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X-WR-CALDESC:Events for SciLifeLab
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DTSTART;TZID=Europe/Stockholm:20250505T151500
DTEND;TZID=Europe/Stockholm:20250505T161500
DTSTAMP:20260404T140915
CREATED:20250128T103122Z
LAST-MODIFIED:20250423T091703Z
UID:10001462-1746458100-1746461700@www.scilifelab.se
SUMMARY:[The Svedberg seminar] - Viral ecogenomics: exploring viral diversity and virus-host interactions from metagenomes
DESCRIPTION:Simon RouxPhD\, Viral Genomics Group Lead DOE Joint Genome Institute\, Lawrence Berkeley National Laboratory\, USA \n\n\n\n \n\n\n\n \n\n\n\nBio\n\n\n\nDr. Roux lead the Viral Genomics group as part of the Metagenome program of the DOE Joint Genome Institute. Research in the group includes the development of tools and methods to explore viral diversity and the study of virus:host interactions in model soil and freshwater environments. The long-term goal his research is to understand the ecological and evolutionary drivers of virus:host dynamics in natural microbial communities and address questions such as “how do viruses spread and adapt across environments ?”\, “how do viruses take over and reprogram microbial cells ?”\, and “how do viral infections alter ecosystem processes ?”. \n\n\n\nViral ecogenomics: exploring viral diversity and virus-host interactions from metagenomes\n\n\n\nMicrobes are driving nutrient and energy transfers across the planet’s ecosystems\, but do so under strong constraints exerted by viruses. Over the last decade\, metagenomics revolutionized our ability to “see” viruses by providing large genome catalogs for uncultivated viruses\, enabling a better characterization of virus-host interactions and their impact on microbiomes. Here I will present our latest work in this field\, including (i) new approaches to maximize the recovery and annotation of viral genomes from metagenomes\, (ii) analysis of virus-host dynamics across seasons in a natural soil ecosystem based on paired metagenomes and metatranscriptomes\, and (iii) unexpected challenges in leveraging CRISPR spacer data to infer virus:host interactions. \n\n\n\n \n\n\n\n \n\n\n\n\n\n\n\nHost: Maliheh Mehrshad maliheh.mehrshad@slu.se SLU\, Luisa Hugerth luisa.hugerth@scilifelab.se UU
URL:https://www.scilifelab.se/event/the-svedberg-seminar-simon-roux/
LOCATION:BMC Room C8:301\, Husargatan 3\, Uppsala\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/02/Picture1-The-Svedberg.png
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20250506T120000
DTEND;TZID=Europe/Stockholm:20250506T130000
DTSTAMP:20260404T140915
CREATED:20250416T120902Z
LAST-MODIFIED:20250416T120941Z
UID:10001533-1746532800-1746536400@www.scilifelab.se
SUMMARY:Umeå seminar series: Cryo-focused ion beam milling (cryo-FIB-SEM): Taking you where you need to go
DESCRIPTION:SciLifeLab Site Umeå/KBC Infrastructure Seminar Series \n\n\n\nSpeaker: Erin Schexnaydre\, Staff scientist\, Umeå Centre for Electron Microscopy (UCEM)\, Umeå University \n\n\n\nShort description: Cryo-focused ion beam milling (cryo-FIB) is a powerful technique. Its power comes from its versatility to study biological systems in vitro or in situ\, i.e. within cells or tissue. It has the ability to reach uncharted regions in biological systems. Cryo-FIB milling is used to expose 100–250 nm thin sections (called lamella) in intact frozen cells and tissue. The process allows access into the cells for high-resolution cryo-electron tomography (cryo-ET) and structure determination of biomolecules in their native environment. \n\n\n\nWebpage of Umeå Centre for Electron Microscopy (UCEM) \n\n\n\n\nRegistration: Sign up for the IRL seminar and reserve your free lunch (salad\, drink\, and a little sweet snack) by Friday\, 2 May\, 13:30: https://www.umu.se/en/research/infrastructure/scilifelab/scilifelab-site-umea–kbc-infrastructure-seminar-series Follow online (registration is not required): https://umu.zoom.us/j/69390567429
URL:https://www.scilifelab.se/event/umea-seminar-series-cryo-focused-ion-beam-milling-cryo-fib-sem-taking-you-where-you-need-to-go/
LOCATION:Glasburen Seminar Room\, Chemical Biological Centre (KBC) Building\, Umeå University\, Umeå\, 901 87\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/webp:https://www.scilifelab.se/wp-content/uploads/2025/04/cryoet_workshop_image_16_9.jpg.webp
ORGANIZER;CN="SciLifeLab Ume%C3%A5":MAILTO:umea@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20250508T120000
DTEND;TZID=Europe/Stockholm:20250508T130000
DTSTAMP:20260404T140915
CREATED:20250109T102820Z
LAST-MODIFIED:20250505T132125Z
UID:10001442-1746705600-1746709200@www.scilifelab.se
SUMMARY:Campus Solna Seminar Series: Bartlomiej Porebski & Leo Dahl
DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 20 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nPhD students that are attending the Campus Solna Seminar lectures will have the opportunity to gain credits. For the syllabus and instructions on how to obtain these credits\, read this document. Please contact your own department at your host University to confirm.See here the full schedule for this semester. \n\n\n\nThis week:\n\n\n\n\n\n\nBartlomiej Porebski\n\n\n\nOscar Fernandez-Capetillo – alpha 4 \n\n\n\nPhenotypic drug discovery in ALS \n\n\n\n\n\nLeo Dahl\n\n\n\nJochen Schwenk – alpha 2 \n\n\n\nIdentification of immune phenotypes in self-sampling citizens \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page.
URL:https://www.scilifelab.se/event/campus-solna-seminar-series-bartlomiej-porebski-emil-johansson/
LOCATION:Milkyway SciLifeLab Solna\, Tomtebodavägen 23\, Solna
CATEGORIES:Community
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/09/IMG_20221103_120135408_HDR-scaled.jpg
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20250509T110000
DTEND;TZID=Europe/Stockholm:20250509T120000
DTSTAMP:20260404T140915
CREATED:20250502T103048Z
LAST-MODIFIED:20250502T130149Z
UID:10001539-1746788400-1746792000@www.scilifelab.se
SUMMARY:RNA profiling of cell types and cell states with FACS-seq
DESCRIPTION:Clinical Genomics Webinar Series\n\n\n\nClinical Genomics Umeå is hosting this webinar as part of the webinar series by the Clinical Genomics Platform \n\n\n\n \n\n\n\njoin zoom webinar\n\n\n\nThis webinar will illustrate how our research group uses flow cytometry and RNA-seq in tandem\, to assess cell type diversity and the effects of treatments in purified cell populations. Some examples will be presented where intracellular antibodies were used to enrich for cell types\, followed by RNA-seq profiling. In addition\, some examples will be given of the application of FACS-seq to profile purified cell types with low-abundance starting material\, in the context of cancer research. \n\n\n\n \n\n\n\nEveryone is welcome so feel free to spread the details with anyone who may be interested. Hope to see you there! \n\n\n\nHost: Linda Köhn\, Head of Unit \n\n\n\nInvited speaker: Cedric Patthey\, Staff Scientist\, Umeå University
URL:https://www.scilifelab.se/event/rna-profiling-of-cell-types-and-cell-states-with-facs-seq/
LOCATION:Online event via Zoom
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2025/05/Clinical-Genomics-Webinar-series.jpg
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20250512T150000
DTEND;TZID=Europe/Stockholm:20250512T160000
DTSTAMP:20260404T140915
CREATED:20250428T180742Z
LAST-MODIFIED:20250428T180743Z
UID:10001538-1747062000-1747065600@www.scilifelab.se
SUMMARY:Chemical Biology Seminar Series with Kilian Huber
DESCRIPTION:Welcome to a seminar with Kilian Huber in the Chemical Biology Seminar Series. \n\n\n\n“Chemical Biology Strategies for Target Discovery and Validation: Insights from Phenomics\, Proteomics\, and PROTACs” \n\n\n\nKilian HuberPhD & Senior Group Leader\, Chemical Biology & Chemical Probes\, University of Oxford \n\n\n\nWe will meet up with individuals who do not have access to SciLifeLab  in the reception at 14.50 \n\n\n\nZoom link
URL:https://www.scilifelab.se/event/chemical-biology-seminar-series-with-kilian-huber/
LOCATION:Hybrid event in Gamma 2 lunchroom and zoom\, Tomtebodavägen 23 B\, Solna\, 17165\, Sweden
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20250512T151500
DTEND;TZID=Europe/Stockholm:20250512T161500
DTSTAMP:20260404T140915
CREATED:20250423T092440Z
LAST-MODIFIED:20250424T080516Z
UID:10001534-1747062900-1747066500@www.scilifelab.se
SUMMARY:[The Svedberg seminar] Extracting meaning from high-throughput functional genomics data with Bayesian statistics
DESCRIPTION:High-throughput functional genomics technologies have transformed infection biology into an increasingly data-driven science\, yet extracting meaningful insights from complex experiments remains challenging. Bayesian hierarchical modeling addresses these challenges by providing a framework to reason about the underlying data generating process. Here\, I illustrate the power of this approach through two case studies. First\, Bayesian modeling of RNA decay dynamics in Salmonella enterica identified confounding factors significantly biasing previous global RNA half-life estimates and revealed novel functions of bacterial RNA-binding proteins via transcriptome-wide differential stability analysis. Second\, we designed and analyzed a genome-wide transposon insertion screen for Shigella flexneri in a realistic human organoid infection model\, accounting for population bottlenecks and uncovering an unexpected role for bacterial tRNA modification enzymes in regulating virulence. I will end with an outlook on scaling our approach to very large datasets in the context of bacterial single-cell RNA-seq. \n\n\n\nLars Barquist\, Assistant Professor University of Toronto\, Canada \n\n\n\nHost: Maria Letizia Di Martino ml.dimartino@imbim.uu.se and Mikael Sellin mikael.sellin@imbim.uu.se \n\n\n\nBio\n\n\n\nLars received his PhD from Cambridge University for work on high-throughput and computational methods for studying pathogen evolution at the Wellcome Sanger Institute. After an Alexander von Humboldt postdoctoral fellowship\, he went on to start his own research group in 2018 at the Helmholtz Institute for RNA-based Infection Research in Würzburg\, Germany before recently moving to the University of Toronto. His work spans a broad range of topics at the interface of infection and computational biology\, ranging from large-scale comparative pathogen genomics and genotype-to-phenotype inference to detailed molecular studies of regulatory mechanisms and translational applications in antibiotic development.
URL:https://www.scilifelab.se/event/the-svedberg-seminar-lars-barquist/
LOCATION:BMC Room C8:301\, Husargatan 3\, Uppsala\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/02/Picture1-The-Svedberg.png
ORGANIZER;CN="The Svedberg Seminar Series":MAILTO:thesvedberg@scilifelab.uu.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20250513T080000
DTEND;TZID=Europe/Stockholm:20250515T170000
DTSTAMP:20260404T140915
CREATED:20250122T135937Z
LAST-MODIFIED:20250123T155444Z
UID:10001459-1747123200-1747328400@www.scilifelab.se
SUMMARY:Advanced Data Visualization
DESCRIPTION:National course is open for PhD students\, postdocs\, group leaders\, core facility staff and other employees in all Swedish universities who are interested in learning to produce high quality figures for publication and presentation purposes. We also welcome applications from outside of Sweden and from the non-academic sector\, for more info contact us! \n\n\n\nImportant dates and information\n\n\n\nApplication opens: January 28\, 2025 \n\n\n\nApplication closes: March 31\, 2025 \n\n\n\nConfirmation to accepted students: April 11\, 2025 \n\n\n\nFormat: This workshop runs on-site in Lund. Teaching assistants and instructors will be available throughout the course to help you with exercises and questions. \n\n\n\nResponsible teachers: Lokeshwaran Manoharan\, Markus Ringnér\, Louella Vasquez\, Katja Kozjek \n\n\n\nContact information: edu.plotting.r@nbis.se \n\n\n\n\n\nApplication\n\n\n\n\n\nCourse website\n\n\n\n\n\nCourse fee\n\n\n\nThe fee for this on-site training is: \n\n\n\n\n2000 SEK for participants from academic institutions\n\n\n\n9500 SEK for participants from non-academic organisations\n\n\n\n\nThe fee includes lunches\, coffee breaks\, snacks\, and a course dinner. \n\n\n\nIf you accept a spot in the course but do not attend (no-show)\, the full fee will still be charged. *Please note that NBIS cannot invoice individuals directly. \n\n\n\nCourse content\n\n\n\nPeople with all expertise-levels in R and plotting are encouraged to apply. The course materials can be organized to match your level and the TAs would be happy to help you to attain your needs. \n\n\n\nThis course is designed to help researchers in visualizing their data through various techniques using R and Quarto. Participants will learn how to create publication-ready visualisations with R. Additionally\, the course also includes introductions to Quarto and dynamic plotting using tools like plotly\, OJS\, etc. The last day of the course includes interactive plotting that can be hosted on a web server\, enabling researchers to share and explore visualizations of their data. \n\n\n\nTopics covered will include: \n\n\n\n\nUsing the language of graphics: ggplot2\n\n\n\nBasic and advanced plotting in ggplot2\n\n\n\nSingle-cell data visualizations with Seurat\n\n\n\nQuarto notebooks and reports\n\n\n\nDynamic plotting with Quarto\n\n\n\nInteractive web apps with Shiny\n\n\n\n\nLearning Outcomes\n\n\n\nUpon completion of this course\, you will be able to: \n\n\n\n\nHandle data in R for visualizations\n\n\n\nFamiliarize with ggplot2 functions and techniques\n\n\n\nCombine different data and/or different plots that are of publication-ready\n\n\n\nCreate interactive documents with Quarto for data exploration and analysis\n\n\n\nWrite your own simple Shiny app in R\n\n\n\n\nEntry requirements\n\n\n\nThe following is a list of skills required for being able to follow the course and complete the exercises: \n\n\n\n\nFamiliarity with R and R Studio\n\n\n\nPlotting using standard R graphics\n\n\n\nParticipants are expected to use their own computers with pre-installed R\, R Studio and different R packages (detailed instructions will be given upon acceptance).\n\n\n\n\nThe course can accommodate a maximum of 20 participants. If we receive more applications\, participants will be selected based on selection criteria\, including (but not limited to) correct entry requirements\, motivation to attend the course\, as well as gender and geographical balance. \n\n\n\nAdditional information\n\n\n\nFor more details\, visit the webpage:\n\n\n\nFor beginner level \n\n\n\nFor advanced level (The content of this page is regularly updated until the course)
URL:https://www.scilifelab.se/event/advanced-data-visualization/
LOCATION:Medicon Village\, Scheelevägen 2\, Lund\, Sweden
CATEGORIES:Course
ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20250514T150000
DTEND;TZID=Europe/Stockholm:20250514T163000
DTSTAMP:20260404T140915
CREATED:20250407T125300Z
LAST-MODIFIED:20250429T082240Z
UID:10001523-1747234800-1747240200@www.scilifelab.se
SUMMARY:How a Community of Practice can support your research
DESCRIPTION:What role does community play in advancing open science? Join us for a webinar exploring how Communities of Practice (CoPs) can support researchers in implementing open science and integrate the FAIR principles into their work\, and thereby enhance the visibility\, reproducibility\, and impact of their research. \n\n\n\nThis session will highlight real-world examples of successful Communities of Practice and the value they bring to researchers and institutions alike. We will also share how these stories have inspired us at SciLifeLab to plan our own Community of Practice\, with the goal of fostering a more collaborative\, open\, and supportive research culture. \n\n\n\n\n\n\n\n\n\n\n\nFeaturing insights from Josh Gottesman (Michael J. Fox Foundation)\, Bogdana-Raluca Huma (Vrije Universiteit Amsterdam & Community of Practice for Open Naturally Occurring Data)\, and Mirjam Walpot (SciLifeLab Data Centre; International Network of Open Science & Scholarship Communities). \n\n\n\nThis event is open to everyone working at or affiliated with a Swedish research institute or university. We welcome all researchers\, educational professionals\, staff\, RDM professionals\, and others with an interest in Open Science\, from all university levels. This event is informal and inclusive\, so feel welcome to join and participate in our interesting discussion. \n\n\n\n \n\n\n\n\n\n \n\n\n\n\nRegister Here\n\n\n\n\n \n\n\n\nPresenters: \n\n\n\n\nBogdana Huma: Associate Professor of Language and Communication\, Vrije University Amsterdam\n\n\n\nJosh Gottesman: Community Director\, Michael J. Fox Foundation\n\n\n\nMirjam Walpot: SciLifeLab Data Centre; Board Member – International Network of Open Science & Scholarship Communities (INOSC)\n\n\n\nSuné Joubert: Project Coordinator (Open Science Communities and Metrics)\, SciLifeLab \n\n\n\n\n \n\n\n\nCo-hosts: \n\n\n\n\nChristopher Erdmann: Head of Open Science\, SciLifeLab\n\n\n\nAlma Nilsson: Project Coordinator (Open Source Software and AI Communities)\, SciLifeLab\n\n\n\nParul Tewatia: Project Coordinator (FAIR Metadata and Semantic Technologies)\, SciLifeLab
URL:https://www.scilifelab.se/event/how-a-community-of-practice-can-support-your-research/
LOCATION:Online event via Zoom
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2025/04/27991d2c-c50a-4fa3-ab05-00b08f9b3db2-1.png
ORGANIZER;CN="SciLifeLab Data Centre":MAILTO:datacentre@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20250515T120000
DTEND;TZID=Europe/Stockholm:20250515T130000
DTSTAMP:20260404T140915
CREATED:20250109T102944Z
LAST-MODIFIED:20250519T083443Z
UID:10001443-1747310400-1747314000@www.scilifelab.se
SUMMARY:Campus Solna Seminar Series: Stefano Papazian
DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 20 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nPhD students that are attending the Campus Solna Seminar lectures will have the opportunity to gain credits. For the syllabus and instructions on how to obtain these credits\, read this document. Please contact your own department at your host University to confirm.See here the full schedule for this semester. \n\n\n\nThis week:\n\n\n\n\n\n\nStefano Papazian\n\n\n\nExposomics Facility – alpha 1 \n\n\n\nNational Facility for Exposomics at SciLifeLab: an infrastructure for your chemical exposome studies \n\n\n\n\n\n\n\n\n\n \n\n\n\n \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page.
URL:https://www.scilifelab.se/event/campus-solna-seminar-series-stefano-papazian-charlotte-stadler/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Community
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/09/IMG_20221103_123412496_HDR2-scaled.jpg
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20250515T150000
DTEND;TZID=Europe/Stockholm:20250515T160000
DTSTAMP:20260404T140915
CREATED:20250409T090239Z
LAST-MODIFIED:20250422T093241Z
UID:10001519-1747321200-1747324800@www.scilifelab.se
SUMMARY:Leveraging Overlay Journals to Link to and Cite Data\, Software\, and Research Outputs
DESCRIPTION:Often\, we rely on publishers and journals to ensure that data\, software\, protocols\, and other related research outputs are curated\, linked\, and made discoverable. In this webinar\, we will explore an approach where we can do all these things as an overlay\, even before or after the publication of your article in a journal. Through the DeSci Publish service\, we will show how you can link and share your data\, software\, and other research files alongside your published articles leveraging the decentralised web and digital object identifiers (DOIs) which make your research outputs globally discoverable and citable. \n\n\n\nJoin us on 15 May 2025\, 15:00 to 16:00 CEST for a webinar with DeSci Publish\, where their team will walk us through the process of using the service to make your research more connected\, impactful\, and recognised.  \n\n\n\nIf you have questions in the meantime\, feel free to reach out to:philipp@desci.com and christopher.erdmann@scilifelab.se \n\n\n\n\nRegister Here\n\n\n\n\n \n\n\n\nPresenters: \n\n\n\nPhilipp Koellinger\, President of the DeSci Foundation \n\n\n\nChristopher Erdmann\, Head of Open Science\, SciLifeLab \n\n\n\nCo-hosts: \n\n\n\nParul Tewatia\, Project Coordinator (FAIR Metadata and Semantic Technologies)\, SciLifeLab \n\n\n\nSuné Joubert\, Project Coordinator (Open Science Communities and Metrics)\, SciLifeLab \n\n\n\nAlma Nilsson: Project Coordinator (Open Source Software and AI Communities)\, SciLifeLab
URL:https://www.scilifelab.se/event/leveraging-overlay-journals-to-link-to-and-cite-data-software-and-research-outputs/
LOCATION:Online event via Zoom
CATEGORIES:Event
ORGANIZER;CN="SciLifeLab Data Centre":MAILTO:datacentre@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20250515T153000
DTEND;TZID=Europe/Stockholm:20250515T170000
DTSTAMP:20260404T140915
CREATED:20250507T101137Z
LAST-MODIFIED:20250507T101807Z
UID:10001541-1747323000-1747328400@www.scilifelab.se
SUMMARY:Balancing Career and Well-being in Science
DESCRIPTION:Navigating your career path while prioritizing mental health can be challenging\, especially in research environments full of high expectations and uncertainty. Join us for an open panel discussion where academic and industry professionals will share personal experiences\, challenges\, and strategies around career development\, motivation\, and well-being in science. \n\n\n\nThis event is part of the Mental Health Week at SciLifeLab and Co-organized by the Coaching in Science Initiative and Proteintech.  \n\n\n\nFree pizza included! Perfect warm-up before the SciLifeLab Pub! \n\n\n\nRegister here\n\n\n\nCSI_Balancing career and well-beingDownload
URL:https://www.scilifelab.se/event/balancing-career-and-well-being-in-science/
LOCATION:Gamma 2 Lunchroom\, SciLifeLab\, Tomtebodavägen 23\, Solna\, Sweden
CATEGORIES:Event
ORGANIZER;CN="Coaching in Science Initiative (CSI)":MAILTO:sami.saarenpaa@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20250520T080000
DTEND;TZID=Europe/Stockholm:20250521T170000
DTSTAMP:20260404T140915
CREATED:20250414T144013Z
LAST-MODIFIED:20250520T071639Z
UID:10001501-1747728000-1747846800@www.scilifelab.se
SUMMARY:Data Management in Life Science
DESCRIPTION:Navigate Repositories\, GDPR\, and Support Networks with Confidence\n\n\n\nDiscover how to effectively manage\, share\, and safeguard your research data through practical guidance from both local and national experts. Engage in discussions on best practices grounded in the FAIR principles and Open Science. \n\n\n\nThis event is co-organized by the SciLifeLab Data Centre\, NBIS\, SciLifeLab Gothenburg\, the Swedish National Data Service (SND)\, and local support teams at the University of Gothenburg and Chalmers. \n\n\n\nWe warmly welcome life science researchers at all career stages—from master’s students to principal investigators—as well as data stewards\, technical staff\, and infrastructure experts based in Gothenburg. \n\n\n\nProgram\n\n\n\nMay 20 – Europa\, Conference Centre Wallenberg\, Medicinaregatan 20A \n\n\n\n10:00 – 10:30 “Fika” and registration \n\n\n\n10:30-12:00 Good Data Management Practices – available services and support\nGood data management practices are essential to increase the scientific and societal impact of your research. By adhering to the Open Science principles\, and by making your research more FAIR – findable\, accessible\, interoperable\, and reusable – you will increase the value of your research work. Doing this is easier than you might think\, and there is a lot of research support available to guide you. \n\n\n\nDuring this presentation you will get to know more about the different research support groups in Gothenburg (University of Gothenburg\, and Chalmers University)\, and the national research support groups (SciLifeLab Data Centre\, NBIS\, and SND)\, who are available to help you during all phases of your research project. \n\n\n\nThis Open Lecture is for everyone working in academia or healthcare\, who works with handling research data or would like to know more about this topic. \n\n\n\n\n12:00 – 17:00 The DDLS Precision Medicine Diagnostics (PMD) Minisymposium 2025 \nPioneering Data-Driven Precision Medicine and Diagnostics\, will take place at the same venue immediately following the Data Management Seminar. We warmly encourage you to take the opportunity to attend both events! \n\n\n\n\nMay 20 – Birgit Thilander\, Academicum\, Medicinaregatan 3 \n\n\n\n13:00 – 16:00 Network Event – Connecting Service Providers\nIf you want to join\, please reach out to us at gothenburg@scilifelab.se. \n\n\n\n\n\n\n\n\nMay 21 – Birgit Thilander\, Academicum\, Medicinaregatan 3 \n\n\n\n9:00-10:00 FAIR breakfast; An open forum for PhD students\, Postdocs and Master Students\n\n\nHere\, young scientists gather for breakfast and discussions on FAIR principles and best practices for research data management. \n\n\n\nFAIR stands for Findable\, Accessible\, Interoperable\, and Reusable — key principles that ensure data is well-organized and reusable. Understanding and applying good data management from the start of a project is not only a requirement for many funders and journals\, but also a valuable asset for researchers throughout their projects and beyond. \n\n\n\n\n\n\n\n\n\n\n\n\n10:15-12:00 Workshop 1 – Data submission to public repositories. \n\n\nBring your laptop! \n\n\n\nMaking the data underlying your research accessible to others—whether openly or with restrictions—is a fundamental part of a FAIR research process. When data are properly described and shared via a trusted data repository\, they can be re-used by you and others\, enabling collaboration and ensuring transparency and long-term preservation. Research data repositories allow data to be shared as open as possible\, as restricted as necessary\, fulfilling FAIR while meeting legal\, ethical\, or contractual requirements. \n\n\n\nThis workshop will give you the why\, where and how of data sharing via repository submission\, including a hands-on exercise. No prior knowledge is required in order to attend this workshop. \n\n\n\nLearning outcomes: \n\n\n\n\nKnow the benefits of data sharing\n\n\n\nKnow how to find a suitable repository for different types of data\n\n\n\nHave experience of a repository submission\n\n\n\n\n\n\n\n\n\n\n\n\n\n13:15-15:00 Workshop 2 – GDPR for life science research\nBring your laptop!  \n\n\n\n\n\nThe General Data Protection Regulation (GDPR) must be followed whenever personal data is processed. This workshop will introduce the fundamental concepts in the regulation and discuss what impact the regulation has on day-to-day research activities in the life sciences. \n\n\n\nLearning outcomes: \n\n\n\n\nHave a basic understanding of what GDPR is and what the purposes the regulation has\n\n\n\nHave a basic understanding of central concepts in GDPR (for example personal data\, special category (“sensitive”) data\, data processing\, data subject\, data controller\, data processor\, lawful grounds and data protection principles)\n\n\n\nUnderstand how GDPR is relevant to life science research (including for example how to prevent re-identification)\n\n\n\nProvide some examples of best practices for how to comply with GDPR\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nRegistration\n\n\n\n\nLate registrations are still possible\, but we cannot guarantee meals for those registering after May 15\, 2025.
URL:https://www.scilifelab.se/event/data-management-in-life-science-2/
LOCATION:Birgit Thilander Lecture Hall\, Medicinaregatan 3\, Göteborg
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2021/03/data_life_cycle_9.png
ORGANIZER;CN="SciLifeLab Gothenburg":MAILTO:gothenburg@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20250520T090000
DTEND;TZID=Europe/Stockholm:20250520T160000
DTSTAMP:20260404T140915
CREATED:20250512T120451Z
LAST-MODIFIED:20250512T152753Z
UID:10001546-1747731600-1747756800@www.scilifelab.se
SUMMARY:Discover the Future of Microscopy: X-Ray\, Electron\, and Correlative Microscopy (ZEISS x UCEM workshop)
DESCRIPTION:A day workshop in collaboration with Umeå Centre for Electron Microscopy (UCEM) \n\n\n\nYou are invited to an upcoming workshop with ZEISS and UCEM\, where an in-depth exploration of the latest advancements in X-Ray Microscopy (XRM)\, Volume Scanning Electron Microscopy (Volume SEM)\, Correlated light and electron microscopy\, as well as image data analysis workflows will be presented. \n\n\n\nDesigned to offer valuable insights into how these cutting-edge tools can enhance your research in the life sciences\, as well as materials sciences\, this workshop will feature invited talks from researchers at Umeå University\, expert presentations\, and a live\, online demonstration of our. \n\n\n\n\nMore information and registration: https://www.zeiss.se/microscopy/l/kampanjer/workshop-x-ray—electron-and-correlative-microscopy.html
URL:https://www.scilifelab.se/event/discover-the-future-of-microscopy-x-ray-electron-and-correlative-microscopy-zeiss-x-ucem-workshop/
LOCATION:Stora Fokusrummet\, KBC\, Linnaeus väg 6\, Umeå\, 90736\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2025/05/xrm_image.jpg
ORGANIZER;CN="UCEM Ume%C3%A5":MAILTO:hussein.haggag@umu.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20250520T120000
DTEND;TZID=Europe/Stockholm:20250520T130000
DTSTAMP:20260404T140915
CREATED:20250512T104320Z
LAST-MODIFIED:20250512T152819Z
UID:10001545-1747742400-1747746000@www.scilifelab.se
SUMMARY:Umeå seminar series: Solid-state NMR: Molecular insight into complex materials ranging from cancer biopsies to membranes\, biopolymers\, plants and cells to novel material
DESCRIPTION:Presenter: Tobias Sparrman\, Staff scientist\, NMR core facility\, Umeå University \n\n\n\nWhat is solid-state NMR and how can that help you?How does solid state NMR differ from liquid state – strengths and weaknesses?   \n\n\n\nAn introduction to the national NMR infrastructure at KBC with focus on solids and semi-solids. The basic concept of Magic Angle Spinning and examples on how NMR can be applied to a vast range of complex material e.g. in tissue metabolomics\, environment\, ecology and archeology\, but also to obtain detailed information on biopolymers like spider silk\, cellulose\, lignin and even membranes\, and not least investigate new technical materials with the use of 7Li\,19F\, 31P\, 27Al\, 29Si NMR.  \n\n\n\nWebpage: NMR Core facility \n\n\n\n\nRegister by Friday\, 16 May at 13:30\, to reserve your free lunch\, or join on Zoom (registration is not required): https://www.umu.se/en/research/groups/scilifelab/scilifelab-site-umea–kbc-infrastructure-seminar-series/ \n\n\n\nOn Zoom: https://umu.zoom.us/j/69390567429
URL:https://www.scilifelab.se/event/umea-seminar-series-solid-state-nmr-molecular-insight-into-complex-materials-ranging-from-cancer-biopsies-to-membranes-biopolymers-plants-and-cells-to-novel-material/
LOCATION:Glasburen Seminar Room\, Chemical Biological Centre (KBC) Building\, Umeå University\, Umeå\, 901 87\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2024/09/21A5642-scaled.jpg
ORGANIZER;CN="SciLifeLab Ume%C3%A5":MAILTO:umea@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20250520T120000
DTEND;TZID=Europe/Stockholm:20250520T170000
DTSTAMP:20260404T140915
CREATED:20250221T095041Z
LAST-MODIFIED:20250514T144157Z
UID:10001493-1747742400-1747760400@www.scilifelab.se
SUMMARY:Pioneering Data-Driven Precision Medicine and Diagnostics
DESCRIPTION:DDLS Precision Medicine Diagnostics (PMD) Minisymposium 2025 \n\n\n\nWe are delighted to invite doctoral students\, postdoctoral researchers\, clinicians\, and professionals at all career stages to the DDLS PMD Minisymposium 2025 – an interdisciplinary event designed to showcase cutting-edge research and foster collaborative innovation in precision medicine and diagnostics. Join us in Gothenburg for an engaging and insightful experience. \n\n\n\nEvent Details: \n\n\n\nDate: May 20\, 2025 \n\n\n\nLocation: Hall Europa\, Wallenberg Conference Center\, Gothenburg \n\n\n\nCapacity: 100 participants \n\n\n\nAt this exclusive minisymposium\, you will have the opportunity to: \n\n\n\n\nEngage with Fellow Researchers: Hear from experts in data-driven life science and precision medicine through keynote presentations and visionary talks.\n\n\n\nParticipate in Interactive Sessions: Contribute to dynamic panel discussions addressing current challenges and future directions\, and experience rapid-fire talks by early-career researchers and postdoctoral fellows.\n\n\n\nShowcase and Discover Innovations: Explore groundbreaking research at our poster session that bridges the gap between clinical practice and translational science.\n\n\n\nNetwork and Collaborate: Connect with peers\, senior researchers\, and clinical experts to foster collaborative projects and exchange innovative ideas.\n\n\n\n\nThis event is tailored for professionals passionate about advancing precision medicine and diagnostics through data integration and interdisciplinary research. Whether you are leading groundbreaking projects or embarking on your scientific journey\, the DDLS PMD Minisymposium offers a platform to inspire\, innovate\, and shape the future of healthcare. \n\n\n\nRegister now to secure your place and join us in exploring new horizons in precision medicine and diagnostics. \n\n\n\nCollaboration and outreach flash talks \n\n\n\n2 min\, 1-2 slides max.\, do not present your research\, but present your needs or offers (are you looking for -or- can offer a specific kind of data or expertise\, are you looking for a tool to solve a specific -or- can you offer a tool to others and are looking for testers or users) \n\n\n\nRegistration\n\n\n\nSpeakers\n\n\n\n\nPaulo Czarnewski\, Precisium AI\n\n\n\nSara Hansson\, AstraZeneca\n\n\n\nLars Klareskog\, Senior Professor of Rheumatology\, Karolinska Institutet\n\n\n\nKimmo Kartasalo\, Assistant Professor\, DDLS Fellow\, Karolinska Institutet\n\n\n\nAntonio Lentini\, Assistant Professor\, DDLS Fellow\, Linköping University\n\n\n\nAbhishek Niroula\, Assistant Professor\, DDLS Fellow\, University of Gothenburg\n\n\n\nRichard Rosenquist Brandell\, Genomic Medicine Sweden\, Karolinska Institutet\n\n\n\n\nProgram\n\n\n\n12:00Registration & Poster set-upWallenberg Conference Center\, Gothenburg12:10Lunch Served in the restaurant Norden on the second floor13:00Scientific presentationsModerators: Annika Polster\, Qiaoli WangWelcome and Introduction to Precision Medicine and Diagnostics Research AreaJanne Lehtiö\, SciLifeLab/Karolinska Institutet13:10Use of Sweden’s national quality of care registers and affiliated biobanks for  large scale data-driven Precision Medicine researchLars Klareskog\, Karolinska Institutet13:35Identifying new markers of CH and predicting risk of hematologic malignanciesAbhishek Niroula\, SciLifeLab/University of Gothenburg13:50Foundation Models – A Panacea for Artificial Intelligence in Pathology?Kimmo Kartasalo\, SciLifeLab/Karolinska Institutet14:05Flash TalksModerators: Marcel Tabier and Muhammad Arif14:25Coffee Break with Matchmaking & Poster session15:10Scientific presentationsModerators: Avlant Nilsson\, Fulya Taylan15:10Harnessing atlas-level data for precision medicine applicationsPaulo Czarnewski\, Precisium AI15:35Transcriptional regulation of aneuploidyAntonio Lentini\, SciLifeLab/Linköping University16:00Implementing Precision Medicine in Drug DevelopmentSara Hansson\, Astra Zeneca16:30Precision Omics Initiative Sweden (PROMISE) – the design phaseRichard Rosenquist Brandell\, Genomic Medicine Sweden/Karolinska Institutet16:55Wrap-upJanne Lehtiö\, SciLifeLab/Karolinska Institutet
URL:https://www.scilifelab.se/event/pioneering-data-driven-precision-medicine-and-diagnostics/
LOCATION:Europasalen\, Konferenscentrum Wallenberg\, Gothenburg\, Medicinaregatan 20\, Göteborg\, 413 90\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2025/03/PM4_BG.png
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20250520T123000
DTEND;TZID=Europe/Stockholm:20250520T163000
DTSTAMP:20260404T140915
CREATED:20250324T085757Z
LAST-MODIFIED:20250508T145854Z
UID:10001510-1747744200-1747758600@www.scilifelab.se
SUMMARY:PacBio Revio Launch at Clinical Genomics Uppsala
DESCRIPTION:Join us for a series of presentations and networking to explore how the Revio system can advance your most challenging clinical and translational research questions. \n\n\n\nWelcome to the official launch of the PacBio Revio at Clinical Genomics Uppsala! \n\n\n\nProgram\n\n\n\nPacBio Event Uppsala_Flyer_NEW1Download\n\n\n\n \n\n\n\nRegistration\n\n\n\nThis event is a collaboration between PacBio and Clinical Genomics Uppsala 
URL:https://www.scilifelab.se/event/pacbio-revio-launch-at-clinical-genomics-uppsala/
LOCATION:Rudbecksalen\, Rudbecklaboratoriet\, Dag Hammarskjöldsväg 20\, Uppsala\, 75237
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2024/03/Hemsida-Rudbeck-frontbild.jpeg
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20250520T130000
DTEND;TZID=Europe/Stockholm:20250520T143000
DTSTAMP:20260404T140915
CREATED:20250514T051047Z
LAST-MODIFIED:20250514T081913Z
UID:10001550-1747746000-1747751400@www.scilifelab.se
SUMMARY:Beta building Walkabout
DESCRIPTION:SciLifeLab and Campus Solna Leadership\, and Akademiska hus invites you to a walkabout in the Beta building on May 20.  Everyone is welcome to experience the “before” of the exciting and ongoing project to incorporate the Beta Building into SciLifeLab\, creating what can be called SciLifeLab Campus Solna v 3.0.  \n\n\n\nBy consolidating the Beta building into our campus\,  50% more space is gained\, a requisite to meet future challenges and to continue as an internationally recognised and impactful research facility dedicated to deciphering life processes at the molecular level.  \n\n\n\nProgram\n\n\n\n13.00Gathering and Coffee13.10Welcoming words\, Per Ljungdahl13.15Future Perspectives\, Jan Ellenberg13.20Akademiska Hus gives information13.30The doors of Beta will open14.30The doors of Beta will close\n\n\n\n\n\nWalkabout_Flyer_Download
URL:https://www.scilifelab.se/event/beta-building-walkabout/
LOCATION:Delta\, Campus Solna\, Tomtebodavägen 23a\, Solna
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2025/05/Betabyggnad-scaled.png
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20250520T151500
DTEND;TZID=Europe/Stockholm:20250520T161500
DTSTAMP:20260404T140915
CREATED:20250403T052034Z
LAST-MODIFIED:20250505T120258Z
UID:10001520-1747754100-1747757700@www.scilifelab.se
SUMMARY:[Spotlight seminar] Investigating the regulatory impact of rare non-coding somatic mutations in cancer
DESCRIPTION:Spotlight seminar series proudly presents Lude Franke\, Professor of functional genomics\, University Medical Centre Groningen\, The Netherlands \n\n\n\n\n\n\n\nAbstract\n\n\n\nBoth germline and somatic variation play an important role in cancer. In the past years a lot of progress has been made in the identification of germline variants that confer cancer risk\, and a large number of somatic driver mutations have now been found. Here\, we set out to study the role of non-coding somatic mutations in cancer and studied whole-genome sequence data of 25\,000 cancer patients where we employed sequence-based models to identify hundreds of non-coding regions that are enriched for activating or repressing mutations. We subsequently studied how these non-coding somatic mutations cause disease and observed these mutations are related to known somatic driver genes ad germline risk variants  through when employing gene regulatory networks. I will discuss how such gene regulatory networks can be reconstructed using trans-eQTL data in 43\,000 invidiuals.  \n\n\n\nBiography\n\n\n\nLude Franke develops and applies computational methods to understand the downstream molecular consequences of genetic risk factors. We studied the effect of somatic copy number alterations on gene expression levels (Fehrmann et al\, Nature Genetics 2015) and studied the effect of genetic single-nucleotide polymorphism on methylation (Bonder et al\, Nature Genetics 2017) and gene expression (i.e. expression quantitative trait loci)\, both in blood using bulk data (Zhernakova et al\, Nature Genetics 2017 and Vosa et al\, Nature Genetics 2021) and single-cell data (Van der Wijst\, Nature Genetics 2018). Recently\, we did this in brain (De Klein\, Nature Genetics 2023). We lead the eQTLGen and single-cell eQTL consortia (see eQTLGen.org)\, where we use federated meta-analyses approaches to generate comprehensive maps how genetic variation is exerting cell-type and context-specific effects on gene expression\, with the aim to help identify and validate drug targets.
URL:https://www.scilifelab.se/event/investigating-the-regulatory-impact-of-rare-non-coding-somatic-mutations-in-cancer/
LOCATION:Gamma 2 Lunchroom\, SciLifeLab\, Tomtebodavägen 23\, Solna\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2023/10/Campus-solna-seminar-picture.jpg
ORGANIZER;CN="Spotlight Seminar Series":MAILTO:events@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20250521T090000
DTEND;TZID=Europe/Stockholm:20250521T150000
DTSTAMP:20260404T140915
CREATED:20250425T140943Z
LAST-MODIFIED:20250429T114849Z
UID:10001536-1747818000-1747839600@www.scilifelab.se
SUMMARY:Meet the Experts: Drug Development Drop-In with OligoNova/SciLifeLab DDD
DESCRIPTION:Accelerate Your Drug Discovery Research with OligoNova & SciLifeLab DDD\n\n\n\nOligoNova’s mission is to transform cutting-edge academic research in therapeutic oligonucleotides into innovative medicines that address unmet medical needs. \n\n\n\nWe provide: \n\n\n\n\nIndustry-standard infrastructure\n\n\n\nA dedicated team of drug discovery experts\n\n\n\nStrategic guidance to help you advance your asset toward preclinical proof of concept molecule\, supported by a robust\, validated data package for potential further development and commercialization. \n\n\n\n\nWhat Can You Explore or Get Support With?\n\n\n\nAt this drop-in event\, you can learn more about: \n\n\n\n\nAvailable support for your research through OligoNova and SciLifeLab DDD\n\nDrug development programs and how to get involved\n\n\n\nService projects – including assays\, instrumentation\, and synthesis\n\n\n\nConsultation meetings – from early ideas to strategic planning\n\n\n\n\n\nApplication processes – for various types of drug development support\n\n\n\nMaster’s thesis opportunities\n\n\n\nGeneral questions about drug development\n\n\n\nAccessing and using OligoNova’s infrastructure\n\n\n\n\nWhether you’re curious\, ready to apply\, or just want to chat about your research – you’re most welcome to stop by! \n\n\n\nMore information can be also be found at the webpages of OligoNova\, OligoNova Hub and the SciLifeLab DDD platform. \n\n\n\n\n\nWarm regards\,The OligoNova Team
URL:https://www.scilifelab.se/event/meet-the-experts-drug-development-drop-in-with-oligonova-scilifelab-ddd/
LOCATION:SciLifeLab Gothenburg Office Hub\, Medicinaregatan 3\, Gothenburg\, 41390\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2025/04/Oligionova-logotyp-2024-RGB.png
ORGANIZER;CN="SciLifeLab Gothenburg":MAILTO:gothenburg@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20250523T090000
DTEND;TZID=Europe/Stockholm:20250523T100000
DTSTAMP:20260404T140915
CREATED:20250514T044404Z
LAST-MODIFIED:20250516T131448Z
UID:10001549-1747990800-1747994400@www.scilifelab.se
SUMMARY:From Algorithms to the Clinic: How we are bringing digital technologies into clinical practice
DESCRIPTION:Marco Perez\, an Associate Professor at Stanford University \n\n\n\nBiography\n\n\n\nDr. Marco Perez\, an Associate Professor at Stanford University\, focuses on understanding the causes of cardiovascular disease and the role of digital health technologies in improving cardiovascular health. He has been involved in landmark studies\, including the Women’s Health Initiative and the Apple Heart Study\, which validated smartwatch detection of atrial fibrillation. Currently\, he serves as the Principal Investigator of the Central Coordinating Centre for the REACT-AF clinical trial\, which explores a “pill-in-the-pocket” anticoagulation approach for atrial fibrillation using smartwatches.  \n\n\n\n\n\n\n\nAbstract\n\n\n\nThe availability of digital tools in medicine is expanding rapidly. More than ever before\, we have access to large datasets and machine learning tools that can help us decipher this data. In addition\, our patients are being monitored nearly continuously with consumer devices that are connected and available to us as a tool for research and health care delivery. We will discuss our experience with how we are using these tools in clinical trials\, what we can learn from these studies and where we need to go next to make the most significant impact. \n\n\n\nAbout Clinical Talks\n\n\n\nClinical Talks returns with a new season! \n\n\n\nAfter seven successful seasons and over seventy dedicated speakers\, we are excited to continue showcasing the contributions of our diverse clinical\, academic\, and industry life science community. This season will feature ten insightful talks following our well-established format. \n\n\n\nThe overarching theme is “How to Achieve Feasible Implementation.” Sessions will be heldmonthly on Fridays from 09:00 a.m. to 09:30 a.m. via Zoom\, with occasional exceptions. Each talk will be followed by an engaging Q&A session\, moderated by standing host Rikard Fred and a guest moderator with subject matter expertise to enrich the discussion. \n\n\n\nIn today’s rapidly evolving post-pandemic landscape\, exploring how academic\, clinical\, and industry research\, combined with technological advancements\, can drive practical and sustainable solutions is crucial. Join us for an opportunity to gain fresh insights\, expand your knowledge\, and connect with experts shaping the future of Life Sciences! \n\n\n\nClinical Talks are organised by SciLifeLab. \n\n\n\nRegister Here\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n“From Algorithms to the Clinic: How we are bringing digital technologies into clinical practice”
URL:https://www.scilifelab.se/event/from-algorithms-to-the-clinic-how-we-are-bringing-digital-technologies-into-clinical-practice/
LOCATION:Online event via Zoom
CATEGORIES:Event
ORGANIZER;CN="Clinical Talks":MAILTO:precisionmedicine@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20250523T100000
DTEND;TZID=Europe/Stockholm:20250523T110000
DTSTAMP:20260404T140915
CREATED:20250510T161536Z
LAST-MODIFIED:20250510T161537Z
UID:10001544-1747994400-1747998000@www.scilifelab.se
SUMMARY:Seqera AI: How we're using LLMs and Agents with Nextflow code.
DESCRIPTION:Phil Ewels\, Seqera \n\n\n\nNBIS and SciLifeLab Data Centre arrange an open SciLifeLab AI Seminar Series aimed at knowledge-sharing about Artificial Intelligence and applications in the Life Science community. The seminar series is open to everyone. The seminar is run over Zoom on the third Friday of the month during academic terms\, typically between 10 and 11 am\, with approx. 45 min presentation and 15 min discussion. \n\n\n\nAbstract \n\n\n\n​LLMs are fast becoming an indispensable tool for anyone writing software. But how well do they cope with Nextflow pipelines? Hear how Seqera is building a suite of AI tools that can kickstart Nextflow developer experience and integrate deeply with bioinformaticians’ tool chains. Learn how we’re going beyond simple chat interfaces\, with agentic tooling that can fast-track edits without sacrificing accuracy and reproducibility.
URL:https://www.scilifelab.se/event/seqera-ai-how-were-using-llms-and-agents-with-nextflow-code/
LOCATION:Online event via Zoom
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20250526T083000
DTEND;TZID=Europe/Stockholm:20250526T160000
DTSTAMP:20260404T140915
CREATED:20250411T132705Z
LAST-MODIFIED:20250411T133122Z
UID:10001529-1748248200-1748275200@www.scilifelab.se
SUMMARY:EATRIS Sweden in the Spotlight Symposium
DESCRIPTION:AI in healthcare – opportunities\, challenges and ethical considerations \n\n\n\nThe “EATRIS Spotlight Programme” highlights the scientific excellence and capacities of its member countries while enhancing visibility at both a national and European level. EATRIS Sweden’s term as the spotlight country will come to an end in May 2025\, and the EATRIS Sweden team is inviting all EATRIS members to join them at a closing symposium titled “AI in healthcare – opportunities\, challenges and ethical considerations”. \n\n\n\nTo register\, visit the EATRIS webpage. \n\n\n\nPreliminary Programme\n\n\n\n8:30 – 9:00Registration9:00Welcome – Pontus Aspenström\, National Director EATRIS SwedenAnton Ussi\, Operations & Finance Director\, EATRIS C&S\n\n\n\nSession I \n\n\n\n9:10Ola Spjuth\, Uppsala University\, SciLifeLab – SciLifeLab and AI: Perspectives and strategies9:35Sven Nelander\, Uppsala University – AI strategies to combat brain tumor progression10:00Claes Lundström\, Linköping University – The interplay between AI and human expertise in diagnostic imaging10:25 – 11:00Coffee\n\n\n\nSession II \n\n\n\n11:00Mattias Rantalainen\, Karolinska Institutet – TBD11:25Julián Prieto and Carolina de la Pinta\, IRYCIS\, Spain – Trustworthy predictive systems in translational medicine11:50Stella Riad\, RISE – Beyond the hype: Practical AI applications and challenges in healthcare12:15 – 13:15Lunch\n\n\n\nSession III \n\n\n\n13:15Johan Hartman\, Stratipath\, Karolinska Institutet – Implementation of AI-based precision pathology in routine healthcare13:40Jason Tucker\, Institute for Futures Studies & AI Policy Lab @Umeå University  – Why we should care about the global politics behind AI in healthcare14:05Santa Slokenberga\, Uppsala University – Legal Preconditions for AI in Healthcare: §Navigating Compliance and Operalization14:30 – 15:00Coffee\n\n\n\nSession IV \n\n\n\n15:00Jessica Nihlén Fahlkvist\, Uppsala University – AI Ethics and Medical Research15:25Luis Mendes\, EATRIS Digital Transformation Expert Group – AI and Diabetic Retinopathy: Challenges and Opportunities for Better Diabetes Care15:50TBA16:15Concluding remarks16:30End of meeting
URL:https://www.scilifelab.se/event/eatris-sweden-in-the-spotlight-symposium/
LOCATION:Life City\, Solnavägen 3H\, Stockholm\, 113 63
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20250526T090000
DTEND;TZID=Europe/Stockholm:20250526T170000
DTSTAMP:20260404T140915
CREATED:20250507T092724Z
LAST-MODIFIED:20250523T065343Z
UID:10001540-1748250000-1748278800@www.scilifelab.se
SUMMARY:SciLifeLab Uppsala Spring Mini-Symposium
DESCRIPTION:We’re thrilled to invite you to our first-ever SciLifeLab and DDLS Fellow/Alumni organized SciLifeLab Uppsala Spring Mini-Symposium in Navet\, BMC\, on the 26th of May. A full day dedicated to inspiring scientific talks\, meaningful interactions\, and collaborative discussions. \n\n\n\nJoin us as we explore how shared science can help strengthen connections across departments and universities. (Spots are limited to 90p.) \n\n\n\nPhD students and postdocs are especially encouraged to attend – it’s an excellent opportunity to expand your network and spark future collaborations! \n\n\n\nPhD/Postdoc\, you are welcome to present a poster. Reusing a recent poster is OK! \n\n\n\n \n\n\n\nWelcome! \n\n\n\nThe organizing team \n\n\n\nWojciech Michno\, Luisa Hugerth and Marcel Tarbier \n\n\n\nRegistration\n\n\n\nSchedule SciLifeLab Uppsala Spring Mini-Symposium v2Download
URL:https://www.scilifelab.se/event/scilifelab-uppsala-spring-mini-symposium/
LOCATION:Navet\, SciLifeLab Uppsala\, SciLifeLab Uppsala\, BMC C11\, Husargatan 3\, Uppsala\, 75237\, Sweden
CATEGORIES:Community
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2020/05/w2a5147-scaled.jpg
ORGANIZER;CN="SciLifeLab Uppsala Fellows":MAILTO:events@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20250527T101500
DTEND;TZID=Europe/Stockholm:20250527T120000
DTSTAMP:20260404T140915
CREATED:20250403T045558Z
LAST-MODIFIED:20250403T045704Z
UID:10001511-1748340900-1748347200@www.scilifelab.se
SUMMARY:The future of Open Science in Sweden
DESCRIPTION:Sweden has been at the forefront of the Open Science movement\, with national policies promoting open access to research publications\, FAIR data principles\, and new approaches to research assessment. However\, challenges remain in fully integrating Open Science into funding structures\, career evaluations\, and institutional practices. \n\n\n\n\n\nJoin us for an insightful roundtable on the future of Open Science implementation in Sweden! Richard Williams\, a postdoctoral researcher in the philosophy of Open Science at the Technical University of Munich\, will open the discussion with a critical examination of the Open Science movement. Following this\, Angeliki Adamaki – Lund University Open Science-champion and co-founder of Open Science Community Lund -\, Sanna Isabel Ulfsparre – analyst at Vetenskapsrådet specializing in Open Science and research data -\, and Stefan Ekman – senior advisor at the Swedish National Data Service (SND) – will explore key challenges\, opportunities\, and next steps for Open Science in Sweden. \n\n\n\nPresenters: \n\n\n\nRichard Williams\, Technical University of Munich \n\n\n\nAngeliki Adamaki\, Lund University \n\n\n\nSanna Isabel Ulfsparre\, Vetenskapsrådet \n\n\n\nStefan Ekman\, Swedish National Data Service \n\n\n\nDiscussion leaders: \n\n\n\nIneke Luijten\, SciLifeLab Training Hub \n\n\n\nElin Kronander\, National Bioinformatics Infrastructure Sweden  \n\n\n\nDon’t miss the opportunity to gain fresh insights and contribute to the conversation!  \n\n\n\nRegister Here
URL:https://www.scilifelab.se/event/the-future-of-open-science-in-sweden/
LOCATION:Online event via Zoom
CATEGORIES:Event
ORGANIZER;CN="Training Hub":MAILTO:traininghub@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20250530T100000
DTEND;TZID=Europe/Stockholm:20250530T123000
DTSTAMP:20260404T140915
CREATED:20250416T111259Z
LAST-MODIFIED:20250416T114457Z
UID:10001532-1748599200-1748608200@www.scilifelab.se
SUMMARY:Nobel symposium public lectures
DESCRIPTION:Welcome to attend the Nobel Symposium Public Lectures. Free entrance\, no registration required. Read more about the prominent Speakers below. \n\n\n\n”Can we bring back the woolly mammoth?” \n\n\n\nProf. Beth Shapiro\, Colossal Bioscience\, USA  \n\n\n\n”The taming of the horse” \n\n\n\nProf. Ludovic Orlando\, Centre for Anthropobiology and Genomics of Toulouse\, France \n\n\n\n \n\n\n\nDate: May 30\, 2025 \n\n\n\nTime: 10:00-12:30 \n\n\n\nVenue: Aula Magna\, Stockholm University\, Frescativägen 6\, Stockholm \n\n\n\nOrganizers: Centre for Palaeogenetics\, SciLifeLab Ancient DNA unit\, Uppsala University Human Evolution research program \n\n\n\nBeth Shapiro\, Ph.D\nBeth Shapiro is an evolutionary biologist who specializes in the genetics of ice age animals and plants. As Professor of Ecology and Evolutionary Biology at UC Santa Cruz and HHMI Investigator\, Beth uses DNA recovered from bones and other remains to study how species evolved through time and how human activities have affected and continue to affect this dynamic process. Her work focuses on organisms ranging from influenza to mammoths\, asking questions about domestication\, admixture\, speciation\, and pathogen evolution. Her current work develops techniques to recover increasingly trace amounts of DNA such as from environmental and forensic samples. A 2009 MacArthur Fellow\, Beth is also an award-winning popular science author and communicator who uses her research as a platform to explore the potential of genomic technologies for conservation and medicine. \n\n\n\n\nProf. Ludovic Orlando\nLudovic is a former student from the Ecole Normale Supérieure of Lyon (1996-2000)\, one of the top-5 French universities. First trained as a molecular biologist\, he soon became interested in applying computational techniques to DNA sequence data. He graduated in molecular genetics from the Univ of Lyon\, France in 2003\, twenty years after the first ancient DNA molecule was sequenced. He was appointed as a permanent Associate Professor at ENS Lyon\, where he lectured and performed research between 2005 and 2010. He started his own research group in 2010 at the Centre for GeoGenetics\, Univ of Copenhagen\, Denmark\, where he was appointed as a full Professor in ‘Molecular Archaeology’ until 2020. He became a CNRS research director in 2016. He founded the Centre for Anthropobiology and Genomics (CAGT) in 2020\, and as acted as its director since. He is also the head of the AnimalFarm CNRS International Research Programme\, grouping together 4 leading ancient DNA labs at Univ of Oxfort\, Trinity College Dublin\, and LMU Munich\, all focused on the reconstruction of the domestication history of animal domestic species. \n\n\n\nAmongst his early career achievements feature (1) the sequencing of the first Middle Pleistocene genome\, (2) the characterization of the first ancient epigenome\, and (3) the identification of the horse and donkey domestication homelands. \n\n\n\nHe has been part of several organizing and scientific boards of international meetings\, including for the Society of Molecular Biology and Evolution\, the International Symposium on Biomolecular Archaeology\, the International Union for Quaternary Research and the International Union of the Protohistoric and Prehistoric Sciences. He has been an Academic Editor and/or Editor-in-Chief for multiple scientific journals\, including PLoS One\, Scientific Reports\, Peer J and STAR. He published 200+ scientific research articles and several books. He took part of several national research committees\, including for the French National Research Agency (ANR) (2012 and 2013)\, the ‘Institut Universitaire de France’ (2015 and 2016)\, INRAE Genomics (2020-) and the Scientific Advisory Board of France Génomique (2021-). His research has received multiple national and international funding\, including from multiple Marie-Curie programmes\, and two prestigious grants from the European Research Council (CoG PEGASUS\, and SyG Horsepower). He was awarded the CNRS Silver Medal in 2023 « for the originality\, quality\, and importance of (his) work\, which is recognised at national and international level.  \n\n\n\n\n\n\n\n\nflyer_30may_bvDownload
URL:https://www.scilifelab.se/event/nobel-symposium-public-lectures/
LOCATION:Aula Magna\, Frescativägen 6\, Stockholm\, 114 18 Stockholm\, Sweden
CATEGORIES:Event
ORGANIZER;CN="Ancient DNA Unit at SciLifeLab":MAILTO:magnus.lundgren@scilifelab.uu.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20250530T140000
DTEND;TZID=Europe/Stockholm:20250530T170000
DTSTAMP:20260404T140915
CREATED:20250508T142433Z
LAST-MODIFIED:20250519T145747Z
UID:10001543-1748613600-1748624400@www.scilifelab.se
SUMMARY:Nano-electrokinetic transcriptomics empowers the phenotyping of single cells
DESCRIPTION:Seminar with Prof. Hirofumi Shintaku\, Kyoto University\, Japan \n\n\n\nHost: Ian Hoffecker\, SciLifeLab \n\n\n\nregistration\n\n\n\nYou can also follow the meeting via Zoom. \n\n\n\nAbstract \n\n\n\nNanopore electroporation uses nanoscale structures to create focused electric fields\, which form pores in lipid bilayers with low invasiveness. We here discuss the biophysics of the pore formation that depends on the cell surface tension and introduce an approach that leverages nanopore electroporation and single-cell RNA-sequencing to parallelly profile cell surface tension and gene expression\, electroporation-based lipid-bilayer assay for cell surface tension (ELASTomics). We show that ELASTomics dissects the heterogeneity in cellular mechanics and uncovers the regulatory mechanism in cancer malignancy\, cell differentiation\, and cellular senescence. \n\n\n\n\n\n\n\nBiography \n\n\n\nDr. Hirofumi Shintaku is a Professor at the Institute for Life and Medical Sciences (LiMe)\,  Kyoto University. \n\n\n\nHe studied Mechanical Engineering at Kyoto University in Japan\, receiving his undergraduate\, master’s\, and Ph.D. degrees in 2002\, 2004\, and 2006\, respectively. From 2006-2012\, he worked as a Research Associate in the Department of Mechanical Science and Bioengineering at Osaka University in Japan.  From 2012 to 2018\, he worked as an Assistant Professor in the Department of Micro Engineering at Kyoto University. From 2012 to 2015\, he was a visiting scholar at Stanford University in the United States and collaborated with Professor Juan G. Santiago. From 2018 to 2025\, he worked as a RIKEN Hakubi Team leader at RIKEN\, where he initiated his own research group and has pioneered single-cell RNA-sequencing approaches\, SINC-seq (Abdelmoez et al. Genome Biol 2018\, Oguchi et al. Sci Adv 2021)\, ELASTomics (Shiomi et al. Nat Commun 2024)\, and live embryonic transcriptomics (Torii et al. under review). Since 2023\, he has been directing the Nano Bioengineering Laboratory at LiMe\, Kyoto University. \n\n\n\nHe was awarded the Best Paper Award from JSAEM (2006)\, the IIP Division Award for Young Engineer from JSME(’09)\, JSME Young Engineers Award (2010)\, Osaka University Achievement Award (2011)\,  Certificate of Merit for Micro-Nano Science and Technology Division of JSME (’14)\, the Micro-Nano Engineering Excellent Paper Certificate of Merit (2022)\, Nakatani Encouragement Award (2025)\, RIKEN Biho Award (2025). \n\n\n\nHis current research activities include developing microfluidic systems for single-cell analyses and measurement techniques of fluid dynamics in nano/micro-confined spaces.
URL:https://www.scilifelab.se/event/nano-electrokinetic-transcriptomics-empowers-the-phenotyping-of-single-cells/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2025/05/DSC7629-scaled.jpg
ORGANIZER;CN="Ian Hoffecker":MAILTO:ian.hoffecker@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20250602T151500
DTEND;TZID=Europe/Stockholm:20250602T161500
DTSTAMP:20260404T140915
CREATED:20250514T083040Z
LAST-MODIFIED:20250514T083043Z
UID:10001551-1748877300-1748880900@www.scilifelab.se
SUMMARY:[The Svedberg seminar] - The world of viruses and its evolution through the lens of metagenomics and metatranscriptomics
DESCRIPTION:Eugene V. KooninHead of Evolutionary Genomics Group at the National Center for Biotechnology Information (NCBI) at the NIH\, USA \n\n\n\n \n\n\n\n \n\n\n\nBio\n\n\n\nEugene V. Koonin is an NIH Distinguished Investigator\, the leader of the Evolutionary Genomics Group at the National Center for Biotechnology Information (NCBI) at the NIH. He graduated from Moscow State University in 1978 and was awarded a PhD in Virology by the same university in 1983. He joined the NIH in 1991 and became a Senior Investigator in 1996 and a Distinguished Investigator in 2019. Dr. Koonin’s research focuses on genome evolution\, especially in microbes and viruses\, host-parasite coevolution\, and more specifically\, functions and evolution of antivirus defense systems\, in particular\, CRISPR-Cas. Dr. Koonin is the author of the concept and implementation of Clusters of Orthologous Genes which are central to comparative and evolutionary genomics. He also develops mathematical models of various evolutionary process and works on general theory of evolution based on physical principles. Dr. Koonin has published about 1100 research and review papers\, many in premier scientific journals\, that have been cited more than 265\,000 times. He is also the author of the 2011 book “The Logic of Chance” which outlines a new synthesis of Evolutionary Biology. His h-index is 246 according to Google Scholar. Dr Koonin is a member of the National Academy of Sciences of the USA\, National Academy of Medicine of the USA\, American Academy of Arts and Sciences\, and American Academy of Microbiology\, a Foreign Associate of the European Molecular Biology Organization and Academia Europea\, and a Doctor Honoris Causa of Universite Aix-Marseille\, Wageningen University\, Weizmann Institute of Science and University of Haifa. \n\n\n\nThe world of viruses and its evolution through the lens of metagenomics and metatranscriptomics\n\n\n\nViruses and virus-like mobile genetic elements are ubiquitous parasites or symbionts of all cellular life forms and the most abundant biological entities on earth. The recent\, unprecedented advances of comparative genomics\, metagenomics and metatranscriptomics have led to the discovery  of diverse novel groups of viruses and a rapid expansion of the chartered region of the virosphere. These discoveries provide for a vastly improved understanding of the evolutionary relationships within the virosphere. Arguably\, we are approaching the point when the global architecture of the virus world can be outlined in its entirety\, and the key evolutionary events in each of its domains can be reconstructed. I will present such an outline of the global organization of the virosphere and the corresponding megataxonomy\, including 7 evolutionarily coherent virus realms\, that has been recently approved by the International Committee on Taxonomy of Viruses\, as well as additional candidate major taxa including new realms. The expansion of the prokaryotic virosphere that now includes many groups of viruses\, particularly\, those with RNA genomes\, previously thought to be eukaryote-specific\, will be emphasized. I will further discuss the position of viruses within the wider space of replicators and the recent dramatic expansion of the “alternative virosphere” that includes viroids and diverse viroid-like viruses that seem to have evolved on multiple\, independent occasions. \n\n\n\n \n\n\n\n\n\n\n\nHost: Peter Bozhkov peter.bozhkov@slu.se
URL:https://www.scilifelab.se/event/the-svedberg-seminar-eugene-koonin/
LOCATION:BMC Room C8:301\, Husargatan 3\, Uppsala\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/02/Picture1-The-Svedberg.png
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20250605T110000
DTEND;TZID=Europe/Stockholm:20250605T120000
DTSTAMP:20260404T140915
CREATED:20250527T104027Z
LAST-MODIFIED:20250603T071638Z
UID:10001559-1749121200-1749124800@www.scilifelab.se
SUMMARY:Fragmentomics as a Pancancer Biomarker in Liquid Biopsies
DESCRIPTION:Clinical Genomics Webinar Series\n\n\n\nClinical Genomics Örebro is hosting this webinar as part of the webinar series by the Clinical Genomics Platform \n\n\n\nDevelopment of new biomarkers to detect cancer in liquid biopsies in patients with nonspecific symptoms of cancer \n\n\n\njoin Teams webinar\n\n\n\nThe webinar will cover how we generally work with the development of new biomarkers to detect cancer using liquid biopsies in patients with nonspecific symptoms of cancer. More specifically\, the concept of fragmentomics will be presented and preliminary data from an ongoing study. \n\n\n\n \n\n\n\nEveryone is welcome so feel free to spread the details with anyone who may be interested. Hope to see you there! \n\n\n\nHost: Gisela Helenius\, Platform Scientific Director at Clinical Genomics Örebro \n\n\n\nInvited speaker: Alvida Qvick och Mårten Lindqvist\, Clinical Genomics Örebro
URL:https://www.scilifelab.se/event/fragmentomics-as-a-pancancer-biomarker-in-liquid-biopsies/
LOCATION:Online event via Zoom
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2025/05/Clinical-Genomics-Webinar-series.jpg
ORGANIZER;CN="Clinical Genomics %C3%96rebro":MAILTO:gisela.helenius@regionorebrolan.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20250605T120000
DTEND;TZID=Europe/Stockholm:20250605T130000
DTSTAMP:20260404T140915
CREATED:20250109T103238Z
LAST-MODIFIED:20250609T124523Z
UID:10001445-1749124800-1749128400@www.scilifelab.se
SUMMARY:Campus Solna Seminar Series: Yuvarani Masarapu & Franziska Ragaller
DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 20 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nPhD students that are attending the Campus Solna Seminar lectures will have the opportunity to gain credits. For the syllabus and instructions on how to obtain these credits\, read this document. Please contact your own department at your host University to confirm.See here the full schedule for this semester. \n\n\n\nThis week:\n\n\n\n\n\n\nYuvarani Masarapu\n\n\n\nStefania Giacomello – alpha 3 \n\n\n\n \n\n\n\n\n\nFranziska Ragaller\n\n\n\nErdinc Sezgin – gamma 3 \n\n\n\nReconstitution of the immune synapse \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page.
URL:https://www.scilifelab.se/event/campus-solna-seminar-series-yuvarani-masarapu-franziska-ragaller/
LOCATION:Milkyway SciLifeLab Solna\, Tomtebodavägen 23\, Solna
CATEGORIES:Community
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/12/IMG_4110-scaled.jpg
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20250609T080000
DTEND;TZID=Europe/Stockholm:20250619T170000
DTSTAMP:20260404T140915
CREATED:20250121T125239Z
LAST-MODIFIED:20250121T125322Z
UID:10001457-1749456000-1750352400@www.scilifelab.se
SUMMARY:Raukr 2025 - Summer School - R beyond the basics
DESCRIPTION:Course description\n\n\n\nJoin us this June in the beautiful and historic town of Visby and sharpen your R skills with like-minded enthusiasts! As the use of R continues to flourish within the realms of Life Science and Bioinformatics – revolutionizing data transformation\, statistical analysis\, and the creation of visuals ready for publication – we are thrilled to offer a workshop dedicated to elevating your expertise with R. \n\n\n\nWe are excited to announce our invited guest instructors for this year: Jennifer Bryan (Posit)\, Christophe Dervieux (Posit) and Henrik Bengtsson (UCSF). \n\n\n\nPlease consider joining us for this enriching experience. For more details and to apply\, visit our homepage. We’d also greatly appreciate you sharing this opportunity with others who might be interested. \n\n\n\nCourse content\n\n\n\nWe will be covering a number of topics in R programming with focus on R features helpful in bioinformatics and computational biology data analyses workflow: \n\n\n\n\nReproducible research in R (Quarto\, Rmarkdown\, Renv)\n\n\n\nCollaborative work using Git and GitHub\n\n\n\nR code style guide & best practices\n\n\n\nCode debugging\, optimization and profiling\n\n\n\nParallelization and vectorization in R\n\n\n\nCrafting your own functions\n\n\n\nObject oriented programming and R classes: S3\, S4\, R6 and RC\n\n\n\nAnatomy of an R package: Creating your own package from scratch\n\n\n\nTidy data flow using tidyverse\n\n\n\nUsing the language of graphics: ggplot2\n\n\n\nDeveloping web applications using Shiny\n\n\n\nR and Python integration using reticulate\n\n\n\nTeam project work – developing data analyses workflow in R using acquired skills\n\n\n\n\nLearning outcomes\n\n\n\nUpon completion of this course\, you will be able to: \n\n\n\n\nWork collaboratively and reproducibly in R\n\n\n\nOptimize R code\n\n\n\nUnderstand R code to a greater extent\n\n\n\nCreate better visualizations\n\n\n\nAnd more!\n\n\n\n\nEntry requirements\n\n\n\nThe course is aimed at both Ph.D. students and researchers within Life Sciences who are already using R for basic bioinformatics analyses and who would like to start using R at a more advanced level. In order for you and other participants to benefit the most\, you should consider yourself eligible if you are comfortable with reading and transforming data\, installing and using third-party packages and plotting using standard R graphics. \n\n\n\nWe offer places for participants from all over the world\, but there are a number of places reserved for participants from Sweden. Due to limited space the course can accommodate approximately 45 participants. If we receive more applications\, participants will be selected based on selection criteria\, including (but not limited to) correct entry requirements\, motivation to attend the course\, as well as gender and geographical balance. \n\n\n\nBy participating in this workshop\, you agree to the NBIS Code of conduct: https://uppsala.instructure.com/courses/105973/pages/code-of-conduct \n\n\n\nCourse fee\n\n\n\nThis on-site training event costs 9500 SEK for academic participants and 19 000 SEK for non-academic participants\, invoiced to the participant’s organization. If you accept a position and do not participate (no-show) you will still be invoiced at the standard fee. Please note that NBIS cannot invoice individuals. \n\n\n\nThe fee includes: \n\n\n\n\nParticipation in lectures and workshops\n\n\n\nMingle reception with snacks and drinks\n\n\n\nDaily breakfast/coffee\, lunch and afternoon coffee during the workshop\n\n\n\nOne official course dinner\n\n\n\nSurprise social activities\n\n\n\n\nNOT included in the fee: \n\n\n\n\nAccommodation\n\n\n\nTravel to and from Visby\n\n\n\nDaily dinners\n\n\n\n\nImportant information\n\n\n\nApplication opens: 13 Jan 2025 \n\n\n\nApplication closes: 06 Apr 2025 \n\n\n\nConfirmation to accepted participants: Rolling acceptance. \n\n\n\nResponsible teachers: Marcin Kierczak\, Sebastian DiLorenzo\, Roy Francis \n\n\n\nContact information: raukr@nbis.se \n\n\n\n\n\nRegister here\n\n\n\n\n\nCourse website
URL:https://www.scilifelab.se/event/raukr-2025-summer-school-r-beyond-the-basics/
LOCATION:B-huset\, Campus Gotland\, Cramérgatan 3\, Visby\, Sweden
CATEGORIES:Course
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2025/01/RaukR.jpg
ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se
END:VEVENT
END:VCALENDAR