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X-WR-CALDESC:Events for SciLifeLab
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TZID:Europe/Stockholm
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BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220913T130000
DTEND;TZID=Europe/Stockholm:20220913T150000
DTSTAMP:20260404T171109
CREATED:20220622T110134Z
LAST-MODIFIED:20220912T074601Z
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SUMMARY:Spatial and Single Cell Biology Webinar
DESCRIPTION:The Spatial and Single Cell Biology Platform at SciLifeLab invites you to a virtual event where you can learn about the service we provide within the field of spatial and single cell omics. Take the opportunity to learn about cutting edge methods including spatial transcriptomics with Visium\, in situ sequencing\, spatial proteomics using highly multiplexed imaging\, spatial metabolomics with MALDI imaging and advanced FISH technologies. The presentations will be given by our experts in there respective methods\, working within the platform.  \n\n\n\nThe event is open for anyone to attend\, who are interested in including spatial omics in their research projects or with a general interest to learn about the methods. \n\n\n\nregister here\n\n\n\n\n\n\n\nProgram\n\n\n\n13:00 Short introduction to the Spatial and Single Cell Biology platform13:10 Single cell sequencing  Anja Mezger13:25Spatial Transcriptomics  Xesus Abalo13:40In situ sequencing  Chika Yokota13:55Spatial Proteomics (multiplexed IF) Charlotte Stadler14:10Advanced FISH Technologies Quentin Verron14:25Spatial Mass Spectrometry Anna Nilsson14:40Additional Q&A and end of webinar
URL:https://www.scilifelab.se/event/spatial-and-single-cell-biology-webinar/
LOCATION:Online event via Zoom
CATEGORIES:Event
ORGANIZER;CN="Spatial and Single Cell Biology Platform":MAILTO:charlotte.stadler@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220913T150000
DTEND;TZID=Europe/Stockholm:20220913T164500
DTSTAMP:20260404T171109
CREATED:20220630T181908Z
LAST-MODIFIED:20220818T095034Z
UID:10000639-1663081200-1663087500@www.scilifelab.se
SUMMARY:SciLifeLab Navet Open House
DESCRIPTION:Welcome to SciLifeLab Navet Open House on September 13 from 15:00 to learn more about SciLifeLab and the possibility to book meetings in Navet. Take the chance to network and talk science! \n\n\n\n\n\nSome of the activities:• General presentation of SciLifeLab 15:30\, E10:1309\, Jenny Alfredsson\, Acting Head of Operations• A Quiz tour as a walk around Navet’s meeting rooms 15:00 – 16:00. Price ceremony at 16:15• SciLifeLab poster exhibition• Mingle photographer on site• Relaxed networking with the opportunity to meet several SciLifeLab representatives on site \n\n\n\nIf SciLifeLab representatives want to participate in the poster exhibition\, please contact lokalbokning@SciLifeLab.uu.se. \n\n\n\n\n\n\n\nFor catering reasons\, please Register here
URL:https://www.scilifelab.se/event/scilifelab-navet-open-house/
LOCATION:Navet\, SciLifeLab Uppsala\, SciLifeLab Uppsala\, BMC C11\, Husargatan 3\, Uppsala\, 75237\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/06/Navet-fasad-innegård-scaled.jpg
ORGANIZER;CN="Operations office":MAILTO:events@SciLifeLab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220913T160000
DTEND;TZID=Europe/Stockholm:20220913T170000
DTSTAMP:20260404T171109
CREATED:20220905T092248Z
LAST-MODIFIED:20220914T005216Z
UID:10000668-1663084800-1663088400@www.scilifelab.se
SUMMARY:Mass spectrometry-based proteomics: technological advances and their application to plasma and single cell type resolved tissue proteo
DESCRIPTION:Mass spectrometry-based proteomics: technological advances and their application to plasma and single cell type resolved tissue proteomics \n\n\n\nWelcome to a lecture by Professor Matthias Mann\, Max Planck Institute\, Germany. \n\n\n\n16.00-17.00 Tuesday September 13Air & Fire (Gamma 2) or via zoom https://kth-se.zoom.us/s/69393882589\n\n\n\n\n\n\n\nMatthias Mann obtained his PhD in chemical engineering at Yale\, contributing to the Nobel Prize for his supervisor John Fenn for electrospray ionization. He is a director at the Max Planck Institute of Biochemistry\, Munich and also director of the Department of Proteomics\, Novo Nordisk Foundation Center for Protein Research at the University of Copenhagen. He has obtained numerous prizes and is one of the most cited scientists with an h-factor of 250 and 300\,000 total citations (Google Scholar). He has pioneered advances in sample preparation\, chromatography\, mass spectrometry and computer algorithms\, making mass spectrometry applicable to molecular biology. Apart from proteomics technology development\, the team works on biological questions in systems biology. Today\, the main focus is on clinically relevant topics\, especially the analysis of the blood plasma proteome and cancer tissues at the single-cell level. \n\n\n\nThis keynote lecture is part of the FEBS Advanced Course – Exploring the Human Proteome
URL:https://www.scilifelab.se/event/mass-spectrometry-based-proteomics-technological-advances-and-their-application-to-plasma-and-single-cell-type-resolved-tissue-proteo/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/04/FEBS-Advanced-course.png
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220914T130000
DTEND;TZID=Europe/Stockholm:20220914T140000
DTSTAMP:20260404T171109
CREATED:20220905T091153Z
LAST-MODIFIED:20220906T122803Z
UID:10000666-1663160400-1663164000@www.scilifelab.se
SUMMARY:Mapping the development and regeneration of reproductive tissues
DESCRIPTION:Mapping the development and regeneration of reproductive tissues \n\n\n\nWelcome to a lecture by Roser Vento-Tormo\, Wellcome Sanger Institute\, UK. \n\n\n\n13.00-14.00 Wednesday September 14Air & Fire (Gamma 2) or via zoom https://kth-se.zoom.us/s/69393882589\n\n\n\n\n\n\n\nVento-Tormo’s research interest is to understand the influence of cellular microenvironments on individual cellular identities and responses\, in the context of development and immunity. Her team employs single-cell and spatial transcriptomics methods to deconstruct the cell signals in human organs and tissues\, and utilise this information to inform the reconstruction of novel in vitro models. Essential for this work\, is the novel computational tools her team develops to build cell–cell interactions networks from transcriptomics data. In her predoctoral research\, she studied the interplay between cell signalling and epigenetic machinery key to regulating cellular fate decisions in myeloid cells. She pursued her postdoctoral studies in the Teichmann laboratory as an EMBO / HFSP fellow\, where she developed CellPhoneDB.org\, a computational tool to study cell-cell communication from single-cell transcriptomics data. She used CellPhoneDB to disentangle the complex communication between maternal and fetal cells in the uterine-placental interface during early human pregnancy. Vento-Tormo work has been funded by many recognised international agencies (H2020\, MRC\, CZI\, Wellcome-LEAP)\, and she has recently obtained the Early Career Research Award from the Biochemistry Society (2021). \n\n\n\nThis keynote lecture is part of the FEBS Advanced Course – Exploring the Human Proteome
URL:https://www.scilifelab.se/event/mapping-the-development-and-regeneration-of-reproductive-tissues/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/04/FEBS-Advanced-course.png
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220914T140000
DTEND;TZID=Europe/Stockholm:20220914T150000
DTSTAMP:20260404T171109
CREATED:20220905T092055Z
LAST-MODIFIED:20220906T122905Z
UID:10000667-1663164000-1663167600@www.scilifelab.se
SUMMARY:Systems Analysis of Human Metabolism for Identification of Drug Targets and Biomarkers
DESCRIPTION:Systems Analysis of Human Metabolism for Identification of Drug Targets and Biomarkers \n\n\n\nWelcome to a lecture by Professor Jens Nielsen\, \n\n\n\nBioinnovation Institute\, Copenhagen\, Denmark. \n\n\n\n \n\n\n\n \n\n\n\n\n\n\n\nJens Nielsen is MSc in Chemical Engineering and PhD (1989) in Biochemical Engineering from the Danish Technical University (DTU). Fulbright visiting professor at MIT in 1995-1996. Professor at DTU in 1998. In 2008 he was recruited as Professor to Chalmers University of Technology\, Sweden. In 2015 he was founding Head of the Department of Biology and Biological Engineering\, which now encompass more than 200 people. Jens Nielsen was also a co-founder of the Novo Nordisk Foundation Center for Biosustainability that now have more than 300 people affiliated\, for which he served as CSO 2013-2018. From 2019 CEO of the BioInnovation Institute in Denmark\, which is a new institute financed by USD0.5B that fosters translational research and support new spin-out companies in life sciences. He has trained more than 280 scientists in his research group and published >850 publications that have been cited more than 98\,000 times (current H-factor 142). Inventor of >50 patents and founder of seven biotech companies. Has received numerous awards\, including the ENI Award\, the Eric and Sheila Samson Prime Minister Prize for Transportation Fuels\, the Novozymes Prize\, and the Gold Medal from the Royal Swedish Academy of Engineering Sciences. Member of 12 academies\, including NAS\, NAE\, Chinese Academy of Engineering\, EMBO and Royal Swedish Academy of Science. He will discuss the challenges of using systems medicine for advancing the development of personalized and precision medicine\, and it will be illustrated how the concept of genome-scale metabolic models can be used for integrative analysis of big data with the objective of identifying novel biomarkers that are foundational for personalized and precision medicine. \n\n\n\nThis keynote lecture is part of the FEBS Advanced Course – Exploring the Human Proteome
URL:https://www.scilifelab.se/event/systems-analysis-of-human-metabolism-for-identification-of-drug-targets-and-biomarkers/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/04/FEBS-Advanced-course.png
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220915T103000
DTEND;TZID=Europe/Stockholm:20220916T133000
DTSTAMP:20260404T171109
CREATED:20220620T071511Z
LAST-MODIFIED:20220831T142048Z
UID:10000628-1663237800-1663335000@www.scilifelab.se
SUMMARY:SciLifeLab Genomics platform retreat
DESCRIPTION:Very welcome to this event for the Genomics platform. We look forward to fun days with time to interact with new and old colleagues\, discuss science and our operation\, and get the latest information on the development of SciLifeLab and our platform. The meeting will take place at beautiful Haga Slott\, just outside of Enköping. \n\n\n\nThere will be buses that leave from BMC\, Uppsala and SciLifeLab Campus Solna at 09:00 on Sept. 15\, and return from Haga Slott at 13:30 on Sept. 16. \n\n\n\nRegistration has closed. \n\n\n\n\n\n\n\nFor questions about the program and participation\, contact magnus.lundgren@scilifelab.uu.se \n\n\n\nFor information about the venue\, see https://hagaslott.se/en/haga-castle/ \n\n\n\n\n\n\n\nProgram\n\n\n\nSeptember 1509:00 Buses depart from SciLifeLab Solna and BMC (Uppsala)10:00 Arrival Haga Slott and coffee10:30 The SciLifeLab Genomics platform: status\, plans and visions11:15 Scientific keynote “DeepTime genomics”\, Love Dalén\, Professor at Department of Zoology\, Stockholm University12:00 Lunch13:00 SciLifeLab national nodes: opportunities for synergies14:00 Check-in14:30 Coffee15:00 Social activity\, bring clothes and shoes suitable for being outside16:30 Free time for spa\, gym\, sauna swimming\, etc.18:00 Drinks reception19:00 DinnerSeptember 1609:00 Introduction to group discussion09:15 Group discussions\, including coffee break11:00 Summary of group discussions and meeting wrap-up12:00 Lunch13:30 Buses depart for SciLifeLab Solna and BMC (Uppsala)
URL:https://www.scilifelab.se/event/scilifelab-genomics-platform-retreat/
LOCATION:Haga slott\, Haga slott\, Enköping\, 745 93\, Sweden
CATEGORIES:Community
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220915T120000
DTEND;TZID=Europe/Stockholm:20220915T130000
DTSTAMP:20260404T171109
CREATED:20220818T145429Z
LAST-MODIFIED:20220907T191107Z
UID:10000648-1663243200-1663246800@www.scilifelab.se
SUMMARY:Campus Solna Seminar Series: Christoffer Mattsson Langseth
DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an  initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nThis week:\n\n\n\n\n\n\nTBD\n\n\n\nTBD \n\n\n\n\n\nChristoffer Mattsson Langseth\n\n\n\nMats Nilsson – gamma 4 \n\n\n\nSpatial mapping of oligodendroglial\, neuronal and immune cell-type heterogeneity in a model of multiple sclerosis \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page.
URL:https://www.scilifelab.se/event/campus-solna-seminar-series-sep-15/
LOCATION:Milkyway SciLifeLab Solna\, Tomtebodavägen 23\, Solna
CATEGORIES:Community
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/08/logo_PhD_Postdoc_Council.png
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220915T180000
DTEND;TZID=Europe/Stockholm:20220915T190000
DTSTAMP:20260404T171109
CREATED:20220906T122422Z
LAST-MODIFIED:20220906T122503Z
UID:10000672-1663264800-1663268400@www.scilifelab.se
SUMMARY:Molecular analysis of human diversity and its impact on drug discovery using iPS cells
DESCRIPTION:Molecular analysis of human diversity and its impact on drug discovery using iPS cells \n\n\n\n \n\n\n\nWelcome to a lecture by Professor Angus I. Lamond\, \n\n\n\nUniversity of Dundee\, UK. \n\n\n\n16.00-17.00 Thursday September 15 \n\n\n\nAir & Fire (Gamma 2) or via zoom https://kth-se.zoom.us/s/69393882589 \n\n\n\n\n\n\n\nProfessor Lamond has over thirty years of experience as a Principal Investigator\, studying molecular mechanisms regulating gene expression and pre-mRNA splicing. This includes major contributions to the biochemical analysis of the human splicing machinery and to the study of functional compartments and subnuclear bodies in mammalian cells. The AIL group have developed new methods and technical approaches in these fields that have advanced mechanistic studies at the molecular and cellular levels\, spanning biochemical\, microscopy and MS-based proteomics technologies. During the past fifteen years\, the AIL laboratory has developed and applied state of the art mass spectrometry-based proteomic approaches in research projects studying molecular mechanisms regulating gene expression in both human cells and model organisms. This includes\, specifically\, integrated poly-omics analyses of human induced pluripotent stem cells (hiPSCs)\, derived from both healthy donors and patient cohorts with inherited disorders. Other studies have focused on proteome dynamics in the context of biological response mechanisms and ongoing studies identifying and characterizing small molecule modulators of alternative splicing and analysis of how splicing mechanisms affect cell proteomes\, protein isoform expression and resulting cell phenotypes. He will describe the progress in using both quantitative\, MS-based proteomics and high throughput imaging technologies to characterize libraries of human induced pluripotent stem cell (iPSC) lines\, derived from hundreds of different donors\, and show how comparisons of such iPSC lines can provide a novel approach for assessing mechanisms of variable drug response and help to deliver more safe new drugs that cater for the needs of diverse human populations. \n\n\n\nThis keynote lecture is part of the FEBS Advanced Course – Exploring the Human Proteome
URL:https://www.scilifelab.se/event/molecular-analysis-of-human-diversity-and-its-impact-on-drug-discovery-using-ips-cells/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/04/FEBS-Advanced-course.png
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220919T100000
DTEND;TZID=Europe/Stockholm:20220919T110000
DTSTAMP:20260404T171109
CREATED:20220823T174147Z
LAST-MODIFIED:20220823T174148Z
UID:10000652-1663581600-1663585200@www.scilifelab.se
SUMMARY:Ribosome heterogeneity and specialization during temperature acclimation in plants
DESCRIPTION:Seidel\, Max Planck Institute of Molecular Plant Physiology\, Potsdam\, GermanyDate: Monday 19 September 2022Time: 10.00 – 11.00Location: Gamma“Ribosome heterogeneity and specialization during temperature acclimation in plants”Host: Alexey Amunts
URL:https://www.scilifelab.se/event/ribosome-heterogeneity-and-specialization-during-temperature-acclimation-in-plants/
LOCATION:Becquerel\, SciLifeLab\, Tomtebodavägen 23\, Solna
CATEGORIES:Community
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220921T110000
DTEND;TZID=Europe/Stockholm:20220922T120000
DTSTAMP:20260404T171109
CREATED:20220825T104709Z
LAST-MODIFIED:20220902T094832Z
UID:10000653-1663758000-1663848000@www.scilifelab.se
SUMMARY:AIDA-SciLifeLab days
DESCRIPTION:Welcome to AIDA-SciLifeLab days in Uppsala\, September 21-22\n\n\n\nAnalytic Imaging Diagnostics Arena\, AIDA\, is a national arena for research and innovation around artificial intelligence\, AI\, for medical image analysis. Here\, academia\, healthcare and industry meet to translate technological advances in AI technology into patient benefits in the form of clinically useful tools. AIDA is an initiative within the Strategic Innovation Program Medtech4Health\, a joint venture of VINNOVA\, Formas and the Energy Agency. AIDA offers funding\, technical infrastructure and a broad expert community. The community meets in regular intervals at AIDA-days; seminar days with current medical imaging themes. \n\n\n\n\n\n\n\nThe AIDA days are on tour\, our first stop was Stockholm KTH\, and this time we are happy to visit Uppsala. SciLifeLab and Carolina Wählby are kindly hosting the event. We will now have the great opportunity to get an insight into the work on AI in medical imaging in Uppsala – focus areas and ongoing projects. We can look forward to presentations in quantitative microscopy\, image classification\, image registration and the European Big Picture project (a central repository for digital pathology slides). In addition\, we will listen to two final AIDA project presentations by the research groups of Robin Strand – MRI guided real-time adaptive radiotherapy and Joel Kullberg – Advanced Body Composition Analysis in SCAPIS. Each AIDAday will end with a study visit: at the radiology department (MR-Linac) and the pathology department\, respectively.  \n\n\n\n\n\n\n\nRegistration\n\n\n\n\n\n\n\nProgram September 21\n\n\n\nProgram September 22\n\n\n\n\n\n\n\nShort Program\n\n\n\n \n\n\n\n\n\nSEPT. 21:Venue: Nya Ångström\, lecture hall 101136 B (floor1)11:00Internal meeting for AIDA members only 12:00Lunch (recommendation “Rullan”\, Nya Ångström)13:00Official program17:00End of program19:00After Work at Stationen (optional)SEPT. 22:Venue: SciLifeLab Navet\, Trippelrummet\, BMC\, entrance C1109:00Official program12:00End of program\n\n\n\n\n\n\n\n\nLunch and AW at your own expense. \n\n\n\n\n\n\nFor those who are not able to attend the AIDAdays physically\, a Zoom link will be distributed to registered participants prior to the meeting. Please register here! \n\n\n\nMost Welcome!
URL:https://www.scilifelab.se/event/aida-scilifelab-days/
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/08/image001.jpg
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220922T120000
DTEND;TZID=Europe/Stockholm:20220922T130000
DTSTAMP:20260404T171109
CREATED:20220818T153954Z
LAST-MODIFIED:20220912T093259Z
UID:10000649-1663848000-1663851600@www.scilifelab.se
SUMMARY:Campus Solna Seminar Series: Yuying Cheng and Osheen Sharma
DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an  initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nThis week:\n\n\n\n\n\n\nYuying Cheng\n\n\n\nSimon Elsässer – alpha 4 \n\n\n\nDefining histone variant H3.3 dynamics using pulse-chase experiment and computational modeling \n\n\n\n\n\nOsheen Sharma\n\n\n\nBrinton Seashore-Ludlow – alpha 4 \n\n\n\nImage based Drug Mechanism of Action Clustering using Deep Neural Networks \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page.
URL:https://www.scilifelab.se/event/campus-solna-seminar-series-sep-22/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Community
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/08/logo_PhD_Postdoc_Council.png
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220926T080000
DTEND;TZID=Europe/Stockholm:20220930T170000
DTSTAMP:20260404T171109
CREATED:20220523T075158Z
LAST-MODIFIED:20220523T100120Z
UID:10000614-1664179200-1664557200@www.scilifelab.se
SUMMARY:Introduction to bioinformatics using NGS data
DESCRIPTION:This is a national workshop open to PhD students\, post-docs\, and other researchers affiliated to Swedish academia and healthcare. The workshop is organised by the National Bioinformatics Infrastructure Sweden (NBIS) and National Genomics Infrastructure (NGI). \n\n\n\nThis intense one-week workshop provides an introduction to the analysis of next generation sequencing data. Lectures on the theory of concepts will be paired with practical computational exercises in the Linux environment. The practical exercises will focus on data from the Illumina platform\, but we will discuss other sequencing platforms and the advantages and challenges to using their data during the lectures. \n\n\n\nNBIS training events do not provide any formal university credits. Attendees with full attendance and completion of tasks will be issued a certificate of participation indicating topics covered and duration of the workshop. For more detailed information about workshop syllabus\, learning outcomes and entry requirements\, please visit the workshop website. \n\n\n\nImportant dates\n\n\n\nWorkshop: 26-Sep-2022 – 30-Sep-2022 \n\n\n\nApplication opens: 23-May-2022 \n\n\n\nApplication closes: 19-Aug-2022 \n\n\n\nConfirmation to accepted students: 26-Aug-2022 \n\n\n\nCourse fee\n\n\n\nThis on-site training event costs 2000 SEK invoiced to the participant’s organisation. If you accept a position and do not participate (no-show) you will still be invoiced 2000 SEK. Please note that NBIS cannot invoice individuals. \n\n\n\nContact\n\n\n\nnbis.se \n\n\n\nMalin Larsson\, Martin Dahlö\, Roy Francis \n\n\n\n\n\n\n\n\nWorkshop Website\n\n\n\nApplication
URL:https://www.scilifelab.se/event/introduction-to-bioinformatics-using-ngs-data/
LOCATION:Navet\, SciLifeLab Uppsala\, SciLifeLab Uppsala\, BMC C11\, Husargatan 3\, Uppsala\, 75237\, Sweden
CATEGORIES:Course
ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220926T090000
DTEND;TZID=Europe/Stockholm:20220926T100000
DTSTAMP:20260404T171109
CREATED:20220923T132853Z
LAST-MODIFIED:20220923T132926Z
UID:10000689-1664182800-1664186400@www.scilifelab.se
SUMMARY:Multiscale Modelling of Cancer Cell Motility and Tumour Evolution
DESCRIPTION:Paul Bates\, Cricks institute\, UK\n\n\n\n \n\n\n\n \n\n\n\n \n\n\n\nMultiscale Modelling of Cancer Cell Motility and Tumour Evolution \n\n\n\nSince Inhibiting metastasis is as crucial as minimising tumour growth for efficient treatment of cancer\, we constructed a multiscale model of cancer cell motility\, with our primary focus being on amoeboid type cell motility of metastasising tumour cells in the extracellular matrix (ECM).  Our model covered a wide parameter space and provided a deeper understanding of the conditions governing the motility of the cell at multiscale levels. Both the extracellular conditions (e.g. ECM density) and intrinsic cell properties (e.g. relative distribution of contractile and expanding regions of the cell membrane) were investigated.  The aim was to identify the combination of intrinsic properties metastasising cells are more likely to use under different extracellular conditions. After extensive benchmarking of the computational model using in vitro data\, we were able to predict cancer cell motility in vivo and under a number of different combinations of motility inhibitory\, such as key kinase inhibitors. We have also developed multiscale computer models to investigate how tumours evolve based upon Intra-tumour genetic heterogeneity (ITH)\, which fuels ongoing clonal evolution. Despite clarified clonal structure and acknowledged role of ITH in disease progression within our recent tumour study\, investigating clear-cell renal cell carcinomas (ccRCCs)\, there lacks characterisation of ongoing evolution that may inform future risk. By the combination of computer modelling and experimental analysis\, we investigated spatial features of narrow-scale clone diversity (microdiversity) and parallel evolution on the impact of spatial tumour growth. We observed frequent microdiversity hotspots and parallel evolution near the tumour margin and uncovered a scaling relationship between the area spanned by a genomic alteration and the number of subclones within that area\, in simulated tumours of 66 ccRCCs. Furthermore\, in-silico time-course studies showed that different modes of spatial growth caused varying extents and tempos of subclonal diversification.  Interestingly\, evolutionary trajectories were often predictable early\, suggesting that spatially resolved sampling combined with sequencing may enable identification of evolutionary potential in early-stage tumours.
URL:https://www.scilifelab.se/event/multiscale-modelling-of-cancer-cell-motility-and-tumour-evolution/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220927T100000
DTEND;TZID=Europe/Stockholm:20220927T113000
DTSTAMP:20260404T171109
CREATED:20220919T131401Z
LAST-MODIFIED:20220920T053525Z
UID:10000682-1664272800-1664278200@www.scilifelab.se
SUMMARY:Next-Generation Cytogenomics with Optical Genome Mapping
DESCRIPTION:Clinical Genomics Stockholm has acquired a Saphyr optical mapper from Bionano Genomics and it will be available as a national service. We would like to provide more information on the instrument and applications by giving a seminar. \n\n\n\nClick here to sign up\n\n\n\nFlyer\n\n\n\nFlyer_symposium_stockholm-1Download
URL:https://www.scilifelab.se/event/next-generation-cytogenomics-with-optical-genome-mapping/
LOCATION:Wangari\, Widerströmska building\,\, Tomtebodavägen 18\, Solna\, Sweden
CATEGORIES:Event
ORGANIZER;CN="Clinical Genomics Platform":MAILTO:marcela.davila@gu.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220928T090000
DTEND;TZID=Europe/Stockholm:20220928T150000
DTSTAMP:20260404T171109
CREATED:20220629T154628Z
LAST-MODIFIED:20220715T122018Z
UID:10000638-1664355600-1664377200@www.scilifelab.se
SUMMARY:SciLifeLab symposium in superresolution microscopy
DESCRIPTION:We cordially welcome you to a symposium teaching applications of superresolution fluorescence microscopy from world leading experts in the field.  \n\n\n\nRegistration to hans.blom@scilifelab.se \n\n\n\n \n\n\n\n\n\n\n\nProgram\n\n\n\n09:00OpeningDr Hans Blom – SciLifeLab\, Campus Solna09:05Superresolution microbiology using PALMProf Ulrike Endesfelder – University of Bonn\, Germany09:50The axonal architecture at the nanoscale revealed by STORMDr Christophe Leterrier – CNRS – Aix Marseille University\, FranceCoffee break11:00Characterization of organelle dynamics with live-cell STEDDr Giovanna Coceano – SciLifeLab\, Campus Solna11:45MINFLUX in practiceDr Daniel Jans – University Medical Center Göttingen\, GermanyPhD-students/Postdocs may also sign up for one-on-one project discussions with the experts (1:45 – 3:00 pm)
URL:https://www.scilifelab.se/event/scilifelab-symposium-in-superresolution-microscopy/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Event
ORGANIZER;CN="Advanced Light Microscopy Unit":MAILTO:stewen@kth.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220929T120000
DTEND;TZID=Europe/Stockholm:20220929T130000
DTSTAMP:20260404T171109
CREATED:20220823T124133Z
LAST-MODIFIED:20220916T080422Z
UID:10000650-1664452800-1664456400@www.scilifelab.se
SUMMARY:Campus Solna Seminar Series: Koeun Shong and Hanna Van Ooijen
DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an  initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nThis week:\n\n\n\n\n\n\nKoeun Shong\n\n\n\nAdil Mardinoglu – alpha 6 \n\n\n\nNovel treatment for sarcopenia in vitro model by activating pyruvate kinase \n\n\n\n\n\nHanna Van Ooijen\n\n\n\nBjörn Önfelt – gamma 3 \n\n\n\nA thermoplastic microwell chip for 2D and 3D microscopy-based cellular assays \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page.
URL:https://www.scilifelab.se/event/campus-solna-seminar-series-sep-29/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Community
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/08/logo_PhD_Postdoc_Council.png
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220929T140000
DTEND;TZID=Europe/Stockholm:20220929T150000
DTSTAMP:20260404T171109
CREATED:20220913T160723Z
LAST-MODIFIED:20220913T161924Z
UID:10000681-1664460000-1664463600@www.scilifelab.se
SUMMARY:Context crosstalk of macrophages in cardiovascular disease
DESCRIPTION:Erik A.L. Biessen\, Maastricht University\, the Netherlands \n\n\n\n\n\n\n\n\n\n\nIn this paper\, Biessen et al. introduce a novel approach that integrates 15-plex multispectral immunofluorescent microscopy with mass spectrometry imaging to reveal murine atherosclerotic plaque myeloid heterogeneity. It maps the phenotypes’ tissue localization while allowing their further histological characterization and correlations with their cellular and molecular microenvironmental contexts. \nProf. Erik Biessen graduated in Biophysical Chemistry at Groningen University\, Netherlands (1985). He joined the Division of Biopharmaceutics of Leiden University (Prof. Dr. Th.J.C. Van Berkel) as a post-doctoral fellow and was selected for the prestigious Netherlands Heart Foundation (NHF) funded Molecular Cardiology Program to become Established Investigator in 2001. Dr. Biessen received an innovational research incentive premium of N.W.O in 2001 (VIDI/VICI precursor)\, acquired a second Established Investigatorship of the NHF in 2004\, and was appointed Professor in Therapeutic Gene Modulation at Leiden University in 2005. Since 2007 he is heading the Experimental Vascular Pathology group of CARIM (MUMC). Dr. Biessen has a part-time affiliation at the Institute for Molecular cardiovascular research of RWTH Aachen\, Germany since 2015. Dr. Biessen is/has been a board member of NHS-CVON ( 2010- 2013)\, Dutch Atherosclerosis Society (>2008)\, ZonMW TOP grant committee\, FWO Med6 Expert panel of FWO\, and Ph.D. assessment board of IWT (both Belgium). He is a scientific adviser of VantageView (St Louis\, USA)\, associate editor of Cardiovascular Research and Atherosclerosis\, and participates in several European research programs (e.g. ERA-CVD-AtheroMacHete\, 3 H2020 ITNs (Intricare\, Evolution\, CareSYAN)\, Interreg-EMR Healthy Ageing and EurLipids). Dr. Biessen aims for curiosity-driven cross-disciplinary research with an open eye for the valorization of findings. Through the years his focus has shifted from biophysical chemistry\, via medicinal chemistry and drug targeting to pathomechanistic studies of cardiovascular diseases (>2001)\, with a main emphasis on inflammation.
URL:https://www.scilifelab.se/event/context-crosstalk-of-macrophages-in-cardiovascular-disease/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Event
ORGANIZER;CN="SysMedicine":MAILTO:cheng.zhang@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220930T160000
DTEND;TZID=Europe/Stockholm:20220930T180000
DTSTAMP:20260404T171109
CREATED:20220829T074202Z
LAST-MODIFIED:20220912T073805Z
UID:10000655-1664553600-1664560800@www.scilifelab.se
SUMMARY:FAIRPoints-FAIR & Open Research 4Beginners
DESCRIPTION:Location: Online via Zoom \n\n\n\n\n\nFuture generations of scientists will benefit from early introduction of Open and FAIR principles. By providing a general understanding of sound\, open\, transparent\, and reproducible research principles and inspiring students we will gain a positive and real change in the academic culture ultimately leading to better research. \n\n\n\n\n\nIntroducing these concepts to the public can also help demystify the research process\, allay public fears about data misuse through inappropriate sharing\, and educate and inform the public about what it really means to work Openly and Reproducibly. \n\n\n\nIt can also be used to persuade the public to support ongoing efforts for Open and FAIR research in order to get the most out of taxpayer funds and garner more interest in participation in citizen science projects. \n\n\n\n \n\n\n\n\n\nWhat we want to do\n\n\n\nWe call for the inclusion of Open and FAIR principles at earlier time points e.g. in the school curriculum to young adults at school and undergraduate students. Together with Edinburgh ReproducibiliTea community we would like to develop training materials for that purpose. \n\n\n\nThe training material should encourage students to reflect on more general values such as transparency and openness in research\,  and motivate them to conduct methodologically sound research avoiding pitfalls associated with a lack of transparency and reproducibility. \n\n\n\nThis is a community led effort towards developing training material which is supported by the offer of a mentorship program provided by Open Life Science (OLS) to encourage individuals who might be interested in learning how to apply open principles in their work and in taking a leading role. \n\n\n\nHow to get involved\n\n\n\nThis is a first of a series of events designed to bring the community together to co-create material needed in different formats\, e.g. training slides\, guidebooks\, video/animations\, infographics etc… \n\n\n\nWe will facilitate the interactions via a series of community check-ins occurring between 4 to 6 weeks intervals\, we also offer biweekly co-working sessions and communications via slack for those who would like to stay in touch while working asynchronously. \n\n\n\nWe welcome all sorts of contributions e.g. input and suggestions\, reviewing\, spreading the word and advertising\, copy editing\, art work! You name it!!  \n\n\n\nJoin us at the kick-off to learn more about our plans and how you can contribute. \n\n\n\nRegister here\n\n\n\nSee event in your TimeZone \n\n\n\n\n\n\n\nAbout FAIRPoints\n\n\n\nFAIRPoints is an event series highlighting pragmatic measures developed by the community towards the implementation of the FAIR (Findable\, Accessible\, Interoperable\, Reusable) data principles\, in collaboration with GoFAIR US\, SDSC\, AGU\, and SciLifeLab Data Centre. \n\n\n\n \n\n\n\nSign up for future events here \n\n\n\nTwitter: @FAIR_Points
URL:https://www.scilifelab.se/event/fairpoints-fair-open-research-4beginners/
LOCATION:Online event via Zoom
CATEGORIES:Event
ORGANIZER;CN="SciLifeLab Data Centre":MAILTO:datacentre@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20221003T120000
DTEND;TZID=Europe/Stockholm:20221003T130000
DTSTAMP:20260404T171109
CREATED:20220919T163016Z
LAST-MODIFIED:20220919T163018Z
UID:10000684-1664798400-1664802000@www.scilifelab.se
SUMMARY:Vibrational Spectroscopy Core Facility - What’s in it for you?
DESCRIPTION:In the frame of the “SciLifeLab Site Umeå / KBC Infrastructure Seminar Series”\, the seminars will be organised every second Tuesday during autumn 2022\, in turn with IceLab Lunch Pitches. The seminars will be held in a hybrid format IRL in Glasburen\, KBC\, and online via Zoom. Take the chance to get information on facilities\, possibilities and services that infrastructure\, both SciLifeLab-associated and local\, can offer! Learn more about the seminar series and the schedule for autumn 2022 here. \n\n\n\nOn October 3rd\, 12:00-13:00\, you are welcome to participate in the seminar \n\n\n\nVibrational Spectroscopy Core Facility – What’s in it for you?\n\n\n\nby Andras Gorzsas\, ViSp facility manager and Senior research engineer at the Department of Chemistry \n\n\n\nSeminar description: The Vibrational Spectroscopy Core Facility provides in situ\, non-destructive\, label-free chemical compositional analysis in the form of FTIR and Raman spectroscopy and imaging. It is an open-access facility with many years of experience in a very broad spectrum of research areas\, from plant sciences and medicine to environmental and material sciences. \n\n\n\nJoin this lunch seminar to see some examples of what this facility can provide for your research\, ask questions and discuss possibilities. \n\n\n\nA tour to the instruments is available after the seminar for those interested. \n\n\n\nRegistration: To register your physical attendance and reserve your free sandwich\, please go to the registration Form \n\n\n\nRead more
URL:https://www.scilifelab.se/event/vibrational-spectroscopy-core-facility-whats-in-it-for-you/
LOCATION:Glasburen Seminar Room\, Chemical Biological Centre (KBC) Building\, Umeå University\, Umeå\, 901 87\, Sweden
CATEGORIES:Event
ORGANIZER;CN="SciLifeLab Ume%C3%A5":MAILTO:umea@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20221003T120000
DTEND;TZID=Europe/Stockholm:20221003T130000
DTSTAMP:20260404T171109
CREATED:20220927T093745Z
LAST-MODIFIED:20220927T102722Z
UID:10000692-1664798400-1664802000@www.scilifelab.se
SUMMARY:Meet the SciLifeLab Göteborg Site
DESCRIPTION:The SciLifeLab national site in Gothenburg\n\n\n\nMaria Smedh\, Site Coordinator\, SciLifeLab Göteborg \n\n\n\nAn overview of the national infrastructure SciLifeLab and the site in Gothenburg. \n\n\n\nSciLifeLab is a national infrastructure within life science with a wide range of advanced technology and expertise. The newly started SciLifeLab site in Gothenburg includes units at both the University of Gothenburg and Chalmers University of Technology and has a strongconnection to Sahlgrenska University Hospital. This seminar series is started with an overview of the site\, followed by presentations by the individual units. \n\n\n\nA light lunch will be offered during the talks for those joining on site. Online participation via Zoom is also available\, please click the zoom-link below to join the event at the appointed time. \n\n\n\nVenue\n\n\n\nAssembly Room Birgit Thilander\, Medicinaregatan 3
URL:https://www.scilifelab.se/event/meet-the-scilifelab-goteborg-site/
LOCATION:Birgit Thilander Lecture Hall\, Medicinaregatan 3\, Göteborg
CATEGORIES:Event
ORGANIZER;CN="SciLifeLab Gothenburg":MAILTO:gothenburg@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20221004T080000
DTEND;TZID=Europe/Stockholm:20221006T170000
DTSTAMP:20260404T171109
CREATED:20220831T141423Z
LAST-MODIFIED:20220912T074844Z
UID:10000662-1664870400-1665075600@www.scilifelab.se
SUMMARY:Swedish NMR meeting 2022
DESCRIPTION:The Swedish Nuclear Magnetic Resonance Spectroscopy (NMR) Meeting 2022 is held in Gothenburg between Oct 4 and 6\, hosted by the Swedish NMR Centre and the VR-funded SwedNMR network. \n\n\n\nRead more and register\n\n\n\nDeadlines:September 16 Registration for Poster Abstracts considered for oral presentationSeptember 28Registration for regular attendance \n\n\n\nRegistration fee and payment informationStudents & postdocs 1000 kr (1250 kr incl VAT)Academic 1500 kr (1875 kr incl VAT)Regular 2000 kr (2500 kr incl VAT)
URL:https://www.scilifelab.se/event/swedish-nmr-meeting-2022/
LOCATION:Conference Centre Wallenberg\, Medicinaregatan 20A\, Gothenburg\, 413 90\, Sweden
CATEGORIES:Event
ORGANIZER;CN="Swedish NMR Centre":MAILTO:info@nmr.gu.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20221006T120000
DTEND;TZID=Europe/Stockholm:20221006T130000
DTSTAMP:20260404T171109
CREATED:20220830T080624Z
LAST-MODIFIED:20220922T120218Z
UID:10000657-1665057600-1665061200@www.scilifelab.se
SUMMARY:Campus Solna Seminar Series: Shaghayegh Bayati and Franziska Ragaller
DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an  initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nThis week:\n\n\n\n\n\n\nShaghayegh Bayati\n\n\n\nPeter Nilsson – alpha 2 \n\n\n\nAutoantibody Profiling in Vasculitis and Systemic Sclerosis \n\n\n\n\n\nFranziska Ragaller\n\n\n\nErdinc Sezgin – gamma 3 \n\n\n\nMechanisms of environment sensitivity of smart probes for quantitative assessment of membrane properties \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page.
URL:https://www.scilifelab.se/event/campus-solna-seminar-series-oct-6/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Community
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/08/logo_PhD_Postdoc_Council.png
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20221007T090000
DTEND;TZID=Europe/Stockholm:20221007T093000
DTSTAMP:20260404T171109
CREATED:20220831T144618Z
LAST-MODIFIED:20220928T142055Z
UID:10000663-1665133200-1665135000@www.scilifelab.se
SUMMARY:[Clinical Talks] Implementing Precision Medicine from a global perspective
DESCRIPTION:Joanne M. Hackett\n\n\n\nHead of Genomic and Precision Medicine at IQVIA \n\n\n\n\n\n\n\nDr Hackett is a clinical academic\, entrepreneur\, investor\, and a strategic\, creative visionair with global experience spanning successful start-ups to Fortune 500 companies. Aside from her curious passion for life and positivity\, Joanne is known for building innovation\, driving personalised medicine and leading through fast paced\, complex changing ecosystems and integrations. Joanne’s goal is to contribute to bringing the world novel\, cost effective and simple health care solutions\, and she is particularly keen on building the case for prevention\, open science and citizen genomics. She has extensive global experience across academic\, business and clinical institutions\, and enjoys sharing her experiences with the Boards she sits on as well as companies she provides strategic advice to. \n\n\n\nJoanne has been publicly recognised for her relentless pursuit of revolutionising healthcare and has been named one of the top six Influential Leaders in Healthcare by CIO Look\, the Accenture Life Science Leader of the year\, Freshfields Top 100 Most Influential Women\, One HealthTech Top 70 Women in the NHS\, Pharmaceutical Market Europe’s 30 women leaders in UK healthcare and BioBeat Top 50 Women in Biotech Award. Joanne believes in human courage and perseverance against the odds\, and demonstrates that positive change\, whether in a company or in one’s personal life\, can be carved out from even the greatest of trials. As a believer of ‘health = wealth’\, Joanne is an internationally known yoga instructor. \n\n\n\nregister to receive zoom link\n\n\n\nModerator: Richard Rosenquist Brandell\, Genomic Medicine Sweden \n\n\n\nIQVIA Inc.\n\n\n\nIQVIA is a leading global provider of advanced analytics\, technology solutions\, and clinical research services to the life sciences industry. IQVIA creates intelligent connections across all aspects of healthcare through its analytics\, transformative technology\, big data resources and extensive domain expertise. IQVIA Connected Intelligence™ delivers powerful insights with speed and agility — enabling customers to accelerate the clinical development and commercialization of innovative medical treatments that improve healthcare outcomes for patients. With approximately 82\,000 employees\, IQVIA conducts operations in more than 100 countries. \n\n\n\nIQVIA is a global leader in protecting individual patient privacy. The company uses a wide variety of privacy-enhancing technologies and safeguards to protect individual privacy while generating and analyzing information on a scale that helps healthcare stakeholders identify disease patterns and correlate with the precise treatment path and therapy needed for better outcomes. IQVIA’s insights and execution capabilities help biotech\, medical device and pharmaceutical companies\, medical researchers\, government agencies\, payers and other healthcare stakeholders tap into a deeper understanding of diseases\, human behavior and scientific advances\, in an effort to advance their path toward cures. To learn more\, visit www.iqvia.com. \n\n\n\n \n\n\n\nClinical Talks\n\n\n\nClinical Talks is back for more! With a brand new and shiny Season 6. After successfully completing 5 seasons with > 70 enthusiastic Clinical Talkers to our record\, we have barely scratched the surface of all the amazing work our clinical\, academic and industry Life Science community has to offer. More about the upcoming events is available here. \n\n\n\nThese events are co-organized by Karolinska Institutet Innovations AB and SciLifeLab\, and brought to you by Colibri Ventures.
URL:https://www.scilifelab.se/event/clinical-talks-implementing-precision-medicine-from-a-global-perspective/
LOCATION:Online event via Zoom
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/08/Square-500x500-Clinical-Talks@4x.png
ORGANIZER;CN="Clinical Talks":MAILTO:precisionmedicine@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20221010T090000
DTEND;TZID=Europe/Stockholm:20221014T170000
DTSTAMP:20260404T171109
CREATED:20220621T081729Z
LAST-MODIFIED:20220621T081841Z
UID:10000631-1665392400-1665766800@www.scilifelab.se
SUMMARY:Python programming with applications to bioinformatics
DESCRIPTION:National course open for PhD students\, postdocs\, researchers and other employees in need of fundamental Python skills within all Swedish universities \n\n\n\nResponsible teachers: Nina Norgren\, Dimitris Bampalikis\, Jeanette Tångrot \n\n\n\nContact information: edu.intro-python@nbis.se \n\n\n\n\n\n\n\nVenue\n\n\n\nSciLifeLab Uppsala\, BMC\, Navet (Trippelrummet) \n\n\n\nUmeå University\, KBC building\, room KBG201 \n\n\n\n\n\n\n\nImportant dates\n\n\n\nApplication open: June 21 \n\n\n\nApplication deadline: September 4 \n\n\n\nConfirmation to accepted participants: September 8 \n\n\n\n\n\n\n\nCourse fee\n\n\n\n A course fee* of 2000 SEK will be invoiced to accepted participants. This includes lunches\, coffee and snacks\, and course dinner \n\n\n\n*Please note that NBIS cannot invoice individuals \n\n\n\n\n\n\n\n\n\nCourse website\n\n\n\n\n\nApplication\n\n\n\n\n\n\n\n\n\n\n\n\n\nCourse description\n\n\n\n This course provides a practical introduction to the writing of Python programs for the complete novice. Participants are led through the core aspects of Python illustrated by a series of example programs. Upon completion of the course\, attentive participants will be able to write simple Python programs from scratch and to customize more complex code to fit their needs. \n\n\n\nFormat \n\n\n\nThis course runs in parallel both on-site in Uppsala and in Umeå. Lectures will be streamed online from our Uppsala site to the Umeå site. Several teaching assistants will be present both in the Umeå and Uppsala classroom all week to help with exercises and questions. When registering you will be asked to which site you apply. \n\n\n\nThe course consists of a mix of presentations\, demonstrations\, and practical exercises (either in the lab with assistants or on your own). Prior to the course\, you can read a companion book “Programming Python”\, or “Learning Python”. Such a book will also prove useful for your programming tasks\, after the course is over. It is however not required\, and material will be presented in class. \n\n\n\n\n\n\n\nCourse content\n\n\n\nCore concepts about Python syntax: Data types\, blocks and indentation\, variable scoping\, iteration\, functions\, methods and argumentsDifferent ways to control program flow using loops and conditional testsRegular expressions and pattern matchingWriting functions and best-practice ways of making them usableReading from and writing to filesCode packaging and Python librariesHow to work with biological data using external libraries.\n\n\n\n\n\n\n\nLearning outcomes\n\n\n\nDescribe and apply basic concepts in Python\, such as:LoopsIf/else statementsFunctionsReading/writing to filesBeing able to edit and run Python codeWrite file-processing Python programs that produce output to the terminal and/or external filesCreate stand-alone python programs to process biological dataKnow how to develop your skills in Python after the course (including debugging)\n\n\n\n\n\n\n\nEntry requirements\n\n\n\n The course is suitable for complete beginners and assumes no prior programming experience (beyond the ability to use a text editor). A very basic knowledge of UNIX would be an advantage\, such as navigating through folders and issuing commands at a shell prompt. We will not teach UNIX in detail: Other courses are available at SciLifeLab for it. Make sure your laptop has python installed for the practical exercises. \n\n\n\n\n\n\n\nSelection criteria\n\n\n\nDue to limited space the course can accommodate a maximum of 25 participants in Uppsala and 15 in Umeå. If we receive more applications\, participants will be selected based on several criteria. Selection criteria include correct entry requirements\, motivation to attend the course as well as gender and geographical balance. Please note that NBIS training events do not provide any formal university credits. The training content is estimated to correspond to 1.5 hp credits\, however the estimated credits are just recommendations. If formal credits are crucial\, the student needs to confer with the home department before submitting a course application in order to establish whether the course is valid for formal credits or not
URL:https://www.scilifelab.se/event/python-programming-with-applications-to-bioinformatics/
CATEGORIES:Course
ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20221011T080000
DTEND;TZID=Europe/Stockholm:20221013T170000
DTSTAMP:20260404T171109
CREATED:20220912T161617Z
LAST-MODIFIED:20220912T161619Z
UID:10000680-1665475200-1665680400@www.scilifelab.se
SUMMARY:Cryo-EM sample preparation and data collection course
DESCRIPTION:The purpose of the course is to prepare and train Cryo-EM facility users in sample preparation methods\, introduce users to the image data acquisition workflow\, expand knowledge about cryo-EM methods among researchers and show that everyone can learn how to use cryo-EM for structure and cell biology. \n\n\n\nThe course is open for facility users or potential facility users\, such as PhD students\, postdocs\, and researchers within the life sciences who are curious and will profit from cryo-EM skills. Swedish and international course participants are welcome. To attend\, the course participants must have experience in basic electron microscopy and be familiar with structure or cell biology. \n\n\n\nThis course is supported by SciLifeLab\, CryoNET and Umeå University and organized by the SciLifeLab Cryo-EM facility\, both UmU and SU nodes together. \n\n\n\nApplication deadlineApplication should be submitted before September 16\, 2022 \n\n\n\nRead more\n\n\n\nCourse organizersCamilla Holmlund and Michael Hall \n\n\n\nLocationUCEM and Chemical Biological Centre (KBC) BuildingUmeå UniversityLinnaeus väg 6 \n\n\n\nTeachers and course instructors \n\n\n\nLinda SandbladMichael HallLars-Anders CarlsonCamilla HolmlundAdditional teachers t.b.a\n\n\n\nSocial programA social program depending on the current corona restriction will be communicated to the participants after acceptance. \n\n\n\nCourse feeA course fee of 800 SEK\, including coffee and lunches\, will be invoiced to accepted participants after acceptance. \n\n\n\nCourse contentThis course will cover practical aspects of cryo-EM sample preparation and data acquisition.Topics covered: \n\n\n\nBasic theory of vitreous water\, how to handle a cryo sample and consequencesPlunge freezing methods\, tools and cryo-transferSample and instrument requirements for single particle and tomography methodsImage data acquisition\, concept of low dose and the cryo-specific workflowIntroduction to automatic data acqui­sition software\, EPU\, TomographyIntroduction to cryo-EM image processing methods\n\n\n\nThe course consists of lectures\, cryo lab work\, demonstrations and practical exercises for all participants\, hands-on experiences of microscopy operation and discussions. A detailed schedule will be provided to accepted participant. \n\n\n\nCourse literatureHandouts and material online. \n\n\n\nEntry requirementsPriority will be given to researchers involved in project where the use of cryo-EM is needed\, which are to be briefly described upon application. \n\n\n\nThe course will be held at an advanced level\, assuming that participants have a master’s degree or equivalent in a technical life science discipline. It aims to be relevant for a broad research community\, also to participants not working in research environments using cryo-EM today. \n\n\n\nA maximum of 15 participants will be admitted. Selection criteria include correct entry requirements\, motivation to attend the course as well as gender balance. \n\n\n\nExamination Participation in all parts of the course\, lectures\, lab\, microscopy demonstrations and evaluation are mandatory. SciLifeLab and Umeå University will provide successful participants with a course certificate and a recommendation for 1 ECTS
URL:https://www.scilifelab.se/event/cryo-em-sample-preparation-and-data-collection-course/
CATEGORIES:Course
ORGANIZER;CN="SciLifeLab Ume%C3%A5":MAILTO:umea@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20221011T090000
DTEND;TZID=Europe/Stockholm:20221011T120000
DTSTAMP:20260404T171109
CREATED:20220920T161925Z
LAST-MODIFIED:20220927T123606Z
UID:10000686-1665478800-1665489600@www.scilifelab.se
SUMMARY:BioImage Analysis support – Call4Help
DESCRIPTION:Every month (mainly on Tuesdays\, but there might be exceptions) the BioImage Informatics Facility together with microscopy expert Sylvie Le Guyader (LCI\, Karolinska Institutet) organizes a Call4Help session. The aim is to offer combined expertise towards microscopy and bioimage analysis. All researchers from Swedish institutes can participate. \nThe ideal timepoint to join the Call4Help session is when a researcher has performed pilot experiments and has tried out first analysis approaches – but before having recorded hundreds of images. Combining BIIF’s expertise in BioImage Analysis with microscopy expertise we can discuss ways to record the images that allow analysis afterwards. We will discuss different analysis approaches using mainly open-source software (Fiji\, CellProfiler\, QuPath\, Ilastik\, KNIME)\, but also commercial systems\, if needed (Imaris). \nThe Call4Help session format has been introduced to the BioImage Analysis community by NEUBIAS and ScopeM. \n  \nHow to participate? \nStep1: \nPrepare a short presentation (5-7 min)  – use the following template for your presentation: \nhttp://bit.ly/BIIF_C4H_slideTemplate \nSlide template by NEUBIAS/ScopeM \nStep2: \n\na) Upload your presentation \n\n  \nUpload your presentation to a drive of your choice. You can also use our Call4Help google drive. Note that files shared on our Call4Help drive will be available to everyone until the session is over. \nhttp://bit.ly/BIIF_C4H_Drive \n\nb) Upload example images for testing. \n\nUpload example images for testing either to the drive of your choice or our Call4Help google drive above. \nhttp://bit.ly/BIIF_C4H_Drive \n\nc) Register by filling out the registration form: \n\nhttp://bit.ly/BIIF_C4H_Registration \nStep 3: \nJoin the zoom-session. \nIf your problem is selected for presentation\, you will get a time-slot of 30 – 60 minutes within the session. \n  \nWhat are the Deadlines \nSubmission of a problem and upload of example data: Friday the week before the session. \nNotification about participation: The day before the session. \nNext Call4Help session: Tuesday\, October 11\, 2022\, 9.00-12.00 \nDeadline for application: Friday\, October 7\, 2022
URL:https://www.scilifelab.se/event/bioimage-analysis-support-call4help-7/
LOCATION:Online event via Zoom
CATEGORIES:Event
ORGANIZER;CN="Bioimage Informatics Unit":MAILTO:biif@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20221011T090000
DTEND;TZID=Europe/Stockholm:20221013T170000
DTSTAMP:20260404T171109
CREATED:20220621T074909Z
LAST-MODIFIED:20220831T075512Z
UID:10000630-1665478800-1665680400@www.scilifelab.se
SUMMARY:Introduction to Data Management Practices
DESCRIPTION:National course open for PhD students\, postdocs\, researchers and other employees within all Swedish universities. This course will introduce important aspects of Research Data Management through a series of lectures and hands-on computer exercises. The course is intended for researchers that want to take the first steps towards a more systematic and reproducible approach to analysing and managing research data. \n\n\n\nNote: We follow the recommendations and guidelines from Swedish authorities and Folkhälsomyndigheten. The course is designed to be an interactive face-to-face event. However\, we follow the situation carefully and will deliver the course online if needed. \n\n\n\nContact: edu.intro-dm@nbis.se \n\n\n\n\n\n\n\nImportant dates\n\n\n\nApplication opens:  open now \n\n\n\nApplication closes:  2022-09-09 \n\n\n\nConfirmation to accepted students:  2022-09-13 \n\n\n\n\n\n\n\n\n\nCourse Website\n\n\n\n\n\nApplication\n\n\n\n\n\n\n\n\n\n\n\n\n\nCourse fee\n\n\n\n1500 SEK paid by invoice to NBIS. This includes lunches\, coffee and snacks. Please note that NBIS cannot invoice individuals. \n\n\n\nDue to limited space the course can accommodate a maximum of 25 participants. If we receive more applications\, participants will be selected based on several criteria. Selection criteria include correct entry requirements\, motivation to attend the course as well as gender and geographical balance. \n\n\n\n\n\n\n\nCourse content\n\n\n\nTopics covered will include \n\n\n\n• Open Science and FAIR in practice \n\n\n\n• Organising data\, files and folders in research projects \n\n\n\n• Versioning data\, documents and scripts with Git \n\n\n\n• Describing data with metadata \n\n\n\n• Cleaning tabular data and metadata with OpenRefine \n\n\n\n• Submitting data to public data repositories \n\n\n\n• Writing basic recipes for data analysis and visualisation with R \n\n\n\n\n\n\n\nLearning objectives \n\n\n\n• To get acquainted with\, and reflect upon\, the principles of Open Science and FAIR \n\n\n\n• To understand the importance of metadata\, and how it affects “FAIRness” \n\n\n\n• To learn how to organise files to make project work more efficient \n\n\n\n• To learn to clean up messy tabular data and metadata \n\n\n\n• To learn how to find\, and submit to\, relevant public repositories for data publication \n\n\n\n• To learn to apply simple version control practices on files \n\n\n\n• To learn to start using R to analyse data \n\n\n\n\n\n\n\nEntry requirements\n\n\n\nNo previous programming experience is required but you are required to bring your own laptop with the required software pre-installed. Installation instructions will be provided before the course starts.
URL:https://www.scilifelab.se/event/introduction-to-data-management-practices-3/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Course
ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20221011T120000
DTEND;TZID=Europe/Stockholm:20221011T130000
DTSTAMP:20260404T171109
CREATED:20220927T104040Z
LAST-MODIFIED:20220927T104229Z
UID:10000693-1665489600-1665493200@www.scilifelab.se
SUMMARY:Clinical Genomics Gothenburg - Infrastructure and Research services
DESCRIPTION:Clinical Genomics Gothenburg – Infrastructure and Research services\n\n\n\nMeena Kanduri\, Clinical Genomics\, SciLifeLab Göteborg \n\n\n\nJoin us to learn more about the NGS-based services and the bioinformatic support that we offer at Clinical Genomics Gothenburg (CGG) unit with a focus towards translational and clinical research. \n\n\n\nSciLifeLab is a national infrastructure within life science with a wide range of advanced technology and expertise. The newly started SciLifeLab site in Gothenburg includes units at both the University of Gothenburg and Chalmers University of Technology and has a strongconnection to Sahlgrenska University Hospital. This seminar series is started with an overview of the site\, followed by presentations by the individual units. \n\n\n\nA light lunch will be offered during the talks for those joining on site. Online participation via Zoom is also available\, please click the zoom-link below to join the event at the appointed time. \n\n\n\nVenue\n\n\n\nAssembly Room Birgit Thilander\, Medicinaregatan 3
URL:https://www.scilifelab.se/event/clinical-genomics-gothenburg-infrastructure-and-research-services/
LOCATION:Birgit Thilander Lecture Hall\, Medicinaregatan 3\, Göteborg
CATEGORIES:Event
ORGANIZER;CN="SciLifeLab Gothenburg":MAILTO:gothenburg@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20221013T120000
DTEND;TZID=Europe/Stockholm:20221013T130000
DTSTAMP:20260404T171109
CREATED:20220830T080828Z
LAST-MODIFIED:20220927T110646Z
UID:10000658-1665662400-1665666000@www.scilifelab.se
SUMMARY:Campus Solna Seminar Series: Aditi Shenoy and Jean Froment
DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an  initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nThis week:\n\n\n\n\n\n\nAditi Shenoy\n\n\n\nArne Elofsson – alpha 6 \n\n\n\nEvaluation of AlphaFold-Multimer predictions – edge cases and exploring its utility for binding-site prediction \n\n\n\n\n\nJean Froment\n\n\n\nJonathan Martin – gamma 5 \n\n\n\nWhy is the air toxic? Virtual effects-directed analysis (vEDA) of fine particulate matter (PM2.5) \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page.
URL:https://www.scilifelab.se/event/campus-solna-seminar-series-oct-13/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Community
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/08/logo_PhD_Postdoc_Council.png
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20221013T150000
DTEND;TZID=Europe/Stockholm:20221013T160000
DTSTAMP:20260404T171109
CREATED:20221005T141602Z
LAST-MODIFIED:20221005T141605Z
UID:10000708-1665673200-1665676800@www.scilifelab.se
SUMMARY:Structural proteogenomics analyses of circulating antibody repertoires
DESCRIPTION:We showcase a novel structural proteogenomics workflow to decipher the properties of circulating antibody repertories relating to immunity against bacteria and viruses. \n\n\n\nProf. Johan Malmström\, Lund University \n\n\n\nOctober 13th\, 15:00-16:00 SciLifeLab Gamma-2 lunchroom
URL:https://www.scilifelab.se/event/structural-proteogenomics-analyses-of-circulating-antibody-repertoires/
LOCATION:Gamma 2 Lunchroom\, SciLifeLab\, Tomtebodavägen 23\, Solna\, Sweden
CATEGORIES:Event
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END:VCALENDAR