researchers working within life sciences who work with machine learning models but do not have the skills to build applications for web. During the tutorial we will start from a trained model and demonstrate step by step how you can create a graphical user interface for your application\, prepare it for deployment\, and make it available on the web with a URL. We will demonstrate the use of specific tools which make this process easy and doable in under an hour. \n\n\n\nThe workshop will last for 2 hours with a break in the middle. We have room to accept 35 participants\, on the first come first served basis. Those registered after that will be placed on the waiting list. \n\n\n\nAfter the workshop all participants are invited for lunch. \n\n\n\nSince there is a limited number of spots in this workshop please sign up only if you intend to attend. \n\n\n\nRegister to join the event\n\n\n\nMore about the event series: \n\n\n\nTools for AI/ML research in life sciences is an event series by the SciLifeLab Data Centre aimed at life science researchers who use machine learning methods in their work. The goal of the events in this series is to provide introductions to different tools for ML research but also to foster discussions around our practices and how they can be improved. The events takes place virtually (over Zoom) and are open to researchers in Sweden and beyond. Each event is scheduled for 60 minutes\, consisting of a talk and an extended discussion. Follow the page of the event series to learn about future seminars. \n\n\n\nFor questions about the events please contact the organizing team by emailing  serve@scilifelab.se  \n\n\n\n \n\n\n\nScientific lead: Prof. Ola Spjuth\, SciLifeLab Data Centre and Uppsala University \n\n\n\nContact information: serve@scilifelab.se
URL:https://www.scilifelab.se/event/ml-demo-applications-lund/
LOCATION:BMC Hus E\, room Rådslaget\, Sölvegatan 19\, Lund\, 223 62\, Sweden
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20241024T120000
DTEND;TZID=Europe/Stockholm:20241024T130000
DTSTAMP:20260403T201205
CREATED:20240708T141035Z
LAST-MODIFIED:20241014T123342Z
UID:10001300-1729771200-1729774800@www.scilifelab.se
SUMMARY:Campus Solna Seminar Series: Alberto Arenas Molina & Kiana Hosseinpour Moghaddam
DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 20 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nPhD students that are attending the Campus Solna Seminar lectures will have the opportunity to gain credits. For the syllabus and instructions on how to obtain these credits\, read this document. Please contact your own department at your host University to confirm.See here the full schedule for this semester. \n\n\n\nThis week:\n\n\n\n\n\n\nAlberto Arenas Molina\n\n\n\nSimon Elsässer – alpha 4 \n\n\n\nTranslating the untranslated: Microproteins encoded by “non-coding” regions and their role in tumorigenesis \n\n\n\n\n\nKiana Hosseinpour Moghaddam\n\n\n\nOla Larsson – gamma 5 \n\n\n\nDi-codon organization orchestrates the malignant proteome \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page.
URL:https://www.scilifelab.se/event/campus-solna-seminar-series-sammy-se-whee-park-kiana-hosseinpour-moghaddam/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Community
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/09/IMG_20221103_123412496_HDR2-scaled.jpg
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20241028T083000
DTEND;TZID=Europe/Stockholm:20241029T130000
DTSTAMP:20260403T201205
CREATED:20240919T141910Z
LAST-MODIFIED:20240927T150822Z
UID:10001363-1730104200-1730206800@www.scilifelab.se
SUMMARY:Precision Omics Initiative Sweden (PROMISE) Symposium
DESCRIPTION:Sweden is uniquely positioned to advance medical research and implement precision medicine on a national scale\, benefiting its entire population. Integration of cutting-edge biomedical research technologies with Sweden’s uniform healthcare system has the potential to position our country as a global frontrunner\, leading the development of precision medicine in this new technological era. However\, data fragmentation and data isolation currently hinder the Swedish ability to fully capitalize on its potential and maximize the use of already available infrastructure and prior investments.  \n\n\n\nPrecision Omics Initiative Sweden (PROMISE)  is a new transformative initiative that will be centered around SciLifeLab and Genomic Medicine Sweden (GMS) to completely integrate medical research with the healthcare system in Sweden. \n\n\n\nPROMISE will have three major focus areas: 1) Generate extensive multi-omics data from both patients and the general population in Sweden\, 2) Develop a strong and effective infrastructure to integrate healthcare generated multi-omics data for research applications\, improve data sharing and data accessibility across Sweden\, 3) Develop legal and regulatory frameworks for better alignment with modern capabilities\, for maximum utilization of Sweden’s great potential. \n\n\n\nRegister for the PROMISE symposium\, October 28-29 2024\, to contribute to further developing the scientific foundation and design of this transformative initiative.  \n\n\n\nregistration\n\n\n\nProgram\n\n\n\nPROMISE Symposium Uppsala October 28-29_FINALDownload\n\n\n\nOrganizing committee  \n\n\n\n \n\n\n\n\nAnna Clareborn\n\n\n\nSanna Gudmundsson\n\n\n\nBo Jacobsson\n\n\n\nÅsa Johansson\n\n\n\nAnders Kämpe\n\n\n\nTuuli Lappalainen\n\n\n\nKerstin Lindblad-Toh\n\n\n\nAnna Lindstrand\n\n\n\nBengt Persson\n\n\n\nRichard Rosenquist Brandell\n\n\n\nTobias Sjöblom\n\n\n\nColum Walsh
URL:https://www.scilifelab.se/event/precision-omics-initiative-sweden-promise-symposium/
LOCATION:Lecture Hall X\, Uppsala University Main Building\, Biskopsgatan 3\, Uppsala\, Sweden
CATEGORIES:Event
ORGANIZER;CN="PROMISE":MAILTO:anna.clareborn@uu.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20241028T090000
DTEND;TZID=Europe/Stockholm:20241101T170000
DTSTAMP:20260403T201205
CREATED:20240808T121308Z
LAST-MODIFIED:20240809T075123Z
UID:10001316-1730106000-1730480400@www.scilifelab.se
SUMMARY:R Programming Foundations for Data Analysis
DESCRIPTION:The course is addressed to individuals with little or no experience in programming but who are enthusiastic about learning how to use R for data analysis and streamline their work. It is a national course open for PhD students\, postdocs\, researchers and other employees in all Swedish. We also welcome applications from outside of Sweden (EU-zone) and from the non-academic sector\, for more info contact us. NOTE: In October 2024\, the course will be a 5-day-course on-site both in Uppsala and Lund. \n\n\n\n\n\n\n\nVenue – onsite\n\n\n\n\nUppsala University: Experimental room\, Campus Blåsenhus\, von Kraemers allé 1A\, 2nd floor\n\n\n\nLund University: Retina D227\, Biologihuset\n\n\n\n\n\n\n\n\nImportant dates\n\n\n\n\nApplication open: August 08\, 2024\n\n\n\nApplication deadline: September 30\, 2024\n\n\n\nConfirmation to accepted students: October 4\, 2024\n\n\n\n\nResponsible teachers: Nima Rafati\, Guilherme Dias\, Miguel Angel Redondo\, Marcin Kierczak\, Lokeshwaran Manoharan\, Louella Vasquez \n\n\n\nContact for questions: edu.r@nbis.se \n\n\n\n\n\n\n\nCourse fee\n\n\n\nA course fee* of 3000 SEK for non-profit organizations or 15000 SEK for private companies will be invoiced to accepted participants. This includes lunches\, coffee\, snacks\, and one course dinner. \n\n\n\n*Please note that NBIS cannot invoice individuals \n\n\n\n\n\n\n\n\n\nApplication\n\n\n\n\n\nCourse website\n\n\n\n\n\n\n\n\n\nCourse content\n\n\n\nThe course covers fundamental concepts of programming and software design focusing on programming in R. We will go through various aspects of R scripting. After introductory lectures on good programming practices\, basic software design theory and a brief overview of R\, we will delve into programming. We start by learning how to use R as a basic calculator\, what are variable types\, how to use data structures\, how to implement repeating actions with and without loops\, and how to take actions based on certain conditions. We gradually proceed to loading data\, importing data from common file formats\, some basic matrix algebra and learning how to perform basic statistical tests and visualize results. You will learn how to document your work and how to generate automatic reports using real-life datasets. During the course you will also be working on a small dataset to apply knowledge you learnt in the course and will present that in a report format towards the end of the workshop. \n\n\n\nTopics covered will include: \n\n\n\n\nVariables and Operators\n\n\n\nMatrices\, lists\, and dataframes\n\n\n\nData manipulation\n\n\n\nVisualization\n\n\n\nR packages\n\n\n\nBioconductor\n\n\n\n\nUpon completion of this course\, you will be able to: \n\n\n\n\nDescribe different data structures commonly used in R.\n\n\n\nWork with different data types.\n\n\n\nImport and export data from and to R environment. \n\n\n\nManipulate data.\n\n\n\nWork with dataframes and lists.\n\n\n\nVisualize the data.\n\n\n\nUse R Markdown to create reports containing text\, code\, tables and/or figures.\n\n\n\n\n\n\n\n\nEntry requirements\n\n\n\nGood general computer literacy is expected\, but no previous experience in programming or R is required. You are expected to know basic concepts in mathematics and statistics\, but the emphasis of the course is to learn how to use R. \n\n\n\nParticipants are expected to use their own computers with pre-installed R and R Studio (detailed instructions will be given upon acceptance). \n\n\n\nDue to our best practice to have a high teacher to student ratio\, there are a maximum number of allowed participants. If we receive more applications\, participants will be selected based on several criteria. Selection criteria include correct entry requirements\, motivation to attend the course as well as gender and geographical balance.
URL:https://www.scilifelab.se/event/r-programming-foundations-for-data-analysis/
LOCATION:Uppsala University\, Lund University
CATEGORIES:Course
ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20241029T130000
DTEND;TZID=Europe/Stockholm:20241029T170000
DTSTAMP:20260403T201205
CREATED:20240821T144101Z
LAST-MODIFIED:20241029T120918Z
UID:10001334-1730206800-1730221200@www.scilifelab.se
SUMMARY:I Forskningens Framkant – Fortbildning för Gymnasielärare
DESCRIPTION:Eventet är inställt \n\n\n\n \n\n\n\nMicrobes are a girl’s best friend: en introduktion till människans mikrobiota och hur den kan påverka vår reproduktiv hälsa\n\nLuisa Hughert \n\n\nAlla ytor i och på människokroppen är täckta i mikrober. Deras gemensamma arvsmassa är mer än hundra gånger större än människans och de har därför tillgång till betydligt flera metabola vägar. I den här föreläsningen undersöker vi hur våra könshormoner samspelar med våra mikrober\, och vilket nytta eller skada de kan göra. \n\n\n\n\n\nFramtidens målsökande läkemedel\n\n \n\n\nStefan Ståhl \n\n\nIntensiv forskning pågår för att utveckla läkemedel som kan målsöka sjuk vävnad\, t.ex. cancertumörer. Detta möjliggör att man kan koppla “tumördödande” substanser till målsökaren\, för att minska risk för biverkningar. Utmaningen är dock att måltavlan\, den s.k. biomarkören\, för målsökaren inte bara finns på tumören\, utan även i frisk vävnad. Därför eftersträvar man idag att utveckla målsökare som aktiverar sin “tumördödande” substans enbart i närhet av cancertumören. \n\n\n\n\n\nEn nål i en höstack- att kartlägga immunceller i tumörer\n\nCamilla Engblom \n\n\n\n\n\nGenteknisk modifiering av alger och växter för att förbättra fotosyntes\n\nPaul Hudson \n\n\n\n\n\nPlats: SciLifeLab\, Tomtebodavägen 23\, SolnaKarta: Google Maps \n\n\n\nVälkommen med din anmälan! \n\n\n\nAnmälan\n\n\n\nOrganiseras av SciLifeLab tillsammans med Vetenskapens Hus.
URL:https://www.scilifelab.se/event/i-forskningens-framkant-fortbildning-for-gymnasielarare-2/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20241031T120000
DTEND;TZID=Europe/Stockholm:20241031T130000
DTSTAMP:20260403T201205
CREATED:20240708T141527Z
LAST-MODIFIED:20241014T123429Z
UID:10001301-1730376000-1730379600@www.scilifelab.se
SUMMARY:Campus Solna Seminar Series: Josefin Kenrick & Carlos Santolaria
DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 20 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nPhD students that are attending the Campus Solna Seminar lectures will have the opportunity to gain credits. For the syllabus and instructions on how to obtain these credits\, read this document. Please contact your own department at your host University to confirm.See here the full schedule for this semester. \n\n\n\nThis week:\n\n\n\n\n\n\nJosefin Kenrick\n\n\n\nFredrik Edfors – gamma 6 \n\n\n\nProfiling the Blood Proteome in Autoimmune Disease Using Proximity Extension Assay \n\n\n\n\n\nCarlos Santolaria\n\n\n\nVicent Pelechano – gamma 5 \n\n\n\nMapping the Allosteric Regulation sites in Metabolism and Gene Expression \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page.
URL:https://www.scilifelab.se/event/campus-solna-seminar-series-annika-bendes-carlos-santolaria/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Community
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/12/IMG_4110-scaled.jpg
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20241104T080000
DTEND;TZID=Europe/Stockholm:20241105T170000
DTSTAMP:20260403T201205
CREATED:20240815T133828Z
LAST-MODIFIED:20240816T113332Z
UID:10001325-1730707200-1730826000@www.scilifelab.se
SUMMARY:The Swedish Bioinformatics Workshop 2024
DESCRIPTION:We are thrilled to invite you to the 22nd Swedish Bioinformatics Workshop (SBW)\, which will take place in Uppsala on November 4th-5th. SBW is an annual event organized by various universities throughout Sweden since 2000. This year\, we are happy to announce that the event will be hosted in the Aula at the Swedish University of Agricultural Sciences. \n\n\n\nJoin us for an exciting lineup of lectures from invited speakers\, participant presentations\, poster sessions\, and workshops designed to enhance your bioinformatics skills. SBW also offers an excellent opportunity to network and discuss the latest developments in the field with fellow researchers in bioinformatics or computational biology. \n\n\n\nSBW 2024 is a hybrid event offering free on-site participation for PhD students and postdocs\, as well as free virtual attendance for all participants. As part of the Nordic Computational Biology Week\, SBW is open to participants across the Nordic countries. \n\n\n\nIf you have any questions\, please contact info@sbw2024.org \n\n\n\n\n\n\n\n\n\nRegistration\n\n\n\n\n\nEvent Website\n\n\n\nProgram
URL:https://www.scilifelab.se/event/the-swedish-bioinformatics-workshop-2024/
LOCATION:Swedish University of Agricultural Sciences\, Auditorium\, Undervisningshuset\, Almas Allé 10\,\, Uppsala\, 756 51\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2024/08/SBW.png
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20241104T150000
DTEND;TZID=Europe/Stockholm:20241104T160000
DTSTAMP:20260403T201205
CREATED:20241031T070624Z
LAST-MODIFIED:20241031T070702Z
UID:10001392-1730732400-1730736000@www.scilifelab.se
SUMMARY:Design Principles of Living Membranes
DESCRIPTION:Ilya Levental\, PhD\nProfessor of Molecular Physiology and Biological PhysicsUniversity of Virginia School of Medicine\, Charlottesville\, VA\, USACampus Solna ɣ2 Lunchroom\n\n\n\n\n\n 
URL:https://www.scilifelab.se/event/design-principles-of-living-membranes/
LOCATION:Gamma 2 Lunchroom\, SciLifeLab\, Tomtebodavägen 23\, Solna\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2024/10/Flier_241104_Levental_LS.1.png
ORGANIZER;CN="Molecular Biophysics Stockholm":MAILTO:join-mbp@scilifelab.se.
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20241104T151500
DTEND;TZID=Europe/Stockholm:20241104T161500
DTSTAMP:20260403T201205
CREATED:20241014T091353Z
LAST-MODIFIED:20241021T113631Z
UID:10001373-1730733300-1730736900@www.scilifelab.se
SUMMARY:[The Svedberg seminar] - Talking to cells: biomolecular ultrasound to image and control cells deep inside the body
DESCRIPTION:Mikhail G. ShapiroProfessorCalifornia Institute of Technology\, USA \n\n\n\n \n\n\n\n \n\n\n\n\n\n\n\nBio\n\n\n\n\n\n\n\nMikhail Shapiro is the Max Delbrück Professor of Chemical Engineering and Medical Engineering\, an HHMI Investigator\, and Director of the Center for Molecular and Cellular Medicine at Caltech. The Shapiro laboratory develops biomolecular technologies allowing cells to be imaged and controlled inside the body using noninvasive methods such as ultrasound. Mikhail received his PhD in Biological Engineering from MIT and his BSc in Neuroscience from Brown. He conducted post-doctoral research at the University of Chicago and UC Berkeley. During the 2024-5 academic year\, Mikhail is conducting research at the Physics for Medicine Institute in Paris and ESPCI as a Fulbright-Tocqueville Distinguished Chair. \n\n\n\nMikhail’s awards include the NIH Pioneer Award\, the Vilcek Prize for Creative Promise\, the Camille Dreyfus Teacher-Scholar Award and the Carl Hellmuth Hertz Ultrasonics Award. Mikhail is an inducted Fellow of the World Molecular Imaging Society. Alongside academic research\, Mikhail has been involved as a founder and adviser to several biotechnology and medical device startups.   \n\n\n\nTalking to cells: biomolecular ultrasound to image and control cells deep inside the body\n\n\n\nStudying biological function in intact organisms and developing targeted cellular therapies requires methods to image and control the function of specific cells deep inside the body. Fluorescent proteins and optogenetics serve this purpose in small\, translucent specimens\, but are limited by the poor penetration of light into deeper tissues. In contrast\, most non-invasive techniques such as ultrasound and magnetic resonance – while based on energy forms that penetrate tissue – are not effectively coupled to cellular function. In this talk\, I will describe our work to bridge this gap by developing biomolecular reporters and actuators for ultrasound based on gas vesicles – a unique class of air-filled protein nanostructures derived from buoyant photosynthetic microbes. By scattering sound waves\, gas vesicles enable noninvasive imaging of tumors\, immune cells\, gut microbes and cell-based diagnostics and therapies. In addition\, they serve as receivers of acoustic radiation force or seeds of localized bubble cavitation\, enabling acoustic remote control. \n\n\n\nMore information about the Shapiro Lab can be found online at shapirolab.caltech.edu. \n\n\n\n \n\n\n\n \n\n\n\n\n\n\n\nHost: Maria Tenje\, UU maria.tenje@angstrom.uu.se
URL:https://www.scilifelab.se/event/the-svedberg-seminar-mikhail-shapiro/
LOCATION:BMC Room C8:301\, Husargatan 3\, Uppsala\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/02/Picture1-The-Svedberg.png
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20241105T100000
DTEND;TZID=Europe/Stockholm:20241105T110000
DTSTAMP:20260403T201205
CREATED:20240923T091902Z
LAST-MODIFIED:20251204T143808Z
UID:10001365-1730800800-1730804400@www.scilifelab.se
SUMMARY:Make your data count: Process\, publish and reuse your metabarcoding output in SBDI
DESCRIPTION:Join this seminar by the Swedish Biodiversity Data Infrastructure (SBDI) to discover tools for converting amplicon sequence reads into species occurrence data that contribute to global biodiversity knowledge. We will introduce SBDI and GBIF platforms\, and demonstrate SBDI resources for metabarcoding data\, including a guide for ENA submission\, a pipeline for denoising reads into Amplicon Sequence Variants (ASVs)\, a web interface for submitting and accessing ASV data in SBDI\, and an R package for processing downloaded data into ASV table format. \n\n\n\nWhen: Tuesday November 5\, 10-11 CET (Zoom) \n\n\n\nSpeakers:  Anders Andersson\, SciLifeLab\, KTH Royal Institute of TechnologyMaria Prager\, SciLifeLab\, Stockholm University / Karolinska InstitutetJeanette Tångrot\, NBIS\, SciLifeLab\, Umeå University \n\n\n\n \n\n\n\nSciLifeLab Data Management seminar series is an event series by the SciLifeLab Data Centre and NBIS joint Data Management team aimed at both the life science research community and infrastructure\, and others with an interest in research data management in life sciences. The events will showcase how to put the FAIR principles\, and good data management into practice. The goal of the events in this seminar series is to provide interesting seminars around topics related to research data management in general but also to foster discussions around best practices and how they can be improved. The events takes place virtually (over Zoom) and are open to everyone\, (researchers\, staff\, RDM professionals etc.) working at or affiliated with a Swedish research institute or university. Each event is scheduled for 60 minutes\, including 15 minutes for discussions and Q & A. The videos will be published openly after the seminars at the SciLifeLab YouTube channel.More information about SciLifeLab Data Centre and NBIS joint Data Management team: https://data-guidelines.scilifelab.se/ \n\n\n\nWelcome!Organisers: SciLifeLab Data Centre and NBIS National Bioinformatics Infrastructure SwedenFor more information or inquiries please contact: data-management@scilifelab.se
URL:https://www.scilifelab.se/event/make-your-data-count-process-publish-and-reuse-your-metabarcoding-output-in-sbdi/
LOCATION:Online event via Zoom
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2024/02/DC_seminar-series_background1-1.png
ORGANIZER;CN="Open Science Seminar Series":MAILTO:data-management@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20241105T103000
DTEND;TZID=Europe/Stockholm:20241105T170000
DTSTAMP:20260403T201205
CREATED:20240426T130948Z
LAST-MODIFIED:20241024T073225Z
UID:10001244-1730802600-1730826000@www.scilifelab.se
SUMMARY:Postponed! New hybrid approaches to Precision Medicine: machine learning\, generative AI\, and digital twins
DESCRIPTION:Workshop postponed to the spring – date to be decided!\n\n\n\n \n\n\n\nIf you have questions or suggestions regarding symposia program\, please feel free to contact the chair of the program committee at gunnar.cedersund@liu.se. \n\n\n\nWe look forward to welcoming you to Linköping in the spring 2025! \n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nMembers of The Data-driven Precision Medicine & Diagnostics expert group:Gunnar Cedersund\, Linköping UniversitySven Nelander\, Uppsala UniversityLars Klareskog\, Karolinska InstitutetJohan Trygg\, Umeå UniversityPatrik Georgii-Hemming\, Karolinska InstitutetPäivi Östling\, KI (adj. SciLifeLab Precision Medicine Capability lead)Francis Lee (adj. WASP-HS representative in DDLS)David Gisselsson Nord (adjunct as GMS representant)Janne Lehtiö\, chair (DDLS SG member)
URL:https://www.scilifelab.se/event/new-hybrid-approaches-to-precision-medicine-machine-learning-generative-ai-and-digital-twins/
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2024/04/PMD_web.png
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20241106T110000
DTEND;TZID=Europe/Stockholm:20241106T120000
DTSTAMP:20260403T201205
CREATED:20240919T091445Z
LAST-MODIFIED:20240926T111706Z
UID:10001360-1730890800-1730894400@www.scilifelab.se
SUMMARY:Maximising exclusivity for Academic Startups\, Pharma and Biotech Companies in the Life Sciences
DESCRIPTION:Welcome to this Drug Discovery Webinar\, organized by OligoNova and SciLifeLab Drug Discovery and Development\, to learn more about how academic and biotech interventions can be protected with the goal to benefit patients. \n\n\n\nJoin us for an insightful seminar focusing on strategies to maximize the exclusivity of medicinal products in the marketplace.  This session will delve into the intricacies of regulatory intellectual property (IP)\, including patenting strategies\, patent term extensions such as Supplementary Protection Certificates (SPCs)\, and regulatory exclusivities like data and market exclusivity. Additionally\, we will explore further exclusivities available for orphan and paediatric medicines. \n\n\n\nThe seminar will emphasise the critical role of exclusivity in attracting and securing investor interest. Gain valuable knowledge on how to navigate and leverage these mechanisms to extend the market life of your medicinal products effectively\, thereby enhancing their appeal to potential investors. \n\n\n\nregistration\n\n\n\nAgenda \n\n\n\n\nIntroduction – Fredrik Wångsell\, OligoNova\n\n\n\nMaximizing exclusivity in the Life Sciences – Fiona Hey\, Tony Proctor and Michel Pears\, Potter Clarkson\n\n\n\nQ&A and discussion\n\n\n\n\nOne follow-up webinar will take place later this year <ADD LINK> \n\n\n\nWelcome \n\n\n\nSciLifeLab DDD and OligoNova \n\n\n\nOther Seminars\n\n\n\nOligaNova organizes three seminars during the fall 2024 \n\n\n\nTrade secrets in the Life Sciences\, October 15 \n\n\n\nMaximizing exclusivity in the Life Sciences\, November 6 \n\n\n\nIP Strategies in the Life Sciences\, December 18
URL:https://www.scilifelab.se/event/maximizing-exclusivity-in-the-life-sciences/
LOCATION:Online event via Zoom
CATEGORIES:Event
ORGANIZER;CN="OligoNova - Part of the Drug Discovery and Development Platform":MAILTO:par.matsson@oligonova.org
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20241106T121500
DTEND;TZID=Europe/Stockholm:20241106T130000
DTSTAMP:20260403T201205
CREATED:20241018T123620Z
LAST-MODIFIED:20241028T142914Z
UID:10001384-1730895300-1730898000@www.scilifelab.se
SUMMARY:Precisionsmedicin vid autoimmuna sjukdomar
DESCRIPTION:Välkommen till ett lunchseminarium om spännande framsteg inom Sjögrens sjukdom och MS som pågår här i Uppsala.  \n\n\n\nFör att kunna ge patienter med autoimmuna sjukdomar precisionsmedicin är det viktigt att identifiera undergrupper av patienter som löper risk att drabbas av svårare sjukdom och som kan ha bäst nytta av specifik behandling\, samt att genomföra nya behandlingar i kliniska studier. Vi lyfter framgångsrika exempel på detta inom Sjögrens sjukdom och MS i detta seminarium. \n\n\n\nProgram\n\n\n\nSjögrens sjukdom – ett steg mot precisionsmedicinGunnel Nordmark\, överläkare och professor i reumatologi\, Akademiska Sjukhuset\, Uppsala universitet \n\n\n\nAutolog blodstamcellstransplantation som behandling för MSJoachim Burman\, överläkare och docent i neurologi\, Akademiska Sjukhuset\, Uppsala universitet \n\n\n\nAlla registrerade bjuds på enklare lunchmacka och dryck. \n\n\n\nSeminariet är ett samarrangemang mellan Uppsala universitet\, Akademiska sjukhuset\, Region Uppsala och SciLifeLab. \n\n\n\nPrecision Medicine Centre Uppsala\n\n\n\nPrecisionsmedicin Akademiska\n\n\n\nSciLifeLab Capability Precision medicine\n\n\n\n\nhttps://www.scilifelab.se/capabilities/precision-medicine/
URL:https://www.scilifelab.se/event/precisionsmedicin-vid-autoimmuna-sjukdomar/
LOCATION:Hedstrandsalen | Ingång 70\, Akademiska sjukhuset\, Uppsala
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20241106T160000
DTEND;TZID=Europe/Stockholm:20241106T170000
DTSTAMP:20260403T201205
CREATED:20241009T122056Z
LAST-MODIFIED:20241105T095954Z
UID:10001370-1730908800-1730912400@www.scilifelab.se
SUMMARY:Imaging the molecular processes of cell division across scales
DESCRIPTION:Program \n\n\n\n15:40Coffee and cake served16:00Imaging the molecular processes of cell division across scalesJan Ellenberg\, Director SciLifeLab16:45QuestionsModerator: Per Ljungdahl\, SciLifeLab Campus Solna Director17:00Meet the speakers fika Room Earth\, arranged separately by the Postdoc & PhD-council\n\n\n\n\n\n\n\nSpeaker: Jan Ellenberg\, SciLifeLab Director \n\n\n\nJan Ellenberg is distinguished for many contributions to the cell biology and imaging field. The majority of these were made at the European Molecular Biology Laboratory (EMBL) where he is Senior Scientist and Head of the Cell Biology and Biophysics Unit. His major research contributions cover several aspects of the cell division cycle and nuclear organization\, including systematic analysis of mitosis\, nuclear pore complex structure and assembly\, as well as chromatin organization and formation and segregation of mitotic and meiotic chromosomes. Since July 2024\, Professor Ellenberg is appointed Director of SciLifeLab. \n\n\n\nHis goal has been to obtain structural and functional measures of the required molecular machinery inside cells using quantitative 4D imaging\, single molecule spectroscopy\, as well as light sheet and super-resolution microscopy\, which his group is constantly developing and automating to address all molecular components comprehensively. \n\n\n\n\n\nRegister HERE\n\n\n\n \n\n\n\nHost: Per Ljungdahl\, Campus Solna Director
URL:https://www.scilifelab.se/event/spotlight-seminar-jan-ellenberg/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2023/10/Campus-solna-seminar-picture.jpg
ORGANIZER;CN="Spotlight Seminar Series":MAILTO:events@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20241107T090000
DTEND;TZID=Europe/Stockholm:20241107T170000
DTSTAMP:20260403T201205
CREATED:20240506T080817Z
LAST-MODIFIED:20241030T164604Z
UID:10001254-1730970000-1730998800@www.scilifelab.se
SUMMARY:Advancing archaeology with multi-disciplinary analysis
DESCRIPTION:Archaeology thrives on its intrinsic interdisciplinary nature\, drawing from a diverse range of scientific disciplines. SciLifeLab\, together with ArchLab\, Sweden’s newly initiated national research infrastructure for archaeological laboratories\, plays a key role in advancing these investigations by providing access to a wide array of analytical tools and methodologies. \n\n\n\nThe aim of this symposium is to demonstrate and discuss the powerful combination of techniques such as DNA analysis\, isotope analysis\, dating methodologies\, palaeobotany\, osteological analysis\, spatial analysis\, and environmental archaeology\, to address key research questions concerning the past. \n\n\n\nSciLIfeLab\nAncient DNA\nFoto. Mikael Wallerstedt\n\n\n\nAttendance is free of charge and on-site participation includes lunch and coffee but registration is required. \n\n\n\nRegister here\n\n\n\nProgram\n09:00Welcome and introduction to multidisciplinary archaeologyPhil Buckland\, Department of Historical\, Philosophical and Religious Studies\, Umeå University\, Sweden09:30Keynote presentation: Building bridges: practices of interdisciplinary researchMari Tõrv\, Department of Archaeology\, University of Tartu\, Estonia10:10Coffee break10:40Bringing together life history studies from isotope analysis with ancient DNA. Hannah Moots\, Dept. of Zoology\, Stockholm University\, Sweden11:00A Migration period Lady from Viken\, Uppland – methodological issues & cultural historical frameworkTorun Zachrisson\, Upplandsmuseet\, Sweden11:20DNA analyses of archaeological cereal finds: challenges and possibilities Matti Leino\, Dept. of Archaeology and Classical Studies\, Stockholm University\, Sweden11:40Multi-disciplinary analyses of intra-site variation at Neolithic AjvideHelena Malmström\, Dept. of Organismal Biology\, Uppsala University\, Sweden12:00Mingle lunch with possibility for consultation with archaeological analysis service providers.13:30Crisis\, Conflict & Climate – an archaeological research program advancing multi-disciplinary analysisSven Isaksson\, Dept. of Archaeology and Classical Studies\, Stockholm University\, Sweden13:50From Bison to Aurochs: Exploring the Prey Preferences of Mesolithic South Scandinavians through Ancient DNA AnalysisErika Rosengren\, Dept. of Archaeology and Ancient History\, Lund University\, Sweden14:10Odontology in archaeology- multidisciplinary examinations of teeth and jawsCarolina Bertilsson\, Institute of Odontology\, University of Gothenburg\, Sweden14:30The socio-cultural dynamics of (some of) the last hunter-gatherer communities in Western Europe: a multidisciplinary approachLuciana Simoes\, Dept. of Organismal Biology\, Uppsala University\, Sweden14:50Coffee break15:30Panel discussion on multi-disciplinary analysis in archaeologyRita Peyroteo Stjerna\, Dept. of Organismal Biology\, Uppsala University\, SwedenPhil Buckland\, Department of Historical\, Philosophical and Religious Studies\, Umeå University\, SwedenCarina Schebusch\, Dept. of Organismal Biology\, Uppsala University\, SwedenMatthew Collins\, Section for Geobiology\, University of Copenhagen\, DenmarkMari Tõrv\, Department of Archaeology\, University of Tartu\, Estonia16:20Keynote presentation: Strained and fragmented: how manuscript studies could be a focus for interdisciplinary research across ScandinaviaMatthew Collins\, Section for Geobiology\, University of Copenhagen\, Denmark17:00 End of symposium\n\n\n\n \n\n\n\n \n\n\n\n \n\n\n\n\nOrganizers\n\nSciLifeLab Ancient DNA unit\n\n\n\nArchlab national research infrastructure\n\n\n\nSwedigarch national research infrastructure\n\n\n\nUppsala University Human Evolution research program\n\n\n\nCentre for Palaeogenetics\n\n\n\n\nContact: Magnus Lundgren\, magnus.lundgren@scilifelab.uu.se.
URL:https://www.scilifelab.se/event/advancing-archaeology-with-multi-disciplinary-analysis/
LOCATION:Humanities Theater\, Engelska parken\, Uppsala\, 75238\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/09/21A0115-scaled.jpg
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20241107T120000
DTEND;TZID=Europe/Stockholm:20241107T130000
DTSTAMP:20260403T201205
CREATED:20240708T141641Z
LAST-MODIFIED:20241025T081132Z
UID:10001302-1730980800-1730984400@www.scilifelab.se
SUMMARY:Campus Solna Seminar Series: Mengxiao He & Pauline Granit
DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 20 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nPhD students that are attending the Campus Solna Seminar lectures will have the opportunity to gain credits. For the syllabus and instructions on how to obtain these credits\, read this document. Please contact your own department at your host University to confirm.See here the full schedule for this semester. \n\n\n\nThis week:\n\n\n\n\n\n\nMengxiao He\n\n\n\nJoakim Lundeberg – alpha 3 \n\n\n\nSpatial analysis of metastatic prostate cancer: Tracing metastatic tumor subclones and unveiling microenvironment dynamics \n\n\n\n\n\nPauline Granit\n\n\n\nPer-olof Syren – gamma 5 \n\n\n\nDeveloping visible light-driven biocatalytic cross-copulings \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page.
URL:https://www.scilifelab.se/event/campus-solna-seminar-series-mengxiao-he-pauline-granit/
LOCATION:Milkyway SciLifeLab Solna\, Tomtebodavägen 23\, Solna
CATEGORIES:Community
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/09/IMG_20221103_124630107_HDR-scaled.jpg
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20241108T120000
DTEND;TZID=Europe/Stockholm:20241108T130000
DTSTAMP:20260403T201205
CREATED:20240930T054903Z
LAST-MODIFIED:20241106T070829Z
UID:10001366-1731067200-1731070800@www.scilifelab.se
SUMMARY:Pushing the boundaries of performance with the next generation of single cell solutions
DESCRIPTION:Imagine seeing biology in new ways! Join this joint seminar between 10x Genomics and Clinical Genomics Gothenburg where Johanna Stergiadou\, Science & Technology Advisor at10x Genomics\, explains how the Chromium Single Cell solutions can help push the boundaries of your research.\n\n\n\nThe vast complexities of biology require approaches that build a complete picture from single cells to tissues and beyond. Single cell analysis is a powerful technique to characterize complex tissue types\, identify rare cell populations\, uncover regulatory relationships between genes\, and track cell trajectories. \n\n\n\nJoin us for this seminar to learn how Chromium Single Cell solutions from 10x Genomics can help you push the boundaries of your research. Dissect cell-type differences\, investigate the innate and adaptive immune system\, detect novel subtypes and biomarkers\, and map the epigenetic landscape cell by cell. Uncover molecular insights from fresh or fixed samples\, including FFPE\, with robust\, flexible workflows that simplify experimental logistics. Unravel highly complex biological systems\, while bringing into focus the details that matter most. \n\n\n\n\nregistration\n\n\n\n\n \n\n\n\nLunch will be provided for onsite participation.Onsite registration deadline: November 5 \n\n\n\n\nZoom link
URL:https://www.scilifelab.se/event/pushing-the-boundaries-of-performance-with-the-next-generation-of-single-cell-solutions/
LOCATION:Birgit Thilander Lecture Hall\, Medicinaregatan 3\, Göteborg
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2024/09/Banner_crop2.png
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20241108T140000
DTEND;TZID=Europe/Stockholm:20241108T150000
DTSTAMP:20260403T201205
CREATED:20241028T075658Z
LAST-MODIFIED:20250115T125101Z
UID:10001387-1731074400-1731078000@www.scilifelab.se
SUMMARY:Swedish Reference Genome Portal Launch
DESCRIPTION:Join us for the official launch of the Swedish Reference Genome Portal. This free service is developed and maintained by the DDLS Data Science Node in Evolution and Biodiversity (DSN-EB) team as part of the SciLifeLab Data Platform\, operated by the SciLifeLab Data Centre. At this event\, we will demonstrate how the Genome Portal reduces barriers to the visualisation and interpretation of genome data studied in Sweden\, while facilitating collaboration\, showcasing researchers’ work\, and promoting Open Science and FAIR data sharing. \n\n\n\nThe Swedish Reference Genome Portal is a web platform for showcasing\, aggregating\, and visualising non-human eukaryotic genome assemblies and genome annotations (co-)produced by researchers affiliated with Swedish institutions. The Genome Portal aims to: \n\n\n\n\nHighlight and showcase genome research conducted in Sweden.\n\n\n\nLower barriers to accessing\, visualising\, and interpreting genome data.\n\n\n\nPromote the publication of genomic annotations\, which are rarely shared.\n\n\n\nEnsure all data displayed on the Genome Portal aligns with FAIR principles and is available in public repositories.\n\n\n\n\nThe DSN-EB team comprises system developers\, data stewards\, and bioinformaticians affiliated with SciLifeLab Data Centre and the National Bioinformatics Infrastructure Sweden (NBIS)\, based at Uppsala University and the Swedish Museum of Natural History. \n\n\n\nThis service is supported by SciLifeLab and the Knut and Alice Wallenberg Foundation through the Data-Driven Life Science (DDLS) program\, as well as by the Swedish Foundation for Strategic Research (SSF). \n\n\n\nRegistration\n\n\n\n \n\n\n\nAgenda\n\n\n\n2:00-2:10 pmWelcome and introduction\, Henrik Lantz\, NBIS2:10-2:45 pmOverview of the Swedish Reference Genome Portal Introduction and live demo\, Daniel Brink\, SciLifeLab Data CentreTechnical implementation\, Rory Crean\, SciLifeLab Data CentreFeatures that boost and facilitate researchers’ work\, Angela P. Fuentes-Pardo\, SciLifeLab Data Centre2:45-3:00 pmQ&A\n\n\n\nRegistration will be open until the day of the event (November 8th\, 2024) at 12:00 CEST. \n\n\n\nThis event will be recorded and made available on the SciLifeLab Youtube channel. \n\n\n\nFor more information\, please contact dsn-eb@scilifelab.se.
URL:https://www.scilifelab.se/event/swedish-reference-genome-portal-launch/
LOCATION:Online event via Zoom
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20241111T090000
DTEND;TZID=Europe/Stockholm:20241115T170000
DTSTAMP:20260403T201205
CREATED:20240619T091221Z
LAST-MODIFIED:20240920T111426Z
UID:10001282-1731315600-1731690000@www.scilifelab.se
SUMMARY:Introduction to Python - with application to bioinformatics
DESCRIPTION:National course open for PhD students\, postdocs\, researchers and other employees in all Swedish universities\, in need of fundamental Python skills. We also welcome applications from outside of Sweden and from the non-academic sector\, for more info contact us! \n\n\n\n\n\n\n\nImportant dates and information\n\n\n\nApplication opens: 2024-06-11 \n\n\n\nApplication closes: 2024-09-30 \n\n\n\nConfirmation to accepted students: 2024-10-02 \n\n\n\nCourse Leader and teachers: Dimitris Bampalikis (CL)\, Jeanette Tångrot (CL)\, Nanjiang Shu\, Nina Norgren \n\n\n\nContact: edu.intro-python@nbis.se \n\n\n\n\n\n\n\nCourse locations\n\n\n\nSciLifeLab Uppsala\, Entrance C11\, BMC\, Husargatan 3\, Uppsala OR Umeå University\, Naturvetarhuset\, room NAT.D.370 OR Lund University\, Biologihuset\, rooms Cerebrum höger (D215b) and Cerebrum vänster (D215a) \n\n\n\n\n\n\n\n\n\nApplication\n\n\n\n\n\nCourse website\n\n\n\n\n\n\n\n\n\nCourse fee\n\n\n\nA course fee* of 3000 SEK  for academic participants and 15000 SEK for non-academic participants will be invoiced to accepted participants. The fee includes lunches\, coffee and snacks\, and course dinner. \n\n\n\n*Please note that NBIS cannot invoice individuals \n\n\n\n\n\n\n\nCourse content\n\n\n\n This course provides a practical introduction to the writing of Python programs for the complete novice. Participants are led through the core aspects of Python illustrated by a series of example programs. Upon completion of the course\, attentive participants will be able to write simple Python programs from scratch and to customize more complex code to fit their needs. \n\n\n\nFormat \n\n\n\nThis course runs in parallel on-site in Uppsala\, Umeå and Lund. Lectures will be streamed online from our Uppsala site to the Umeå and Lund sites. Several teaching assistants will be present in all three classrooms all week to help with exercises and questions. When registering you will be asked to which site you apply. \n\n\n\nThe course consists of a mix of presentations\, demonstrations\, and practical exercises (either in the lab with assistants or on your own). Prior to the course\, you can read a companion book “Programming Python”\, or “Learning Python”. Such a book will also prove useful for your programming tasks\, after the course is over. It is however not required\, and material will be presented in class. \n\n\n\nTopics covered will include: \n\n\n\n\nCore concepts about Python syntax: Data types\, blocks and indentation\, variable scoping\, iteration\, functions\, methods and arguments\n\n\n\nDifferent ways to control program flow using loops and conditional tests\n\n\n\nRegular expressions and pattern matching\n\n\n\nWriting functions and best-practice ways of making them usable\n\n\n\nReading from and writing to files\n\n\n\nCode packaging and Python libraries\n\n\n\nHow to work with biological data using external libraries.\n\n\n\n\n\n\n\n\n\n\nLearning Outcomes\n\n\n\nUpon completion of this course\, you will be able to: \n\n\n\n\nDescribe and apply basic concepts in Python\, such as:LoopsIf/else statementsFunctions\n\nReading/writing to files\n\n\n\n\n\nBeing able to edit and run Python code\n\n\n\nWrite file-processing Python programs that produce output to the terminal and/or external files\n\n\n\nCreate stand-alone python programs to process biological data\n\n\n\nKnow how to develop your skills in Python after the course (including debugging)\n\n\n\n\n\n\n\n\nEntry requirements\n\n\n\nThe course is suitable for complete beginners and assumes no prior programming experience (beyond the ability to use a text editor). A very basic knowledge of UNIX would be an advantage\, such as navigating through folders and issuing commands at a shell prompt. We will not teach UNIX in detail: Other courses are available at SciLifeLab for it. Make sure your laptop has python installed for the practical exercises. \n\n\n\n\n\n\n\nSelection criteria\n\n\n\nDue to limited space the course can accommodate a maximum of 25 participants in Uppsala and 15 in Umeå and Lund. If we receive more applications\, participants will be selected based on selection criteria\, including (but not limited to) correct entry requirements\, motivation to attend the course\, as well as gender and geographical balance. \n\n\n\nPlease note that NBIS training events do not provide any formal university credits. The training content is estimated to correspond to 1.5 hp credits\, however the estimated credits are just recommendations. If formal credits are crucial\, the student needs to confer with the home department before submitting a course application in order to establish whether the course is valid for formal credits or not.
URL:https://www.scilifelab.se/event/introduction-to-python-with-application-to-bioinformatics/
LOCATION:Uppsala University\, Lund University or Umeå University
CATEGORIES:Course
ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20241112T120000
DTEND;TZID=Europe/Stockholm:20241112T170000
DTSTAMP:20260403T201205
CREATED:20240909T134717Z
LAST-MODIFIED:20241111T120146Z
UID:10001351-1731412800-1731430800@www.scilifelab.se
SUMMARY:Translational research as a boost for Swedish Life Science
DESCRIPTION:Learnings from the SciLifeLab model for drug discovery research\, ten years perspective \n\n\n\nThis symposium is part of the 10 year anniversary of the Drug Development and Discovery Platform at SciLifeLab. Translational research as a boost for Swedish Life Science: Learnings from the SciLifeLab model for drug discovery research\, ten years perspective \n\n\n\n \n\n\n\nregistration\n\n\n\nProgram \n\n\n\nProgram 10 års jubileum DDD_241107Download
URL:https://www.scilifelab.se/event/translational-research-as-a-boost-for-swedish-life-science/
LOCATION:Hotel Birger Jarl\, Birger Jarlsgatan 61\, Stockholm\, Sweden
CATEGORIES:Event
END:VEVENT
END:VCALENDAR