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DTSTART;TZID=Europe/Stockholm:20221111T090000
DTEND;TZID=Europe/Stockholm:20221111T093000
DTSTAMP:20260404T153747
CREATED:20220923T085744Z
LAST-MODIFIED:20220928T154812Z
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SUMMARY:[Clinical Talks] Combining AI and in situ sequencing to explore the tumor micro-environment
DESCRIPTION:Carolina Wählby\n\n\n\nProfessor in quantitative microscopy\, SciLifeLab and Dept. IT\, Uppsala University \n\n\n\n\n\n\n\nCarolina Wählby is professor in Quantitative Microscopy at the Dept. of Information Technology\, Uppsala University\, and Scientific Director of the National SciLifeLab Bioimage Informatics Unit. Her research is focused on developing computational approaches for extracting information from image data with focus on precision medicine and life science. Methods include traditional image analysis as well as AI and deep learning for understanding dynamics of cancer tissue\, antibiotics susceptibility and spatial transcriptomics\, funded primarily by the ERC TissUUmaps project and the Swedish Foundation for Strategic research. She received the SBI2 President’s innovation award in 2014 for her work on in situ sequencing\, and the Thuréus prize in 2015 for development of open tools for image analysis. She is a member of the Royal Society of Sciences at Uppsala and the Royal Swedish Academy of Engineering Sciences. She has a MSc in molecular biotechnology and a PhD in digital image analysis\, and carried out postdoc research within genetics and pathology. She was part of the Imaging Platform of the Broad Institute of Harvard and MIT in 2009-2015 and became full professor at Uppsala University in 2014. She is a member of the steering group of a 300M€ effort on Data Driven Life Science\, funded by the Knut and Alice Wallenberg Foundation\, with the ambitious goal of training the next generation of life scientists. Her heart lies in the intersection between life science and computational image analysis\, and she is intrigued by the possibilities of technological developments and convergence of the scientific fields. \n\n\n\nregister to receive zoom link\n\n\n\nModerator: Päivi Östling\, SciLifeLab \n\n\n\n\n\n\n\n \n\n\n\nClinical Talks\n\n\n\nClinical Talks is back for more! With a brand new and shiny Season 6. After successfully completing 5 seasons with > 70 enthusiastic Clinical Talkers to our record\, we have barely scratched the surface of all the amazing work our clinical\, academic and industry Life Science community has to offer. More about the upcoming events is available here. \n\n\n\nThese events are co-organized by Karolinska Institutet Innovations AB and SciLifeLab\, and brought to you by Colibri Ventures.
URL:https://www.scilifelab.se/event/clinical-talks-combining-ai-and-in-situ-sequencing-to-explore-the-tumor-micro-environment/
LOCATION:Online event via Zoom
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/08/Square-500x500-Clinical-Talks@4x.png
ORGANIZER;CN="Clinical Talks":MAILTO:precisionmedicine@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20221114T080000
DTEND;TZID=Europe/Stockholm:20221118T170000
DTSTAMP:20260404T153747
CREATED:20221031T165001Z
LAST-MODIFIED:20221031T165003Z
UID:10000725-1668412800-1668790800@www.scilifelab.se
SUMMARY:TEM sample preparation practical course part II
DESCRIPTION:TEM sample preparation course – Chemical fixation\, high pressure freezing\, plastic embedding and staining methods including practice on ultra-microtome sectioning\, TEM imaging and an introduction to CLEM (Correlative Light and Electron Microscopy)\, FIB-SEM (Focused Ion Beam) and electron tomography. \n\n\n\nRead more\n\n\n\nPre-requisite criterion: Basic EM course at UCEM or equal previous experiences of EM methods. \n\n\n\nParticipants will practice EM sample preparation and EM imaging with one sample from their own project. Our lab space limits the number of participants to 8 so we will select participants based on your motivation and how your project aims fits to the course content. Please write a short project description\, a motivation for participating and what sample you would like to process during the course. \n\n\n\nPlease\, look at the program and the methods that are covered in this course. Make sure you have time to participate full days and the entire week. Since the fixation and plastic embedding takes time\, you should bring one test-sample to Agnieszka on Monday 7 of November\, and a new test-sample on the first course day\, 14 November. \n\n\n\nPreliminary Program:The course preliminary program will be announced here once it is organised. \n\n\n\nLocation:Lectures at KBC and laboratory demonstrations at UCEM – Level 5\, 6 + new EM building (Level 1)\, Umeå University. \n\n\n\nParticipants:8 persons. Open to all research students\, postdocs and staff. \n\n\n\nInstructors: \n\n\n\nSara Henriksson – EM research engineerGayathri Vegesna – EM research engineerAgnieszka Ziolkowska – EM research engineerCamilla Holmlund – EM research engineerLinda Sandblad – EM facility director\n\n\n\nDuration:5 days \n\n\n\nBreaks/Refreshments:Coffee\, cookies and fruit will be served. \n\n\n\nCosts:No course fee\, but full attendance is required! \n\n\n\nCredits:Students that attend all theoretical and practical parts of the course\, will receive a certificate for 1\,5 hp.
URL:https://www.scilifelab.se/event/tem-sample-preparation-practical-course-part-ii/
LOCATION:Kemiskt Biologiskt Centrum\, Umeå University\, Linnaeus väg 6\, Umeå\, 90736
CATEGORIES:Course
ORGANIZER;CN="SciLifeLab Ume%C3%A5":MAILTO:umea@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20221114T130000
DTEND;TZID=Europe/Stockholm:20221114T150000
DTSTAMP:20260404T153747
CREATED:20220622T114437Z
LAST-MODIFIED:20220622T114554Z
UID:10000636-1668430800-1668438000@www.scilifelab.se
SUMMARY:Spatial and Single Cell Biology Webinar
DESCRIPTION:The Spatial and Single Cell Biology Platform at SciLifeLab invites you to a virtual event where you can learn about the service we provide within the field of spatial and single cell omics. Take the opportunity to learn about cutting edge methods including spatial transcriptomics with Visium\, in situ sequencing\, spatial proteomics using highly multiplexed imaging\, spatial metabolomics with MALDI imaging and advanced FISH technologies. The presentations will be given by our experts in there respective methods\, working within the platform.  \n\n\n\nThe event is open for anyone to attend\, who are interested in including spatial omics in their research projects or with a general interest to learn about the methods. \n\n\n\nregister here
URL:https://www.scilifelab.se/event/spatial-and-single-cell-biology-webinar-2/
LOCATION:Online event via Zoom
CATEGORIES:Event
ORGANIZER;CN="Spatial and Single Cell Biology Platform":MAILTO:charlotte.stadler@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20221115T123000
DTEND;TZID=Europe/Stockholm:20221116T123000
DTSTAMP:20260404T153747
CREATED:20220630T233736Z
LAST-MODIFIED:20221113T083931Z
UID:10000640-1668515400-1668601800@www.scilifelab.se
SUMMARY:DDLS Annual Conference
DESCRIPTION:Welcome to a lunch-to-lunch conference focused on Data-driven Life Science. Listen to the DDLS Fellows and take part in social activities onsite.  \n\n\n\nThe Data-Driven Life Science conference on November 15-16\, 2022\, is the first in-person conference of the DDLS program. This meeting brings together the community in biomolecular data science and AI\, introduces newly appointed DDLS fellows\, and provides opportunities for networking across the research community and SciLifeLab infrastructures. We are excited to host two international keynote speakers and welcome the community to join us. We are excited to meet in person at the poster session and other social events. \n\n\n\n \n\n\n\nDDLS Annual Conference Poster session\n\n\n\nLightning talk and Poster session \n\n\n\nThe lightning talk is 1 minute and will be strictly timed. No slides. Please\, indicate in the registration if you like to present a poster with\, or without\, a 1 min lightning talk. \n\n\n\nDDLS Annual Conference Best Poster Award \n\n\n\nThe DDLS Annual Conference Best Poster Award encourages the submission and exhibition of high-quality posters carried out by young scientists\, including Ph.D. students\, post-doctoral researchers\, etc. The poster should be on a topic related to data-driven life science. The Prize\, which is based upon the decision of a Scientific Committee-appointed Jury\, consists of a certificate and a travel grant of up to 5 000 SEK. The travel must be booked and ordered through the DDLS Support team and follow regular University travel policy. The trip should be completed before 2023-12-31. \n\n\n\n\n\n\n\nTarget group: We welcome all researchers interested in the DDLS program and data-driven life science. \n\n\n\nParticipants onsite: Venue Eva & Georg Klein\, Floor 3 (ground floor)\, Biomedicum\, Stockholm \n\n\n\nParticipate online: Online participation info\, e.g\, zoom link will be sent out upon registration \n\n\n\nOrganizer: SciLifeLab\, host of SciLifeLab & Wallenberg National Program for Data-Driven Life Science. \n\n\n\n\n\n\n\nRegister here\n\n\n\nOnsite: Register before November 9 at 12:00\, so we can order coffee and lunch. \n\n\n\n\n\n\n\n\nDownload Flyer\n\n\n\n\n\n\n\n\n\nDownload Program\n\n\n\n\n\n\n\n\nAgenda\n\n\n\nTuesday\, November 1511:45Drop-in Registration with Coffee and WrapsArea: Social area directly to the right of the entrance. You can leave your coat and bag in the Lecture Hall. We ask the participants to be seated at 12:30.12:30WelcomeTuuli Lappalainen\, KTH/SciLifeLabDDLS updatesOlli Kallioniemi\, SciLifeLab13:00Keynote: Samuli Ripatti\, Institute for Molecular Medicine\, University of HelsinkiGenetic variation and risk of common diseases over the life course13:45Coffee break14:15DDLS Fellow Talk: Tom van der Valk\, Museum of Natural HistoryEnvironmental DNA in the genomic decade14:35Infrastructures for data-driven life scienceJohan Rung\, SciLifeLab Data CentreSciLifeLab Data Centre14:45Ola Spjuth\, SciLifeLab Data CentreManaging the life cycle of AI models and apps15:00Matts Karlsson\, Linköping UniversityNAIS\, Berzelius and the road ahead15:15Poster lightning talks (1 minute per poster)Poster session with snacks and beverage17:30End of Day 1Wednesday\, November 1609:00Keynote: Cecilia Clementi\, Freie Universität BerlinDesigning molecular models with machine learning and experimental data09:45DDLS Fellow Talk: Johan Bengtsson-Palme\, Chalmers University of TechnologyUnderstanding the Evolution of Pathogenicity: Predicting and Preventing the Disease Threats of the Future10:05Announcement of DDLS Annual Conference Best Poster Award10:15Coffee break10:45DDLS Fellow Talk: Tobias Andermann\, Uppsala UniversityBig data approaches for assessing biodiversity value and potential11:05DDLS Fellow Talk: Fredrik Edfors\, Royal Institute of Technology\, KTHHarnessing the promise of next-generation plasma profiling for pan-cancer diagnostics11:25DDLS Fellow Talk: Clemens Wittenbecher\, Chalmers University of TechnologyMetabolomics profiling generates candidate biomarkers for precision nutrition approaches11:45Panel discussion: Training in Data Driven Life ScienceChair: Carolina Wählby\, Uppsala UniversityPanelists: Leslie Solorzano Vargas\, postdoc at KINina Norgren\, coordinator for DDLS education and training\, Umeå UniversityKrzysztof Jurdzinski\, PhD student at KTHDaniel Gedon\, PhD student at UU12:30Joint conference lunchProgram updated 2022-11-12\n\n\n\n\n\n\n\nAbstract\n\n\n\nCecilia Clemens\nDesigning molecular models with machine learning and experimental data. Cecilia Clemens. \n\n\n\nThe last years have seen an immense increase in high-throughput and high-resolution technologies for experimental observation as well as high-performance techniques to simulate molecular systems at a microscopic level\, resulting in vast and ever-increasing amounts of high-dimensional data. However\, experiments provide only a partial view of the molecular processes and are limited in their temporal and spatial resolution. On the other hand\, simulations are still not able to completely characterize large and/or complex molecular processes over long timescales\, thus leaving significant gaps in our ability to study these processes at a physically relevant scale. We present our efforts to bridge these gaps\, by combining statistical physics with state-of-the-art machine-learning methods to design optimal coarse models for complex macromolecular systems. We derive simplified molecular models to reproduce the essential information contained both in microscopic simulation and experimental measurements. \n\n\n\n\nSamuli Ripatti\nGenetic variation and risk of common diseases over the life course. Samuli Ripatti. \n\n\n\nPast 15 years have seen tremendous success in identifying genetic loci associated with common diseases and traits. Much of the current activities focus on strategies for inferring causal variants and genes driving these associations and on the potential translational opportunities arising from the genetic discoveries. I will highlight some of the opportunities\, risks and gaps in our knowledge related to both causal inference and genetic prediction and translation.  I will provide examples from FinnGen study (www.finngen.fi) consisting of genome wide profiles and longitudinal health registry data for  half a million Finns and from a network on biobanks and machine learning/AI -methods developers in INTERVENE Consortium (https://www.interveneproject.eu). \n\n\n\n\nJohan Bengtsson-Palme\nPredicting the disease threats of the future. Johan Bengtsson-Palme \n\n\n\nOur inability to restrain covid-19 to remain a local disease outbreak highlighted an important vulnerability in our preparedness for new infectious diseases – our inability to predict what the future disease agents might look like. This inability makes it impossible to preemptively monitor for potential future pathogens and makes it harder to quickly adapt existing disease surveillance to novel outbreaks. There is no guarantee that the next major outbreak will be viral – with increasing antibiotic resistance\, multidrug-resistant bacteria may very well be the next pandemic. In this talk\, I will discuss how we can predict which genes to look for to find future pathogens before they become widespread in clinics or among the general population\, both in terms of genes responsible for pathogenicity and in terms of antibiotic resistance genes. I will also outline how surveillance for antimicrobial resistance could be adapted to also include markers for pathogenicity and thus allow us to prevent or constrain disease outbreaks early. \n\n\n\n\nFredrik Edfors\nHarnessing the promise of next-generation plasma profiling for pan-cancer diagnostics. Fredrik Edfors \n\n\n\nCancer is one of our biggest worldwide health problems\, causing almost 10 million deaths annually. Despite significant advancements in cancer therapy over the past three decades\, diagnosis and treatment still have a great deal of opportunity for improvement.  \n\n\n\nHere\, a total of 12 prevalent cancer types represented by more than 1\,400 cancer patients’ plasma profiles of 1\,463 proteins were evaluated in trace amounts of blood plasma taken at the time of diagnosis and prior to treatment. A group of proteins linked to each of the examined malignancies was found using ML-based disease prediction models. This precision medicine strategy has the potential to benefit from advances in proteomics and precision and personalized medicine. \n\n\n\n\nTobias Andermann\nBig data approaches for assessing biodiversity value and potential. Tobias Andermann \n\n\n\nOur human societies worldwide are having a profound negative impact on the natural world surrounding us\, leading to experts declaring the current biodiversity crisis. However\, to date it is difficult if not impossible to actually quantify the magnitude of our impact on biodiversity. This is largely due to the overwhelming complexity of biodiversity\, which is not easily summarized and reduced into manageable metrics. Yet\, solving this task is necessary and is arguably one of the biggest and most urgent contemporary challenges for the biological research community. In this talk I will discuss the utility of environmental DNA (eDNA) sequencing as a tool for gathering comprehensive biodiversity data in the field. I will touch upon the challenges and possibilities regarding the application of eDNA data for this purpose\, in particular how these data can be applied to train AI models with the ability to model biodiversity and simulate changes thereof. \n\n\n\n\n \n\n\n\n\n\n\n\nScientific Committee\n\n\n\nTuuli Lappalainen\, chair and DDLS Steering group member\, Clemens Wittenbecher\, DDLS Fellow\, Simon Olsson\, WASP and Johan Rung\, Data Centre.  \n\n\n\nOrganizing Committee\n\n\n\nProject leader Erika Erkstam\, Operations office\, and the DDLS support team Heidi T Persson\, Ulrika Wallenquist\, Titti Ekegren.
URL:https://www.scilifelab.se/event/ddls-annual-conference/
LOCATION:Eva & Georg Klein\, Solnavägen 9\, Stockholm\, 17165\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/09/DDLS_cropped-Liten.jpeg
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20221115T130000
DTEND;TZID=Europe/Stockholm:20221115T140000
DTSTAMP:20260404T153747
CREATED:20221111T094600Z
LAST-MODIFIED:20221115T081948Z
UID:10000730-1668517200-1668520800@www.scilifelab.se
SUMMARY:BAM Seminar: Grant opportunities for PhDs and Postdocs 
DESCRIPTION:As part of our “Biology At Most” seminar series we invite speakers from all types of life science career paths. They will share their visions\, perspectives and expertise in their field in a informal environment. \n\n\n\nToday’s Guests\n\n\n\nRepresentatives of the scholarship offices from Stockholm University\, Kungliga Tekniska Högskolan and Karolinska Institutet: Carina Lindblad (SU)\, Veronica Haegeland (KTH) and Daniela Strodthoff (KI)  \n\n\n\n\n\n\n\nThese speakers will inform us about the grant opportunities available from our three universities for researchers at the PhD or Postdoc level. As researchers in academia we all rely on grants to carry out our research or to attend workshops and conferences.  The seminar will cover topics and discussions that will be helpful for PhD students and Postdocs to further their research interests and consider new avenues to expand into high quality research ideas.  \n\n\n\nThis event is mainly aimed at PhD students and Postdocs\, but researchers in all stages of their career are of course welcome to attend.  \n\n\n\nYou can join the meeting in person or via zoom (Meeting ID: 651 4642 5776). \n\n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page.
URL:https://www.scilifelab.se/event/bam-seminar-grant-opportunities/
LOCATION:Gamma 2 Lunchroom\, SciLifeLab\, Tomtebodavägen 23\, Solna\, Sweden
CATEGORIES:Community
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/11/BAM.jpg
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20221117T120000
DTEND;TZID=Europe/Stockholm:20221117T130000
DTSTAMP:20260404T153747
CREATED:20220912T094042Z
LAST-MODIFIED:20221107T170628Z
UID:10000675-1668686400-1668690000@www.scilifelab.se
SUMMARY:Campus Solna Seminar Series: Petra Marttila and Sammy Park
DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an  initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nThis week:\n\n\n\n\n\n\nPetra Marttila\n\n\n\nThomas Helleday – alpha 5 \n\n\n\nTargeting one-carbon metabolism in cancer – a journey of curiosity and collaboration to uncover a detailed mechanism of action of small-molecule MTHFD1/2 inhibitors. \n\n\n\n\n\nSammy Park\n\n\n\nOlli Kallioniemi – alpha 4 \n\n\n\nPre-clinical assessment of radiopharmaceutical therapy in paediatric high-risk neuroblastoma. \n\n\n\n\n\n\nThis seminar series is organised by the PhD & Postdoc Council. For more information about the Council and other events check our page.
URL:https://www.scilifelab.se/event/campus-solna-seminar-series-nov-17/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Community
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/09/IMG_20221103_120135408_HDR-scaled.jpg
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20221118T140000
DTEND;TZID=Europe/Stockholm:20221118T150000
DTSTAMP:20260404T153747
CREATED:20221108T134752Z
LAST-MODIFIED:20221110T155858Z
UID:10000728-1668780000-1668783600@www.scilifelab.se
SUMMARY:Comprehensive genomic profiling in routine cancer care - experiences from Uppsala
DESCRIPTION:This webinar is jointly organized by the Clinical Genomics platform and Genomic Medicine Sweden and will focus on comprehensive genomic profiling of solid tumors in routine cancer care. Clinical\, laboratory and bioinformatic aspects will be covered. \n\n\n\nSpeakers \n\n\n\nJohan Botling\, Assoc Professor of Pathology\, Senior Consultant Histopathologist \n\n\n\nGilbert Lauter\, PhD\, molecular biologist \n\n\n\nJonas Almlöf\, PhD\, bioinformatician \n\n\n\nWhen: Friday November 18\, at 14.00-15.00 \n\n\n\nWhere: Zoom videoconference. Register to receive Zoom link. \n\n\n\nHost: Malin Melin\, Head of CG Uppsala \n\n\n\nIf you have questions about the webinar\, you are welcome to contact Eva Berglund (eva.berglund@scilifelab.uu.se) or Malin Melin (malin.melin@scilifelab.uu.se). \n\n\n\n \n\n\n\nregistration
URL:https://www.scilifelab.se/event/comprehensive-genomic-profiling-in-routine-cancer-care-experiences-from-uppsala/
LOCATION:Online event via Zoom
CATEGORIES:Event
ORGANIZER;CN="Clinical Genomics Platform":MAILTO:marcela.davila@gu.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20221121T090000
DTEND;TZID=Europe/Stockholm:20221125T153000
DTSTAMP:20260404T153747
CREATED:20220906T074137Z
LAST-MODIFIED:20220907T061609Z
UID:10000670-1669021200-1669390200@www.scilifelab.se
SUMMARY:NBIS/ELIXIR-SE Tools for Reproducible Research - ONLINE
DESCRIPTION:NBIS / ELIXIR-SE course is open for PhD students\, postdocs\, group leaders and core facility staff interested in making their computational analysis more reproducible. International applications are welcome\, but we will give approximately half of the participant slots to applicants from Swedish universities at minimum\, due to the national role NBIS plays in Sweden. \n\n\n\nThe course is organized by NBIS (ELIXIR-SE). \n\n\n\nResponsible teachers: John Sundh\, Erik Fasterius \n\n\n\nContact information: edu.trr@nbis.se \n\n\n\n\n\n\n\n\n\nApply here\n\n\n\n\n\nCourse webpage\n\n\n\n\n\n\n\nImportant dates\n\n\n\nApplication open: Sep 5\, 2022 \n\n\n\nApplication deadline: Oct 21\, 2022 \n\n\n\nConfirmation to accepted participants: Oct 28\, 2022 \n\n\n\n\n\n\n\nCourse fee\n\n\n\nThis online training event has no fee. However\, if you accept a position at the workshop and do not participate (no-show) you will be invoiced 2\,000 SEK. \n\n\n\n*Please note that NBIS cannot invoice individuals \n\n\n\n\n\n\n\nCourse description\n\n\n\nOne of the key principles of proper scientific procedure is the act of repeating an experiment or analysis and being able to reach similar conclusions. Published research based on computational analysis\, e.g. bioinformatics or computational biology\, have often suffered from incomplete method descriptions (e.g. list of used software versions); unavailable raw data; and incomplete\, undocumented and/or unavailable code. This essentially prevents any possibility of attempting to reproduce the results of such studies. The term “reproducible research” has been used to describe the idea that a scientific publication based on computational analysis should be distributed along with all the raw data and metadata used in the study\, all the code and/or computational notebooks needed to produce results from the raw data\, and the computational environment or a complete description thereof. \n\n\n\nReproducible research not only leads to proper scientific conduct but also provides other researchers the access to build upon previous work. Most importantly\, the person setting up a reproducible research project will quickly realize the immediate personal benefits: an organized and structured way of working. The person that most often has to reproduce your own analysis is your future self! \n\n\n\n\n\n\n\nCourse content\n\n\n\nTopics covered \n\n\n\nGood practices for data analysisVersion control and collaborative code developmentPackage and environment managementWorkflow managementDocumentation and reportingContainerized computational environments\n\n\n\n\n\n\n\nLearning outcomes \n\n\n\nBy the end of the course the student will be able to: \n\n\n\nOrganize and structure computational projectsTrack changes and collaborate on code using GitInstall packages and manage software environments using CondaStructure computational steps into workflows with Snakemake and NextflowCreate automated reports and document their analyses with RMarkdown and JupyterPackage and distribute computational environments using Docker and Singularity\n\n\n\n\n\n\n\nEntry requirements\n\n\n\nRequired for being able to follow the course and to complete computer exercises: \n\n\n\nFamiliarity with using the terminal (e.g. be familiar with commands such as ls\, cd\, touch\, mkdir\, pwd\, wget\, man\, etc.)A computer with a webcamYou will be asked to install the video conferencing software zoom (https://zoom.us/) to be able to participate in the courseSome knowledge in R and/or python is beneficial but not strictly required\n\n\n\n\n\n\n\nSelection criteria\n\n\n\nThe course can accommodate 20 participants. Selection criteria include correct entry requirements\, motivation to attend the course as well as gender and geographical balance. Academic affiliated registrants are prioritized prior to participants from the industry.  \n\n\n\nPlease note that NBIS training events do not provide any formal university credits. The training content is estimated to correspond to a certain number of credits\, however the estimated credits are just guidelines. If formal credits are crucial\, the student needs to confer with the home department before submitting a course application in order to establish whether the course is valid for formal credits or not.
URL:https://www.scilifelab.se/event/nbis-elixir-se-tools-for-reproducible-research-online-2/
LOCATION:Online event via Zoom
CATEGORIES:Course
ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20221121T120000
DTEND;TZID=Europe/Stockholm:20221121T130000
DTSTAMP:20260404T153747
CREATED:20220927T104726Z
LAST-MODIFIED:20220927T104815Z
UID:10000697-1669032000-1669035600@www.scilifelab.se
SUMMARY:Glycoproteomics - How to analyze the importance of protein glycosylation
DESCRIPTION:Glycoproteomics – How to analyze the importance of protein glycosylation\n\n\n\nCarina Sihlbom \n\n\n\nChanges in the glycosylation of proteins is one of the first signs of a disease\, and advanced mass spectrometry is central for the study of such protein structure. \n\n\n\nSciLifeLab is a national infrastructure within life science with a wide range of advanced technology and expertise. The newly started SciLifeLab site in Gothenburg includes units at both the University of Gothenburg and Chalmers University of Technology and has a strong connection to Sahlgrenska University Hospital. \n\n\n\nA light lunch will be offered during the talks for those joining on site. Online participation via Zoom is also available\, please click the zoom-link below to join the event at the appointed time. \n\n\n\nVenue\n\n\n\nAssembly Room Birgit Thilander\, Medicinaregatan 3
URL:https://www.scilifelab.se/event/glycoproteomics-how-to-analyze-the-importance-of-protein-glycosylation/
LOCATION:Birgit Thilander Lecture Hall\, Medicinaregatan 3\, Göteborg
CATEGORIES:Event
ORGANIZER;CN="SciLifeLab Gothenburg":MAILTO:gothenburg@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20221122T120000
DTEND;TZID=Europe/Stockholm:20221122T130000
DTSTAMP:20260404T153747
CREATED:20221116T135205Z
LAST-MODIFIED:20221116T135206Z
UID:10000731-1669118400-1669122000@www.scilifelab.se
SUMMARY:National support with superresolution light microscopy
DESCRIPTION:In the frame of the “SciLifeLab Site Umeå / KBC Infrastructure Seminar Series”\, the seminars will be organised every second Tuesday during autumn 2022\, in turn with IceLab Lunch Pitches. The seminars will be held in a hybrid format IRL in Glasburen\, KBC\, and online via Zoom. Take the chance to get information on facilities\, possibilities and services that infrastructure\, both SciLifeLab-associated and local\, can offer! Learn more about the seminar series and the schedule for autumn 2022 here. \n\n\n\nOn November 22nd\, 12:00-13:00\, you are welcome to participate in the seminar \n\n\n\nNational support with superresolution light microscopy \n\n\n\nby Hans Blom\, Royal Institute of Technology (KTH)\, Head of the Advanced Light Microscopy (ALM) Unit\, SciLifeLab \n\n\n\n\nMore information about the national SciLifeLab facility Integrated Microscopy Technologies.\n\n\n\nAbout Hans Blom \n\n\n\n\nregistration\n\n\n\nRegistration deadline: Monday\, November 21st\, 10:00. \n\n\n\nOnline attendance: You can also join the seminar on Zoom\, https://umu.zoom.us/j/63138997026 \n\n\n\nOrganisers: SciLifeLab Site Umeå and Chemical Biological Centre (KBC)
URL:https://www.scilifelab.se/event/national-support-with-superresolution-light-microscopy/
LOCATION:Glasburen Seminar Room\, Chemical Biological Centre (KBC) Building\, Umeå University\, Umeå\, 901 87\, Sweden
CATEGORIES:Event
ORGANIZER;CN="SciLifeLab Ume%C3%A5":MAILTO:umea@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20221124T080000
DTEND;TZID=Europe/Stockholm:20221125T170000
DTSTAMP:20260404T153747
CREATED:20221020T085403Z
LAST-MODIFIED:20221020T085458Z
UID:10000718-1669276800-1669395600@www.scilifelab.se
SUMMARY:Aquatic Microbiome Research Initiative -All-Hands meeting
DESCRIPTION:This year’s AMRI All-Hands meeting will feature speakers from EMBL\, Centro Nacional de Biotecnología\, Umeå University\, and the LEAF sustainable lab program. \n\n\n\nRead more and register\n\n\n\nThe evening of the 24th we will welcome all AMRI participants on an excursion to the Baltic Sea Science Centre\, followed by a dinner. \n\n\n\n**A dinner for postdocs and early career researchers is scheduled for the evening of November 23rd\, to be followed by a morning workshop designed for postdocs and early careers on November 24th. \n\n\n\nAMRI covers the cost of travel and accommodations for those traveling from outside the Stockholm/Uppsala area.
URL:https://www.scilifelab.se/event/aquatic-microbiome-research-initiative-all-hands-meeting/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/10/Skärmavbild-2022-10-20-kl.-10.53.45.png
ORGANIZER;CN="Aquatic Microbiome Research Initiative":MAILTO:caroline.littlefield@ebc.uu.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20221124T090000
DTEND;TZID=Europe/Stockholm:20221124T170000
DTSTAMP:20260404T153747
CREATED:20221019T130435Z
LAST-MODIFIED:20221117T161827Z
UID:10000715-1669280400-1669309200@www.scilifelab.se
SUMMARY:SciLifeLab Platform Day - Uppsala site
DESCRIPTION:This day will be held to promote and introduce an array of SciLifeLab infrastructure platforms based in Uppsala. \nVenue: Trippelrummet\, and on ZoomTime: 9:00-17:00 \n\n\nREGISTER HERE\n\n\n\nSEE THE PROGRAM HERE
URL:https://www.scilifelab.se/event/scilifelab-platform-day/
LOCATION:Navet\, SciLifeLab Uppsala\, SciLifeLab Uppsala\, BMC C11\, Husargatan 3\, Uppsala\, 75237\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2020/05/mötestorget-1-scaled.jpg
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20221124T120000
DTEND;TZID=Europe/Stockholm:20221124T130000
DTSTAMP:20260404T153747
CREATED:20220912T094631Z
LAST-MODIFIED:20221117T075835Z
UID:10000677-1669291200-1669294800@www.scilifelab.se
SUMMARY:Campus Solna Seminar Series: Charlotte Stadler and Linnea Påvenius
DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an  initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nThis week:\n\n\n\n\n\n\nCharlotte Stadler\n\n\n\nSpatial Proteomics – alpha 2 \n\n\n\nNew multiplexed imaging services and translational research within the Spatial Proteomics Unit. \n\n\n\n\n\nLinnea Påvenius\n\n\n\nHjalmar Brismar – gamma 3 \n\n\n\nMitochondrial dynamics in primary and transformed cells. \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page.
URL:https://www.scilifelab.se/event/campus-solna-seminar-series-nov-24/
LOCATION:Milkyway SciLifeLab Solna\, Tomtebodavägen 23\, Solna
CATEGORIES:Community
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/09/IMG_20221103_123412496_HDR2-scaled.jpg
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20221124T150000
DTEND;TZID=Europe/Stockholm:20221124T160000
DTSTAMP:20260404T153747
CREATED:20221109T093512Z
LAST-MODIFIED:20221109T100336Z
UID:10000729-1669302000-1669305600@www.scilifelab.se
SUMMARY:Research seminar - Distributing biotechnology and hardware to advance research and health care
DESCRIPTION:Research seminar with Keith Pardee\nWhere: Lunch room in Gamma-building floor 2 at SciLifeLab. If you don’t have an access card\, wait in the SciLifeLab LobbyWhen: Thursday 24th November\, at 3 pm (The early birds will be served some fika\, so be there on time) \nKeith PardeeAssociate professor\, Leslie Dan Faculty of Pharmacy\, University of TorontoCanada Research Chair in Synthetic Biology and Human HealthCo-Director\, PRiME\, Precision Medicine Initiative\, Medicine by Design Investigator \nBio \nProf. Keith Pardee is working at the intersection of synthetic biology and human health. His lab is pioneering the development of in vitro devices to host cell-free synthetic gene networks for broad applications in research and human health. Pardee’s research interests include the development of molecular diagnostic tools for communicable diseases like Zika virus\, distributed drug manufacturing\, and regenerative medicine. \nHe is also the co-founder of several companies and initiatives including PRiME: A Precision Medicine Initiative\, En Carta Diagnostics\, Medicine by Design 2.0\, LSK Technologies\, and Liberum Biotech. \nhttps://www.pardeelab.org/
URL:https://www.scilifelab.se/event/research-seminar-distributing-biotechnology-and-hardware-to-advance-research-and-health-care/
LOCATION:Gamma 2 Lunchroom\, SciLifeLab\, Tomtebodavägen 23\, Solna\, Sweden
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20221124T150000
DTEND;TZID=Europe/Stockholm:20221124T170000
DTSTAMP:20260404T153747
CREATED:20221121T152910Z
LAST-MODIFIED:20221122T094801Z
UID:10000737-1669302000-1669309200@www.scilifelab.se
SUMMARY:Chemical Biology Seminar
DESCRIPTION:“DATA-DRIVEN HALLMARKS OF ACUTE MYELOID LEUKEMIA: \n\n\n\nBIOLOGICAL\, PROGNOSTIC AND THERAPEUTIC IMPLICATIONS” \n\n\n\nTom Erkers  \n\n\n\nAssistant professor\, Dept. of Oncology-Pathology\, Karolinska Institutet \n\n\n\n“SYNTHETIC SWITCHES FOR DNA REPAIR –  \n\n\n\nCONTROLLING ENZYMATIC FUNCTIONS AT WILL” \n\n\n\nMaurice Michel \n\n\n\nAssistant professor\, Dept. of Oncology-Pathology\, Karolinska Institutet \n\n\n\n \n\n\n\nNov. 24 at 3.30 pm \n\n\n\nGamma 2 Lunch Room\, SciLifeLab Stockholm \n\n\n\nAnd on Zoom \n\n\n\n\nhttps://ki-se.zoom.us/j/64941340588
URL:https://www.scilifelab.se/event/chemical-biology-seminar/
LOCATION:Gamma 2 Lunchroom\, SciLifeLab\, Tomtebodavägen 23\, Solna\, Sweden
CATEGORIES:Community
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20221128T120000
DTEND;TZID=Europe/Stockholm:20221128T130000
DTSTAMP:20260404T153747
CREATED:20220927T104822Z
LAST-MODIFIED:20220927T104912Z
UID:10000698-1669636800-1669640400@www.scilifelab.se
SUMMARY:The Centre for Cellular Imaging - A research infrastructure for correlated multimodal imaging
DESCRIPTION:The Centre for Cellular Imaging – A research infrastructure for correlated multimodal imaging\n\n\n\nJulia Fernandez-Rodriguez \n\n\n\nThe CCI specializes in 3D correlative imaging\, i.e. the sequential combination of two or more imaging techniques to gain knowledge across multiple scales \n\n\n\nSciLifeLab is a national infrastructure within life science with a wide range of advanced technology and expertise. The newly started SciLifeLab site in Gothenburg includes units at both the University of Gothenburg and Chalmers University of Technology and has a strong connection to Sahlgrenska University Hospital. \n\n\n\nA light lunch will be offered during the talks for those joining on site. Online participation via Zoom is also available\, please click the zoom-link below to join the event at the appointed time. \n\n\n\nVenue\n\n\n\nAssembly Room Birgit Thilander\, Medicinaregatan 3
URL:https://www.scilifelab.se/event/the-centre-for-cellular-imaging-a-research-infrastructure-for-correlated-multimodal-imaging/
LOCATION:Birgit Thilander Lecture Hall\, Medicinaregatan 3\, Göteborg
CATEGORIES:Event
ORGANIZER;CN="SciLifeLab Gothenburg":MAILTO:gothenburg@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20221129T090000
DTEND;TZID=Europe/Stockholm:20221129T163000
DTSTAMP:20260404T153747
CREATED:20220923T175028Z
LAST-MODIFIED:20221128T154333Z
UID:10000690-1669712400-1669739400@www.scilifelab.se
SUMMARY:Ancient DNA symposium
DESCRIPTION:SciLifeLab Ancient DNA. Photo. Mikael Wallerstedt.\n\n\n\nThe possibility of studying humans\, animals\, plants\, and other forms of life that lived in the past using DNA analysis is providing new insight into history\, often with important implications for understanding our contemporary world. Ancient DNA can support investigation of e.g. prehistoric migrations and interactions\, cultural practices\, and development of agriculture\, as well as research into evolution\, ecology\, and biodiversity. \n\n\n\nThis symposium is organized to present the forefront and breadth of ancient DNA analysis and its value in context of other information in order to facilitate cross-disciplinary projects. \n\n\n\nThe event is organized by the Centre for Palaeogenetics at Stockholm University and Swedish Museum of Natural History\, in collaboration with SciLifeLab Ancient DNA unit and the National Genomics Infrastructure. \n\n\n\nThe symposium is free of charge. Deadline for registration is November 18th for on-site participation. \n\n\n\nDuring the coffee breaks\, representatives of SciLifeLab Ancient DNA unit\, the National Genomics Infrastructure (NGI)\, and the National Bioinformatics Infrastructure Sweden (NBIS) are available for project discussions. \n\n\n\nIf you are unable to join the meeting physically\, you can take part in all presentations online. Please register below to receive the link. \n\n\n\n\n\n\n\nRegistration\n\n\n\nPlease register for online participation. Registration for on-site participation is closed. \n\n\n\n\n\n\n\nProgram and Abstracts\n\n\n\n2022-Ancient-DNA-symposium-program-and-abstracts-1Download
URL:https://www.scilifelab.se/event/ancient-dna-symposium/
LOCATION:Large auditorium\, Swedish Museum of Natural History\, Frescativägen 40\, Stockholm\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/09/21A0115-scaled.jpg
ORGANIZER;CN="Ancient DNA Unit at SciLifeLab":MAILTO:magnus.lundgren@scilifelab.uu.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20221130T090000
DTEND;TZID=Europe/Stockholm:20221130T110000
DTSTAMP:20260404T153747
CREATED:20221013T073408Z
LAST-MODIFIED:20221130T172719Z
UID:10000714-1669798800-1669806000@www.scilifelab.se
SUMMARY:DDLS Industry PhD Collaboration Dialogue - online
DESCRIPTION:The SciLifeLab and Wallenberg National Program for Data-Driven Life Science (DDLS) is a national 12-year research program that involves 11 partner organizations\, collaborators nationally and internationally\, the Swedish life science community\, industry\, healthcare\, and other stakeholders in society at large. \n\n\n\nDuring the program\, more than 250 PhD students and 200 postdocs in academia and industry will be recruited to facilitate collaborations across sectors and disciplines. The DDLS academic and industrial PhD students and postdocs will all be enrolled in the DDLS Research School promoting acquisition of high competence and skills. This is to meet the future needs within data-driven life sciences\, industrial R&D\, health care and society. The DDLS Research School will be launched in 2024.  \n\n\n\nNow\, both well established companies\, small and medium-sized enterprises\, within the data-driven life science sector as well as academia\, are invited to partake in this event and contribute to the future of the program. \n\n\n\n \n\n\n\nAim\n\n\n\nThe aim of this event is to: \n\n\n\n\nInform about the program and KAW donation letter that specifies industrial PhDs and Postdocs.\n\n\n\nInform about the DDLS Research School\, timeline and recruiting models for industrial PhDs.\n\n\n\nEngage industry in the DDLS Program (e.g.\, being part of the DDLS review committees and involved in decisions and other types of evaluations regarding the DDLS research school).\n\n\n\nDiscuss how industry would like to contribute to the the DDLS Research School and the program.\n\n\n\n\n\n\n\n\nPreliminary Agenda\n\n\n\n\nWelcome\n\n\n\nPresentation of the DDLS program\n\n\n\nOverview of the DDLS Research School\n\n\n\nRecruitment Models for DDLS PhD Program – Academia & Industry\n\n\n\nDiscussion/Dialogue\n\n\n\n\n\n\n\n\nRegistration\n\n\n\nRegister as soon as possible but no later than November 28th. \n\n\n\nRegister here\n\n\n\n\n\n\n\nContact\n\n\n\nMojgan Seraji (contact information below) or DDLS support team: ddls@scilifelab.se \n\n\n\n\n\n\n\n \n\n\n\nMojgan SerajiCollaboration ManagerProject leading\, SciLifeLab Code of Conduct\, DDLS PhD & Postdoc Programs\, DDLS Industry CollaborationMojgan.Seraji@scilifelab.uu.se  +46 (0) 73 46 97 306
URL:https://www.scilifelab.se/event/ddls-industry-phd-collaboration-dialogue-online/
LOCATION:Online event via Zoom
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20221130T160000
DTEND;TZID=Europe/Stockholm:20221130T170000
DTSTAMP:20260404T153747
CREATED:20221128T170202Z
LAST-MODIFIED:20221130T131842Z
UID:10000741-1669824000-1669827600@www.scilifelab.se
SUMMARY:Biophysical experiments and biomolecular simulations: A perfect match?
DESCRIPTION:Abstract-BRAINSTRUC__lindorff__Download\n\n\nA special seminar by Professor Kresten Lindorff-Larsen\, University of Copenhagen
URL:https://www.scilifelab.se/event/biophysical-experiments-and-biomolecular-simulations-a-perfect-match/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Event
ORGANIZER;CN="Molecular Biophysics Stockholm":MAILTO:join-mbp@scilifelab.se.
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20221130T170000
DTEND;TZID=Europe/Stockholm:20221130T180000
DTSTAMP:20260404T153747
CREATED:20221116T151917Z
LAST-MODIFIED:20221116T152937Z
UID:10000732-1669827600-1669831200@www.scilifelab.se
SUMMARY:FAIRPoints-Introducing Community Guidelines for Sharing Dataset Quality Information
DESCRIPTION:Location: Online via Zoom \n\n\n\n\n\nSee Event in your Time Zone \n\n\n\nSpeaker: Dr.Ge Peng \n\n\n\nKnowledge about the quality of data and associated metadata\, software\, workflows and computing environment is important to establish the trustworthiness of individual datasets\, support informed decisions on their (re)use\, and is an essential part of the diverse data and information distribution ecosystem that supports open-source science. However\, quality information\, being difficult to curate and often context-specific\, is currently not readily available for sharing within and across disciplines. \n\n\n\nTo help address this challenge\, and to promote the creation and (re)use of freely and openly shared dataset quality information\, members of multiple\, international groups collaborating with domain experts have undertaken the development of community guidelines with practical recommendations for the Earth science community. The guidelines follow the guiding principles of being findable\, accessible\, interoperable\, and reusable (FAIR). \n\n\n\nThe FAIR dataset quality information guidelines are intended to help stakeholders\, such as scientific data centers\, digital data repositories\, and producers\, publishers\, stewards and managers of data\, to achieve the following: i) capture\, describe\, and represent quality information of their datasets in a manner that is consistent with the FAIR guiding principles; ii) allow for the maximum discovery\, trust\, sharing\, and reuse of their datasets; and iii) enable international access to and integration of dataset quality information. \n\n\n\nBio: \n\n\n\nDr.Ge Peng is currently a Senior principal research scientist from the University of Alabama in Huntsville (UAH)\, supporting the NASA Interagency Implementation and Advanced Concepts Team (IMPACT) Project. With a Ph.D. in meteorology and a primary research focus on exploring the variability of essential climate variables of Earth atmosphere\, ocean\, and cryosphere\, she has worked with various types of Earth observations and derived data products. She has first-hand experience of the challenges in finding and obtaining data quality information\, which led her to find ways to systematically evaluate data quality as well as document and share quality information. Dr. Peng is a strong advocate of promoting scientific data stewardship and open science. She has volunteered for organizations that strive to minimize the barrier to data and information sharing\, such as the Earth System Science Data (ESSD) Journal\, the World Meteorological Organization (WMO)\, and the Earth Science Information Partners (ESIP). Dr. Peng is a leading author of several data stewardship assessment models for national and international Earth science organizations and has published a number of peer-reviewed papers on trends and variability of climate data\, research data management and stewardship. \n\n\n\n \n\n\n\nFAIRPoints is an event series highlighting pragmatic measures developed by the community towards the implementation of the FAIR (Findable\, Accessible\, Interoperable\, Reusable) data principles\, in collaboration with GoFAIR US\, SDSC\, and SciLifeLab Data Centre.  \n\n\n\n\n\n\n\nRegister here\n\n\n\nSign up for future events here \n\n\n\nTwitter: @FAIR_Points
URL:https://www.scilifelab.se/event/fairpoints-introducing-community-guidelines-for-sharing-dataset-quality-information/
LOCATION:Online event via Zoom
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20221201T120000
DTEND;TZID=Europe/Stockholm:20221201T130000
DTSTAMP:20260404T153747
CREATED:20220912T094220Z
LAST-MODIFIED:20221121T090652Z
UID:10000676-1669896000-1669899600@www.scilifelab.se
SUMMARY:Campus Solna Seminar Series: Pontus Höjer and Guido Baselli
DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an  initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nThis week:\n\n\n\n\n\n\nPontus Höjer\n\n\n\nAfshin Ahmadian – alpha 3 \n\n\n\nOmics exploration with Droplet Barcode Sequencing (DBS). \n\n\n\n\n\nGuido Baselli\n\n\n\nVicent Pelechano – gamma 5 \n\n\n\nIdentification of novel factors regulating non genetic cell plasticity in Chronic Myeloid Leukemia. \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page.
URL:https://www.scilifelab.se/event/campus-solna-seminar-series-dec-1/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Community
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/09/IMG_20221103_124630107_HDR-scaled.jpg
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20221201T173000
DTEND;TZID=Europe/Stockholm:20221201T180000
DTSTAMP:20260404T153747
CREATED:20220831T154601Z
LAST-MODIFIED:20221110T115015Z
UID:10000665-1669915800-1669917600@www.scilifelab.se
SUMMARY:[Clinical Talks] Recording biology to the genome itself
DESCRIPTION:Jay Shendure\n\n\n\nProfessor of Genome Sciences at the University of Washington \n\n\n\n\n\n\n\nJay Shendure is a Investigator of the Howard Hughes Medical Institute\, Professor of Genome Sciences at the University of Washington\, Director of the Allen Discovery Center for Cell Lineage Tracing\, and Scientific Director of the Brotman Baty Institute for Precision Medicine. \n\n\n\nHis 2005 doctoral thesis with George Church included one of the first successful reductions to practice of next generation DNA sequencing. Dr. Shendure’s research group in Seattle pioneered exome sequencing and its earliest applications to gene discovery for Mendelian disorders and autism; cell-free DNA diagnostics for cancer and reproductive medicine; massively parallel reporter assays\, saturation genome editing; whole organism lineage tracing\, and massively parallel molecular profiling of single cells.Dr. Shendure is the recipient of the Curt Stern Award from the American Society of Human Genetics (2012)\, the Richard Lounsbery Award from the National Academy of Sciences (2019) and the Mendel Award from the European Society of Human Genetics (2022) and is an elected member of the American Association for the Advancement of Science (AAAS) and the National Academy of Sciences (NAS). He serves or has previously served as an advisor to the NIH Director\, the US Precision Medicine Initiative\, the National Human Genome Research Institute\, the Chan-Zuckerberg Initiative and the Allen Institutes for Cell Science and Immunology. He received his MD and PhD degrees from Harvard Medical School in 2007. \n\n\n\nregister to receive zoom link\n\n\n\nModerator: Michael Akhras\, Colibri Ventures \n\n\n\n\n\n\n\n \n\n\n\nClinical Talks\n\n\n\nClinical Talks is back for more! With a brand new and shiny Season 6. After successfully completing 5 seasons with > 70 enthusiastic Clinical Talkers to our record\, we have barely scratched the surface of all the amazing work our clinical\, academic and industry Life Science community has to offer. More about the upcoming events is available here. \n\n\n\nThese events are co-organized by Karolinska Institutet Innovations AB and SciLifeLab\, and brought to you by Colibri Ventures.
URL:https://www.scilifelab.se/event/clinical-talks-recording-biology-to-the-genome-itself/
LOCATION:Online event via Zoom
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/08/Square-500x500-Clinical-Talks@4x.png
ORGANIZER;CN="Clinical Talks":MAILTO:precisionmedicine@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20221205T080000
DTEND;TZID=Europe/Stockholm:20221208T170000
DTSTAMP:20260404T153747
CREATED:20221031T164615Z
LAST-MODIFIED:20221031T164743Z
UID:10000724-1670227200-1670518800@www.scilifelab.se
SUMMARY:Workshop on Advanced Correlative Light and Electron Microscopy (CLEM) methods
DESCRIPTION:This 4-day workshop aims to highlight the advanced correlative light and electron microscopy (CLEM) techniques. Participants will learn the latest workflows on how to correlate fluorescence microscopy images with high resolution EM images obtained from state-of-the-art equipment. \n\n\n\nRead more\n\n\n\nWorkshop Content:The workshop includes both theory lectures and practical sessions on In-resin preserved florescence for CLEM\, Tokuyasu ultramicrotome sectioning combined with staining techniques on sections\, Cryo-CLEM and cryo-FIB milling\, as well as opportunities to discuss specific research projects and receive practical advice. Technical challenges and new ideas will be discussed\, and the participants are welcome to contribute with their experiences.  \n\n\n\nTarget Audience:This workshop is supported by the Nordic EMBL partnership for Molecular Medicine and welcomes applications from its members and other institutions. Participants are required to have practical experience in both light and electron microscopy. Due to limited number of places\, registration is based on a selection process. Selected lectures will be open to a larger range of participants and can be registered for under a ‘lecture only’ registration.Certificate/Credits:A course certificate will be provided to successful participants and a recommendation for 1\,5 ECTS.
URL:https://www.scilifelab.se/event/workshop-on-advanced-correlative-light-and-electron-microscopy-clem-methods/
LOCATION:Kemiskt Biologiskt Centrum\, Umeå University\, Linnaeus väg 6\, Umeå\, 90736
CATEGORIES:Course
ORGANIZER;CN="SciLifeLab Ume%C3%A5":MAILTO:umea@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20221206T090000
DTEND;TZID=Europe/Stockholm:20221206T184500
DTSTAMP:20260404T153747
CREATED:20220919T142908Z
LAST-MODIFIED:20221124T091417Z
UID:10000683-1670317200-1670352300@www.scilifelab.se
SUMMARY:SciLifeLab Optical Clearing and Expansion symposium
DESCRIPTION:The Advanced Light Microscopy unit at Science for Life laboratory cordially welcomes you to a symposium on developments and applications of clearing and expansion methods from world leading experts. \n\n\n\nRegistration\n\n\n\nRegistration form\n\n\n\n\n\n\n\nProgram\n\n\n\n12:45Whole-body/organ imaging with single-cell resolution by CUBICHiroki Ueda – University Tokyo/Riken BDR\, Japan13:15DISCO clearing approaches paired with spatial molecular mappingHarsharan Bhatia\, Helmholtz Munich\, Germany13:45Volumetric imaging of cleared samplesJacques Paysan – ZEISS14:15Coffee break14:40Expansion Microscopy: Development\, Application\, and Future DirectionsJinyoung Kang – MIT\, USA15:10Pan-ExM-t for molecular ultrastructural visualization of brain tissueOns M’Saad – Yale University\, USA15:40Coffee break16:05Cryo-ExM: coupling cryo-fixation with expansion microscopyVirginie Hamel – University of Geneva\, Switzerland16:35Visualizing cellular and tissue ultrastructure using TRExHugo Damstra – Utrecht University\, The Netherlands17:15-18:45POSTER session with snacks/beverages\n\n\n\n Contact\n\n\n\nhans.blom@scilifelab.se
URL:https://www.scilifelab.se/event/scilifelab-optical-clearing-and-expansion-symposium/
LOCATION:Eva & Georg Klein\, Solnavägen 9\, Stockholm\, 17165\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/09/Ny-Bild-Dec-6.png
ORGANIZER;CN="Advanced Light Microscopy Unit":MAILTO:stewen@kth.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20221206T110000
DTEND;TZID=Europe/Stockholm:20221206T120000
DTSTAMP:20260404T153747
CREATED:20221201T122659Z
LAST-MODIFIED:20221201T122702Z
UID:10000743-1670324400-1670328000@www.scilifelab.se
SUMMARY:SciLifeLab Uppsala PhD&Postdoc Online Seminar Series – Cancer Theme
DESCRIPTION:Welcome back to the SciLifeLab Uppsala PhD&Postdoc seminar series! \nThis seminar will take place on Tuesday December 6 from 11h to 11:50h on Zoom (https://uu-se.zoom.us/j/66489618700) \nFor this occasion the speakers will be: \n1. Xiaonan Zhang\, Postdoc at Tobias Sjöblom’s Lab (Cancer Precision Medicine)\, Dept. of Immunology\, Genetics and Pathology\, Uppsala University\n\n\nTitle:  Exploiting allelic loss in cancer therapy: Identification of NAT2 and CYP2D6 as potential targets\n\nSummary:\nLoss of heterozygosity (LOH) is observed in >90% of human cancers and results in the loss of allelic variation in thousands of genes. LOH thus creates genetic differences between tumor and normal cells\, particularly at gene loci where the individual is heterozygous for a wildtype and a loss-of-function (LoF) allele. We have sought to identify genes with common LoF polymorphisms where tumor cells that have lost the gene activity can be targeted by low-molecular-weight drugs or other means. We previously reported that recurring LOH at the NAT2 locus at 8p22 in colorectal cancers (CRCs)\, and the ensuing loss of NAT2 enzyme activity\, could be exploited for anticancer therapy. Recently\, we discovered a group of ATPase inhibitors that exhibited specific toxicity to CRC cells with high NAT2 activity. In parallel\, we investigated the CYP2D6 locus as the CYP2D6 enzyme metabolizes ~25% of clinically used drugs and frequently undergoes LOH in several tumor types. We have established liver cancer cell models and demonstrated that the activity of three anti-cancer compounds\, used in clinic or in clinical trials\, is dependent on CYP2D6. We anticipate that a subset of CRC and liver cancer patients with LOH events in NAT2 or CYP2D6 will benefit from this research. \n\n\n\n2. Kehuan Wang\, PhD Student at Carl-Henrik Heldin’s Lab (Cancer)\, Dept. of Medical Biochemistry and Microbiology\, Uppsala University\n\nTitle: The Proteasomal\, Lysosomal and Autophagosomal Degradation Pathways of PDGFRβ\n\nSummary:\n\nPlatelet-derived growth factor (PDGF)-induced signaling via PDGF receptor β (PDGFRβ) leads to activation of downstream signaling pathways which regulate multiple cellular responses\, such cell migration\, proliferation and survival. Signaling via PDGFRβ is dependent on subcellular location of signaling molecules and hence the internalization of the receptor. It is not clear exactly how PDGFRβ is degraded\, both endosomal/lysosomal and proteasomal degradation has been suggested. In this study\, we have characterized the proteolytic cleavage of ligand-induced PDGFRβ and found that proteolytic cleavage of PDGFRβ resulted in two fragments. This cleavage is dependent on the internalization of PDGFRβ\, which can be blocked by the treatment with bortezomib. Treatment with bortezomib resulted in increased phosphorylation of PDGFRβ and the down-stream signaling molecules PLCγ and STAT3\, while phosphorylation of Erk1/2 MAPK was reduced and Akt was unaffected. We also investigated the possibility that PDGFRβ is degraded by selective autophagy in response to starvation or ligand-induced downregulation of receptor from the cell surface. We found that PDGFRβ accumulated in cells treated with bafilomycin A1 upon serum starvation which could be reversed by inhibition of protein synthesis with cycloheximide. Overexpression of LC3A\, but not LC3B\, promoted the formation of a complex between PDGFRβ and p62. Additionally\, PDGFRβ interacted with LC3A and other members of LC3-like family\, i.e. GABARAP and GABARAPL1. In conclusion\, we speculate that the step-wise proteolytic cleavage of PDGFRβ may have functional consequences for signaling. Macroautophagy may not play a major role in ligand-induced downregulation of PDGFRβ but it could be involved in downregulation of PDGFRβ during starvation via targeting by p62 to non-conventional autophagic or proteasomal pathways that include LC3A and GABARAPs. The functional involvement of these pathways in the control of PDGFRβ levels remains to be further investigated.
URL:https://www.scilifelab.se/event/scilifelab-uppsala-phdpostdoc-online-seminar-series-cancer-theme/
LOCATION:Online event via Zoom
CATEGORIES:Community
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/11/SciLifeLab-PhDPostdoc-conuncil-poster_landscape_December_6.png
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20221206T120000
DTEND;TZID=Europe/Stockholm:20221206T130000
DTSTAMP:20260404T153747
CREATED:20220927T104924Z
LAST-MODIFIED:20221201T154038Z
UID:10000699-1670328000-1670331600@www.scilifelab.se
SUMMARY:Cancelled: OligoNova Hub - National resource for development of oligonucleotide therapies
DESCRIPTION:OligoNova Hub – National resource for development of oligonucleotide therapies\n\n\n\nPär Matsson \n\n\n\nWe will present OligoNova Hub and the capabilities we provide for academic researchers to transform their scientific discoveries into new oligonucleotide therapies. \n\n\n\nSciLifeLab is a national infrastructure within life science with a wide range of advanced technology and expertise. The newly started SciLifeLab site in Gothenburg includes units at both the University of Gothenburg and Chalmers University of Technology and has a strong connection to Sahlgrenska University Hospital. \n\n\n\nA light lunch will be offered during the talks for those joining on site. Online participation via Zoom is also available\, please click the zoom-link below to join the event at the appointed time. \n\n\n\nVenue\n\n\n\nThis event has been cancelled.
URL:https://www.scilifelab.se/event/oligonova-hub-national-resource-for-development-of-oligonucleotide-therapies/
LOCATION:Birgit Thilander Lecture Hall\, Medicinaregatan 3\, Göteborg
CATEGORIES:Event
ORGANIZER;CN="SciLifeLab Gothenburg":MAILTO:gothenburg@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20221207T130000
DTEND;TZID=Europe/Stockholm:20221208T130000
DTSTAMP:20260404T153747
CREATED:20221026T084455Z
LAST-MODIFIED:20221109T150910Z
UID:10000722-1670418000-1670504400@www.scilifelab.se
SUMMARY:Data-driven Epidemiology and biology of infections Research Area Symposium
DESCRIPTION:Welcome to a symposia with the new DDLS Fellows and national as well as international researchers within the area of data-driven epidemiology and biology of infections. \n\n\n\nWe encourage personal participation to network with the new DDLS Fellows and other experts of the field however online participation is possible. \n\n\n\nDeadline for registration November 29th \n\n\n\n\n\n\n\nRegister here\n\n\n\nProgram Wednesday\, 7 December\n\n\n\n12:00 LUNCH will be served \n\n\n\n13:00- 13:20 Welcomes and Introductions \n\n\n\nSiv Andersson\, Head of Basic Research at Knut and Alice Wallenberg Foundation\, Uppsala University\,  \n\n\n\nOlli Kallioniemi\, Director SciLifeLab and DDLS Director\, Karolinska Institutet \n\n\n\nMaria Smedh Site Coordinator\, SciLifeLab Göteborg \n\n\n\n13:20 DDLS in Epidemiology and Biology of Infection  \n\n\n\nOliver Billker\, DDLS Research Area Lead\, Umeå University \n\n\n\n13:30 Keynote: Using genomic surveillance data to understand bacterial epidemiology \n\n\n\nNicholas J Croucher\, Imperial College London \n\n\n\n14:10 DDLS Fellow talk: Predicting the disease threats of the future \n\n\n\nJohan Bengtsson-Palme\, DDLS Fellow at Chalmers University of Technology \n\n\n\n14:50 Keynote (virtual) Data and decisions in an imperfect world  \n\n\n\nBill Hanage\, Associate Professor\, Harvard\, School of Public Health  \n\n\n\n15:30 COFFEE \n\n\n\n16:00 DDLS Fellow talk: A global perspective on antimicrobial resistance in animals raised for food \n\n\n\nThomas van Boeckel\, ETH Zurich and future DDLS Fellow at Gothenburg University \n\n\n\n16:40 Pandemic preparedness – The SciLifeLab perspective \n\n\n\nStaffan Svärd\, SciLifeLab Scientific Director\, Uppsala University \n\n\n\n17:10 Discussion and conclusion of the first day \n\n\n\n17:30 Snacks and mingle in Restaurant Nordic \n\n\n\n18:30 SYMPOSIUM DINNER in Restaurant Nordic \n\n\n\n\n\n\n\nProgram Thursday\, 8 December\n\n\n\n8:30 DDLS Fellow Talk: Strength in numbers: leveraging publicly available (meta)genomic data to gain insight into the epidemiology and virulence potential of bacterial pathogens \n\n\n\nLaura Michelle Carroll\, Umeå University \n\n\n\n9:10 Keynote: Data-driven dynamic disease surveillance and studies for mapping systemic effects of the human gut microbiome \n\n\n\nTove Fall\, Uppsala University \n\n\n\n9:50 COFFEE \n\n\n\n10:20 DDLS Fellow Talk: Intimately microbial: symbioses in OB-GYN\,  \n\n\n\nLuisa Warchavchik Hugerth\, DDLS Fellow Uppsala University  \n\n\n\n11:00 National services for data and bioinformatics within DDLS and SciLifeLab \n\n\n\nSara El-Gebali\, SciLifeLab Data Centre\, \n\n\n\nBjörn Nystedt\, National Bioinformatics Infrastructure \n\n\n\nShort presentations followed by a discussion to determine needs for computational support for infections research in Sweden. \n\n\n\n12:00 Discussion: DDLS initiative and Data-Driven Epidemiology and Biology of Infection: where next? \n\n\n\n12:30 LUNCH will be served
URL:https://www.scilifelab.se/event/data-driven-epidemiology-and-biology-of-infections-research-area-symposium/
LOCATION:Europasalen\, Konferenscentrum Wallenberg\, Gothenburg\, Medicinaregatan 20\, Göteborg\, 413 90\, Sweden
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20221208T093000
DTEND;TZID=Europe/Stockholm:20221208T123000
DTSTAMP:20260404T153747
CREATED:20221019T101155Z
LAST-MODIFIED:20221206T121942Z
UID:10000716-1670491800-1670502600@www.scilifelab.se
SUMMARY:Science & SciLifeLab Prize Symposium
DESCRIPTION:Welcome to the Scientific Symposium presenting the winners of the 2022 Science & SciLifeLab Prize for Young Scientists.  \n\n\n\nYou can still register to join on Zoom and onsite if seats are available. For onsite registration\, we can not consider special food requirements after November 30. \n\n\n\n\n\n\n\nregistration\n\n\n\n\n\n\n\nScience\, the American Association for the Advancement of Science (AAAS)\, and SciLifeLab joined forces in 2013\, creating the Science & SciLifeLab Prize for Young Scientists to recognize excellence amongst young researchers from around the world. A global Prize aimed at rewarding scientists at an early stage of their careers.  \n\n\n\nThe Prize was launched with the vision of recognizing that global economic health depends on a vibrant research community. A vision that will only come true if we encourage our best and brightest to continue in their chosen fields of research. \n\n\n\nConsidering the difficult economic environment for budding scientists\, it is crucial that we provide them with extra encouragement as they begin their scientific careers. \n\n\n\nThe international Prize is awarded annually to four young scientists for outstanding life science research based on a doctoral degree earned in the previous two years. Each year\, a Grand Prize winner is selected from the applicants to receive 30\,000 USD in prize money\, and the three other category winners are awarded 10\,000 USD each for their accomplishments. The grand prize-winning essay will be published in Science\, and essays from the three category winners will be published online. \n\n\n\nAll four winners of the Science & SciLifeLab Prize for Young Scientists are invited to Sweden December 6-11 to participate in a unique week filled with events in honor of science. They will have the opportunity to meet with leading scientists in their field of research and create life-long connections to support their careers.  \n\n\n\n \n\n\n\nProgram\n\n\n\n\n\n\n\n09:00Breakfast is served outside the Lecture Hall09:30Welcome words:Olli Kallioniemi\, SciLifeLab Director Valda Vinson\, Science AAAS09:45The winners present their research (15’+5′)Moderators: Alexandra Teleki & Mikael Sellin\, SciLifeLab FellowsEndosomes\, Receptors and Viruses: Deciphering the Mechanisms of Infection at the Host-Pathogen Interface  James Daly\, Cell & Molecular Biology Category Prize WinnerUncovering the Degrader of D-type Cyclins Daniele Simoneschi\, Molecular Medicine Category Prize WinnerCoffee break How do bacteria cope with a changing world?  Stefany Moreno-Gámez\, Ecology and Environment Category Prize WinnerThe autobiography of a gut bacterium  Florian Schmidt\, Proteomics and Systems Biology Approaches\, Grand Prize Winner11:35Interview with the WinnersModerators: Alexandra Teleki & Mikael Sellin\, SciLifeLab Fellows11:55Keynote lecture: Rediscover Your Why – Don’t Lose Sight of Why You Pursued Scientific InquiryGilda A. Barabino\, President of the American Association for the Advancement of Science (Bio below)12:25Closing words:Mia Phillipson\, SciLifeLab Co-Director12:30Lunch is served\n\n\n\n\n\n\n\nBooklet\n\n\n\nGilda A. Barabino – Bio\n\n\n\n\n\n\n\n\n\n\n\nPlease contact events@scilifelab.se if you have any questions.
URL:https://www.scilifelab.se/event/science-scilifelab-prize-symposium/
LOCATION:Navet\, SciLifeLab Uppsala\, SciLifeLab Uppsala\, BMC C11\, Husargatan 3\, Uppsala\, 75237\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/12/Prize_2022_Sida_01.png
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20221212T090000
DTEND;TZID=Europe/Stockholm:20221212T160000
DTSTAMP:20260404T153747
CREATED:20221107T094021Z
LAST-MODIFIED:20221212T094712Z
UID:10000727-1670835600-1670860800@www.scilifelab.se
SUMMARY:SciLifeLab Integrated Structural Biology Platform Symposium
DESCRIPTION:SciLifeLab Integrated Structural Biology invites you to the ISB annual users meeting to be held in Solna on December 12\, 9-16.  \n\n\n\n The program will contain an overview of infrastructures in Sweden that can support your structural biology project\, from gene to final 3D structure. We will also hear examples of projects that were supported by the SciLifeLab infrastructures during 2022\, comprising Cryo-EM\, Structural Proteomics and NMR. \n\n\n\n We welcome you to join in person in the SciLIfeLab building (Tomtebodavägen 23\, 171 65 Solna) but also understand if you prefer to join in by zoom. The meeting will be a hybrid meeting. \n\n\n\nRegistration\n\n\n\n \n\n\n\n \n\n\n\nProgram\n\n\n\nProgram – December 12 \n\n\n\nISB2022_221212Download
URL:https://www.scilifelab.se/event/scilifelab-integrated-structural-biology-platform-symposium/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Event
ORGANIZER;CN="Integrated Structural Biology Platform at SciLifeLab":MAILTO:cecilia.persson@nmr.gu.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20221212T100000
DTEND;TZID=Europe/Stockholm:20221212T183000
DTSTAMP:20260404T153747
CREATED:20220927T190428Z
LAST-MODIFIED:20221212T092442Z
UID:10000701-1670839200-1670869800@www.scilifelab.se
SUMMARY:Data-Driven Precision Medicine and Diagnostics Research Area Symposium
DESCRIPTION:Welcome to the first in-person symposium in data-driven precision medicine and diagnostics (PMD) research area. Listen to the Data Driven Life Science (DDLS) fellows recruited in this research area and expand your network with international and national colleagues. \n\n\n\nThe data-driven precision medicine and diagnostics symposium on December 12\, 2022\, is the first in-person symposium in the research area of precision medicine and diagnostics of the DDLS program. This meeting brings together the community in precision medicine and diagnostics and researchers who implemented artificial intelligence and machine learning applications in their research in PMD to improve human health and diagnostics\, introduces newly appointed DDLS fellows in the PMD research area\, and provides opportunities for networking across the research community and the SciLifeLab infrastructures. We are excited to host three international keynote speakers and welcome the community to join us. Hopefully\, this event will inspire you on the potentials of data-driven precision medicine and diagnostics in Sweden. \n\n\n\nTarget group: We welcome all researchers interested in the DDLS program and data-driven precision medicine and diagnostics. \n\n\n\nVenue: Sune Bergström Aula\, BioClinicum\, New Karolinska University Hospital\, Solnavägen 30\, Stockholm  \n\n\n\nOrganizer: SciLifeLab\, host of SciLifeLab & Wallenberg National Program for Data-Driven Life Science. \n\n\n\nDeadline for registration extended to December 12th 9 am (earlier 2nd of December).  \n\n\n\n\n\n\n\nAgenda & speaker bios\n\n\n\nRegister here\n\n\n\n\n\n\n\nAGENDA\n\n\n\nTimeSession/Title of the presentationPresenter10.00Registration10:15Welcome and Introduction to Precision Medicine and Diagnostics Research AreaJanne Lehtiö10:30Scientific presentations – Precision Medicine  Chair: Fulya Taylan  Opening Keynote: FinnGen: a public-private partnership improving human health through genetic researchMervi Aavikko Genomic Medicine Sweden: Lessons learned and future possibilities within the Swedish health data spacePer Sikora Implementation of an academic clinical decision support system for precision oncology: the Molecular Tumor Board Portal (Digital)David Tamborero11:40Lunch 12:45Scientific presentations – Imaging and AI for Precision Medicine  Chair: Magnus Boman  AIDA – supporting AI research in diagnostic imagingClaes Lundström AI-based precision pathology – scalable solutions for cancer patient stratification and phenotypingMattias Rantalainen Deep learning for PET image analysisIda Häggström 13:40Scientific presentations – Digital Twins in Healthcare  Chair: Päivi Östling Building an ecosystem for digital twins in healthcareLiesbet Geris M4-health and digital twins: bring a digital copy of yourself with you throughout your health journeyGunnar Cedersund Towards precision prevention of rheumatoid arthritis; novel tools and novel resultsLars Klareskog14:35Coffee break 15:00SciLifeLab and DDLS Precision Medicine and Diagnostics  Chair: Janne Lehtiö  Introduction to SciLifeLab and DDLS ProgramOlli Kallioniemi SciLifeLab’s Data Center and Precision Medicine & Diagnostics Data Science NodeJohan Rung Bioinformatics support for Precision Medicine and DiagnosticsPär Engström Q&A sessionJanne Lehtiö16:00DDLS Fellows  Chair: Åsa Johansson  Deep lipidomics profiling provides potential biomarkers for precision nutrition approaches in cardiometabolic disease preventionClemens Wittenbecher Integrative multi-omics for precision medicineWen Zhong Harnessing the promise of next-generation plasma profiling for pan-cancer diagnosticsFredrik Edfors 17:00Closing Keynote  Chair: Janne Lehtiö  The need to model OMICs and routine (para)clinical data together – CLL as an example (Digital)Carsten Utoft Niemann17:30 – 18:30Networking with drinks 
URL:https://www.scilifelab.se/event/data-driven-precision-medicine-and-diagnostics-research-area-symposium/
LOCATION:Sune Bergström Aula\, BioClinicum\, New Karolinska University Hospital\, Solnavägen 30\, Stockholm\, 17164\, Sweden
CATEGORIES:Event
END:VEVENT
END:VCALENDAR