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BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220110T091500
DTEND;TZID=Europe/Stockholm:20220110T120000
DTSTAMP:20260403T224802
CREATED:20220104T120442Z
LAST-MODIFIED:20220104T124039Z
UID:10000503-1641806100-1641816000@www.scilifelab.se
SUMMARY:Data Driven Life Science Seminars at Gothenburg University - Precision medicine and diagnostics
DESCRIPTION:Welcome to attend the first open\, digital seminar as part of the recruitment process given by the top candidates for the two group leader positions in data driven life science (DDLS) at University of Gothenburg. \n\n\n\nThe SciLifeLab and Wallenberg National Program for Data-Driven Life Science (DDLS) is a 12-year initiative funded with a total of 3.1 billion SEK from the KAW.  \n\n\n\n\n\n\n\nRead more about the Seminar
URL:https://www.scilifelab.se/event/data-driven-life-science-seminars-fellows-at-gothenburg-university-precision-medicine-and-diagnostics/
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/01/Bild1-e1641298402677.jpg
ORGANIZER;CN="Data-Driven Life Science @ SciLifeLab":MAILTO:ddls@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220113T100000
DTEND;TZID=Europe/Stockholm:20220113T121500
DTSTAMP:20260403T224802
CREATED:20220104T123540Z
LAST-MODIFIED:20220104T123818Z
UID:10000504-1642068000-1642076100@www.scilifelab.se
SUMMARY:Data Driven Life Science Seminars at Gothenburg University - Epidemiology and infection biology
DESCRIPTION:Welcome to attend the second open\, digital seminar as part of the recruitment process given by the top candidates for the two group leader positions in data-driven life science (DDLS) at University of Gothenburg. \n\n\n\nThe SciLifeLab and Wallenberg National Program for Data-Driven Life Science (DDLS) is a 12-year initiative funded with a total of 3.1 billion SEK from the KAW.  \n\n\n\n\n\n\n\nRead more about the Seminar
URL:https://www.scilifelab.se/event/data-driven-life-science-seminars-at-gothenburg-university-epidemiology-and-infection-biology/
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/01/Bild1-e1641298402677.jpg
ORGANIZER;CN="Data-Driven Life Science @ SciLifeLab":MAILTO:ddls@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220117T080000
DTEND;TZID=Europe/Stockholm:20220121T170000
DTSTAMP:20260403T224802
CREATED:20211022T070851Z
LAST-MODIFIED:20211022T071315Z
UID:10000473-1642406400-1642784400@www.scilifelab.se
SUMMARY:NBIS workshop in Neural Nets and Deep Learning
DESCRIPTION:National course open for PhD students\, postdocs\, researchers and other employees in need of Neural networks and Deep Learning skills within all Swedish universities. \n\n\n\nImportant dates\n\n\n\nApplication opens: 2021-11-01 \n\n\n\nApplication closes: 2021-12-05 \n\n\n\nConfirmation to accepted students:  2021-12-19 \n\n\n\nResponsible teachers:  Claudio Mirabello\, Bengt Sennblad \n\n\n\nIf you do not receive information according to the above dates please contact: edu.neural-nets-deep-learning@nbis.se \n\n\n\nCourse fee\n\n\n\nA course fee* of 2200 SEK will be invoiced to accepted participants. This includes lunches\, coffee and snacks. \n\n\n\n*Please note that NBIS cannot invoice individuals \n\n\n\nCourse content\n\n\n\nThis course will give an introduction to the concept of Neural Networks (NN) and Deep Learning. \n\n\n\nTopics covered will include: \n\n\n\nNN building blocks\, including concepts such as neurons\, activation functions\, loss functions\, gradient descent and back-propagationConvolutional Neural NetworksRecursive Neural NetworksAutoencodersBest practices when designing NNs\n\n\n\nLearning Outcomes\n\n\n\nUpon completion of this course\, you will be able to: \n\n\n\nDistinguish the concepts of “Artificial Intelligence”\, “Machine Learning”\, “Neural Networks”\, “Deep Learning”Distinguish between different types of learning (e.g. supervised\, unsupervised\, reinforcement) and recognise which applies to their own problemDistinguish between linear and non-linear approaches and recognise which is best suited for application to their own problemDescribe what a feed-forward neural network (FFNN) is\, along with its components (neurons\, layers\, weights\, bias\, activation functions\, cost functions)Explain how training of a FFNN works from a mathematical point of view (gradient descent\, learning rate\, backpropagation)Execute with pen and paper a few steps of training of a very simple FFNN modelTell the difference between a shallow and a deep networkExplain broadly how different NN architectures are wired and how they workImplement and apply the most appropriate architecture to a given problem/datasetAnalyze training curves and prediction outputs to evaluate if the training has been successfulDebug possible issues with the training and suggest changes to fix themExplain the difference between training\, validation and testingDefine what overfitting is from a mathematical point of view\, and what issues it causesIdentify what constitutes good practices of dataset design and how to avoid introducing information leakage or other biases when building their own datasets\n\n\n\n\n\n\n\n\nCOURSE INFORMATION\n\n\n\nAPPLICATION\n\n\n\n\n\n\n\n\nEntry requirements\n\n\n\nRequired for being able to follow the course and complete the computer exercises: \n\n\n\nFamiliarity with Unix/LinuxAbility to bring your own laptop with Python and Jupyter Notebooks  installed for the practical exercisesProgramming/scripting experience in Python (e.g. having attended the NBIS workshop in basic Python or equivalent)Basic experience of statistics and mathematics (e.g. having attended the NBIS workshop Introduction to Biostatistics and Machine Learning or equivalent)\n\n\n\nDesired \n\n\n\nYou have experience of working with Jupyter NotebooksYou have a necessity  to work with large datasets (e.g. thousands of samples)\n\n\n\nDue to limited space the course can accommodate a maximum of 25 participants. If we receive more applications\, participants will be selected based on several criteria. Selection criteria include correct entry requirements\, motivation to attend the course as well as gender and geographical balance.
URL:https://www.scilifelab.se/event/nbis-workshop-in-neural-nets-and-deep-learning/
LOCATION:Navet\, SciLifeLab Uppsala\, SciLifeLab Uppsala\, BMC C11\, Husargatan 3\, Uppsala\, 75237\, Sweden
CATEGORIES:Course
ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220118T083000
DTEND;TZID=Europe/Stockholm:20220118T113000
DTSTAMP:20260403T224802
CREATED:20220110T151719Z
LAST-MODIFIED:20220112T123959Z
UID:10000505-1642494600-1642505400@www.scilifelab.se
SUMMARY:DDLS Fellow candidate seminar at Umeå University
DESCRIPTION:Adjacent to the recruitment process for a group leader position in Data-Driven Life Science (DDLS) in precision medicine and diagnostics at Umeå University\, the top candidates will present at a seminar.  \n\n\n\nThe seminar will be held on Zoom\, January 18 2022 08:30 – 11:30. \n\n\n\n \n\n\n\nRead more\n\n\n\n\n\n\n\n \n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nRead more
URL:https://www.scilifelab.se/event/ddls-fellow-candidate-seminar-at-umea-university/
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2021/06/DDLS-landing-page-images.png
ORGANIZER;CN="Data-Driven Life Science @ SciLifeLab":MAILTO:ddls@scilifelab.se
LOCATION:https://www.scilifelab.se/event/ddls-fellow-candidate-seminar-at-umea-university/
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220118T100000
DTEND;TZID=Europe/Stockholm:20220223T160000
DTSTAMP:20260403T224802
CREATED:20211101T090147Z
LAST-MODIFIED:20211101T090730Z
UID:10000477-1642500000-1645632000@www.scilifelab.se
SUMMARY:Digital image analysis for scientific applications – focus MAX IV\, 5-8 ECTS credits
DESCRIPTION:The course aims at giving doctoral students and researchers from different disciplines a sufficient understanding of digital image processing and analysis techniques to solve basic image analysis problems. The content of the course includes methods especially suitable for MAX IV data. The course will also offer an introduction to several freely available software tools (e.g. CellProfiler\, ImageJ\, and ilastik)\, preparing the participants to start using computerized image analysis in their research. By inviting researchers interested in using MAX IV and image analysis\, and allowing them to work on data of similar type but produced elsewhere\, the course has the added value of attracting more researchers to MAX IV and also increasing the awareness of future possibilities giving a head-start in defining and planning MAX IV projects. The basics of image analysis are general\, but by designing examples and hands-on computer exercises based on published data from other world-leading X-ray facilities\, we can prepare participants for the future. After the course\, the participants will not only have a better understanding of the underlying theory and possibilities of image analysis but also be better at designing their experiments in the MAX IV environment. \n\n\n\nCourse Period\n\n\n\nJanuary-February 2022 \n\n\n\nCourse information\n\n\n\nLectures and computer exercises will be given online in English on Tuesdays and Wednesdays\, starting from January 18 to February 23 (weeks 3-8)\, from 10 am to 4 pm.The course will be given remotely via Zoom and Studium \n\n\n\nMore information can be found here \n\n\n\n \n\n\n\nECTS credits\n\n\n\n8 ECTS for the whole course (including a short project)\, 5 ECTS for a shorter version \n\n\n\nApplication\n\n\n\nApplication from course participants should be sent to Damian Matuszewski\, damian.matuszewski@it.uu.se\, not later than 15 December 2021.
URL:https://www.scilifelab.se/event/digital-image-analysis-for-scientific-applications-focus-max-iv-5-8-ects-credits/
LOCATION:Online event via Zoom
CATEGORIES:Course
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220118T110000
DTEND;TZID=Europe/Stockholm:20220118T115000
DTSTAMP:20260403T224802
CREATED:20220114T110350Z
LAST-MODIFIED:20220114T110649Z
UID:10000507-1642503600-1642506600@www.scilifelab.se
SUMMARY:SciLifeLab Uppsala PhD&Postdoc seminar series
DESCRIPTION:Welcome to the SciLifeLab Uppsala PhD&Postdoc seminar series! \n\n\n\n \n\n\n\nFor this occasion the speakers will be: \n\n\n\n1. Inês Neves\, Phd student at the Neuro-Oncology group (Lene Uhrbom’s lab)\, Dept. of Immunology\, Genetics and Pathology \n\n\n\nTitle:Stages and transitions of glioblastoma development from a defined glial cell of origin. \n\n\n\nSummary:Tumor cells displaying OPC identity are common in pediatric brain tumors such as medulloblastoma and malignant glioma. In pediatric malignant glioma it is in fact the most frequent cell state found but the significance of this is not known. We have recently shown that neonatal OPCs can serve as cell of origin for experimental malignant glioma and that these tumors were relevant representatives of pediatric high-grade glioma. The purpose of this project is to investigate the role of OPC identity and how it is connected with OPC origin in pediatric malignant glioma with the goal to understand the processes driving tumor malignancy and uncover tumor cell-specific targetable mechanisms. \n\n\n\n2. Viktor Ek\, PhD student at Mikael Sellin’s group\, Dept. of Medical Biochemistry and Microbiology (IMBIM) \n\n\n\nTitle:Bacterium-bacterium heterogeneity. \n\n\n\nSummary:Bacteria come in all shapes and sizes. Their morphology is no accident\, and often visually similar bacteria have similar lifestyles. Salmonella are gut bacteria that cause severe health problems throughout developing countries. The species Salmonella Typhimurium (S.Tm) are rod-shaped\, single-cell pathogens that swim around using appendages known as flagella. They use this ability to spread out locally and search for fitting sites for infection\, but turn off such virulence machinery to save energy during e.g. replication. In this seminar\, we will discuss our study of a previously overlooked phenotype of S.Tm that we call “doublets”\, a mid-division and simultaneously swimming category. Intriguingly\, this transient phenotype is highly capable of infecting cells. Doublets also swim straighter than the other bacteria\, likely because of their size\, increasing the overall search area for fitting invasion sites for the community. Such divergence contributes to an advantageous diversification of the S.Tm population – and serves as a healthy reminder of individual-to-individual differences in general populations. \n\n\n\nPlease join us using this Zoom link: https://uu-se.zoom.us/j/62510720849
URL:https://www.scilifelab.se/event/scilifelab-uppsala-phdpostdoc-seminar-series/
CATEGORIES:Community
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220119T100000
DTEND;TZID=Europe/Stockholm:20220119T140000
DTSTAMP:20260403T224802
CREATED:20220113T114132Z
LAST-MODIFIED:20220113T120355Z
UID:10000506-1642586400-1642600800@www.scilifelab.se
SUMMARY:DDLS Fellow candidates seminar at the Swedish Museum of Natural History (NRM)
DESCRIPTION:The Swedish Museum of Natural History (NRM) is hiring a tenure-track researcher in Data-Driven Life Science (DDLS)\, within the field of biodiversity and evolution. \n\n\n\nThe research position is funded by the SciLifeLab and Wallenberg National Program for Data-Driven Life Science (DDLS)\, which is a 12-year initiative funded with a total of 3.1 billion SEK from the Knut and Alice Wallenberg Foundation (for more details\, see www.scilifelab.se/data-driven). The DDLS Fellows will be recruited as independent group leaders at the respective host institution\, and will have the opportunity to link up with other local research groups as well as the within the national DDLS programme. \n\n\n\nAs a part of the recruitment process\, the top-ranked candidates for the NRM position will give digital seminars that are open for the general public.  \n\n\n\n \n\n\n\nSchedule of presentations: \n\n\n\n10:00 Nicolas Dussex \n\n\n\n10:30 Michael Westbury \n\n\n\n11:00 Tom van der Valk \n\n\n\n11:30 Break \n\n\n\n13:00 Elin Videvall \n\n\n\n13:30 Benjamin Vernot \n\n\n\n \n\n\n\nOrganizers: NRM DDLS Recruitment Committee
URL:https://www.scilifelab.se/event/ddls-fellow-candidates-seminar-at-the-swedish-museum-of-natural-history-nrm/
LOCATION:Online event via Zoom
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220124T080000
DTEND;TZID=Europe/Stockholm:20220127T170000
DTSTAMP:20260403T224802
CREATED:20211202T114921Z
LAST-MODIFIED:20220330T154213Z
UID:10000496-1643011200-1643302800@www.scilifelab.se
SUMMARY:SciLifeLab Infrastructure outreach week
DESCRIPTION:SciLifeLab is a national infrastructure within life science available for researchers in academia\, healthcare\, and industry. We provide access to a range of nationally unique and internationally competitive technologies in molecular biosciences that can be used to address questions in a broad range of life science disciplines. During four sessions we will highlight our capabilities to provide services within the research areas 1) drug discovery\, 2) precision medicine\, 3) ecosystem surveillance and evolutionary biology and 4) structural biology. We will present relevant technologies available at SciLifeLab and illustrate their utilization by user cases related to the topic of each session.  \n\n\n\n \n\n\n\n  \n\n\n\n\nREGISTER HERE\n\n\n\n\n\n\n\n\nProgram\n\n\n\nJan 24 at 13:00-15:00Is your idea ready for drug discovery?\n\n\n\nNo matter whether your answer is yes or no\, the national infrastructures for target- and drug discovery can help you move your project forward. This session introduces you to the capabilities and technologies spanning the entire range from high-throughput genetic and chemical screening for target identification via drug design using medicinal chemistry and molecular biology to preclinical proof of concept before pre-clinical development. Former and current users will give you a user’s perspective of the infrastructures. \n\n\n\nTarget audience: We welcome all Swedish academic and research groups and industrial users to hear about our platform activities! \n\n\n\nSciLifeLab units presented: Drug Discovery and Development Platform (DDD)\, Chemical Biology Consortium Sweden (CBCS)\, CRISPR Functional Genomics (CFG)\, Chemical Proteomics \n\n\n\n \n\n\n\nJan 25 at 11:00 – 13:00Towards enabling Precision and Translational Medicine\n\n\n\nThis session will cover:– Identification of biomarkers in biofluids and tissues.– Identification of therapeutical targets. Target audience: clinicians and preclinical researchers at Universities and University Hospitals. Startups\, biotech companies\, biotech companies and scientists interested in precision medicine are also welcome.SciLifeLab units presented: Clinical Proteomics and Immunology\, NGI\, CBGE\, Eukaryotic single cell genome\, NBIS\, Spatial and single cell biology\, Clinical Genomics \n\n\n\nJan 26 at 10:00 – 12:00Evolution\, molecular ecology and environment\n\n\n\nThis session will cover: multiple aspects of evolution\, molecular ecology and environment \n\n\n\nTarget audience: Scientists with interest in the fields of evolution\, molecular ecology and environmentSciLifeLab units presented: NGI\, IMT-UmU/Cryo-EM\, Bioinformatics\, Microbial Single Cell Genomics\, Ancient DNA\, and additional units. \n\n\n\nJan 27 at 10:00 – 12:00Visualising life at the molecular level\n\n\n\nThis session will cover:– Protein studies at atomic level– Protein localization in tissue/cells– Protein interactions and dynamics\,Target audience: Structural Biologist (also from industry)\, Preclinical researchers\, and Cell biologists.  SciLifeLab units presented: ISB\, Cellular and Molecular imaging\, NBIS\, Spatial and Single cell biology \n\n\n\n \n\n\n\n\n\nView detailed program
URL:https://www.scilifelab.se/event/scilifelab-infrastructure-outreach-week/
LOCATION:Online event via Zoom
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2021/12/Artboard-1.jpg
ORGANIZER;CN="SciLifeLab Event":MAILTO:events@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220127T084500
DTEND;TZID=Europe/Stockholm:20220127T170000
DTSTAMP:20260403T224802
CREATED:20211130T143050Z
LAST-MODIFIED:20211130T160953Z
UID:10000492-1643273100-1643302800@www.scilifelab.se
SUMMARY:11th Symposium on Pharmaceutical Profiling in Drug Discovery and Development
DESCRIPTION:Uppsala University’s Department of Pharmacy hosts the 11th Pharmaceutical Profiling meeting on Thursday\, January 27\, 2022\, at The Humanities Theatre\, English Park Campus\, Uppsala. \n\n\n\nJanuary 27\, 2022The Humanities Theatre\, English Park Campus\, UppsalaConfirmed speakers \n\n\n\nKathryn A. Whitehead (Carnegie Mellon University\, US)Ola Engkvist (AstraZeneca\, Sweden)Carolina Wählby (Uppsala University\, Sweden)Samir EL Andaloussi (Karolinska Institutet\, Sweden)Ola Spjuth (Uppsala University\, Sweden)Pär Matsson (University of Gothenburg\, Sweden)Annabelle Biscans (AstraZeneca\, Sweden)\n\n\n\nWe highly encourage all participants to bring a scientific poster.
URL:https://www.scilifelab.se/event/11th-symposium-on-pharmaceutical-profiling-in-drug-discovery-and-development/
LOCATION:Humanities Theater\, Engelska parken\, Uppsala\, 75238\, Sweden
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220127T130000
DTEND;TZID=Europe/Stockholm:20220127T140000
DTSTAMP:20260403T224802
CREATED:20220124T151708Z
LAST-MODIFIED:20220124T151804Z
UID:10000516-1643288400-1643292000@www.scilifelab.se
SUMMARY:Campus Solna Seminar Series
DESCRIPTION:Welcome to the Campus Solna Seminar Series – an initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between the alpha and gamma buildings. The format will be 2 short 15 min talks (1 speaker from alpha and 1 from gamma)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-12:50 and in Air&Fire\, SciLifeLab Stockholm. \n\n\n\n\n\n\nJoel Hallgren\n\n\n\nKristina Jonas-group\, gamma 5 \n\n\n\nTo stay or to leave? – (p)ppGpp signaling determines bacterial lifestyle decisions during distinct starvation conditions
URL:https://www.scilifelab.se/event/61525/
LOCATION:Online event via Zoom
CATEGORIES:Community
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220128T170000
DTEND;TZID=Europe/Stockholm:20220128T180000
DTSTAMP:20260403T224802
CREATED:20211025T140613Z
LAST-MODIFIED:20220127T120109Z
UID:10000474-1643389200-1643392800@www.scilifelab.se
SUMMARY:FAIRPoints 
DESCRIPTION:Location: Online via Zoom\n\n\n\nSee in your time zone \n\n\n\nFAIRPoints is an event series bringing together people across the research ecosystem to discuss\, highlight\, and share pragmatic solutions to making FAIR a reality.  \n\n\n\nFAIRPoints in collaboration with GoFAIR US\, SDSC\, AGU\, and SciLifeLab Data Centre aims to enhance community building and knowledge sharing across diverse geographic and domain areas in order to cultivate researchers’ engagement in FAIR on a global scale. \n\n\n\n\nOur main aims are to: \n\n\n\nProvide a platform for FAIR conversations featuring the latest developments from the communityHighlight use-cases and how-to-approaches addressing FAIR implementation from researchers and research support staff perspectivesCapture and share the discussion outcomes in pragmatic\, bite-sized lesson material with integrated schemasMake FAIR more accessible to broader audiences Explore FAIR practices from a global perspective\n\n\n\n\n\n\n\n\nThis event series will feature the work done around FAIR implementation across our collaborating organizations\, cultivate engagement and relationships between researchers on all levels\, data service providers\, policy-\, decision makers and organization members in response to rapid scientific progress\, as well as foster the development of impactful and more globally connected FAIR solutions.  \n\n\n\nTo that end\, we would like to welcome all those interested in supporting our activities to join our task force and contribute to our working groups\, including: \n\n\n\nDesigning of machine-actionable training materialCommunity building and outreach Technical support Hosting/Co-hosting virtual events Accessibility and inclusionPartnership and collaboration\n\n\n\nIf you are interested in hearing more and in joining our efforts as we move forward towards launching the event series\, please register for our event to receive the Zoom link! \n\n\n\nTwitter: @FAIR_Points \n\n\n\n\n\n\n\nContact: SciLifeLab Data Centre\, datacentre@scilifelab.se \n\n\n\nRegister here
URL:https://www.scilifelab.se/event/fairpoints/
LOCATION:Online event via Zoom
CATEGORIES:Event
ORGANIZER;CN="SciLifeLab Data Centre":MAILTO:datacentre@scilifelab.se
END:VEVENT
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