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X-ORIGINAL-URL:https://www.scilifelab.se
X-WR-CALDESC:Events for SciLifeLab
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BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220815T113000
DTEND;TZID=Europe/Stockholm:20220815T121500
DTSTAMP:20260404T050911
CREATED:20220615T132143Z
LAST-MODIFIED:20220622T114102Z
UID:10000625-1660563000-1660565700@www.scilifelab.se
SUMMARY:Calls for new project support in chemical biology and drug discovery
DESCRIPTION:The chemical biology unit (CBCS) and the Drug discovery and development (DDD) platform at SciLifeLab have calls out for projects. \n\n\n\nCBCS is looking for projects in Chemical Biology which includes assay development for small molecule screening and profiling\, as well as enabling chemistry. For more information\, please visit www.cbcs.se. \n\n\n\nThe DDD platform has a call looking for new project proposals for drug discovery. All therapeutic modalities that can be developed in collaboration with the DDD platform at SciLifeLab are of interest\, including small molecules\, antibodies\, oligonucleotides and new modalities. \n\n\n\nSome users and projects are at the intersection between chemical biology and drug discovery.This webinar aims to guide users to the call that best suits the needs of their project. \n\n\n\nRegistration
URL:https://www.scilifelab.se/event/calls-for-new-project-support-in-chemical-biology-and-drug-discovery/
LOCATION:Online event via Zoom
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220821T080000
DTEND;TZID=Europe/Stockholm:20220902T170000
DTSTAMP:20260404T050911
CREATED:20220328T095502Z
LAST-MODIFIED:20220406T145719Z
UID:10000571-1661068800-1662138000@www.scilifelab.se
SUMMARY:Integrative Structural Biology Course
DESCRIPTION:InfraLife is preparing a course in integrative structural biology where we cover not only the basics of state-of-the-art structural biology techniques\, but also how to combine the information to address a biological question. The course will take place in August 21-September 2\, in Lund\, Gothenburg and Stockholm. \n\n\n\nRead more\n\n\n\napply now!\n\n\n\nWhat will the course cover? \n\n\n\nThe two week course is a joint effort between the three large-scale research infrastructures SciLifeLab\, MAX IV and ESS and additional related platforms. The aim is to give an overview of the structural biology available at the research infrastructures in Sweden. The course will focus on understanding the sample requirements\, the nature of structural information that can be obtained and how data from multiple structural biology methods can be combined using e.g. computational chemistry techniques. The course consists of lectures\, key note speakers\, modelling practicals and facility visits. In addition events allowing time for networking within the group of students\, the teachers and other infrastructure personnel\, contributing to an expanded professional network. \n\n\n\nTechnologies and methods \n\n\n\nMacromolecular X-ray and neutron crystallographySmall angle X-ray and neutron scatteringCryo-electron microscopyMacromolecular nuclear magnetic resonance spectroscopyStructural mass spectrometryComputational chemistry techniquesBiophysical characterization \n\n\n\nWho should attend? \n\n\n\nThe course is open to scientists of all age from academia\, health care and industry. Level approximately corresponding to PhD student or postdoc depending on experience. Applicants welcome from Sweden\, the Nordics\, and other countries.
URL:https://www.scilifelab.se/event/integrative-structural-biology-course/
CATEGORIES:Course
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2021/05/Infralife-square.jpg
ORGANIZER;CN="InfraLife":MAILTO:events@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220823T090000
DTEND;TZID=Europe/Stockholm:20220823T120000
DTSTAMP:20260404T050911
CREATED:20220622T145418Z
LAST-MODIFIED:20220622T145419Z
UID:10000637-1661245200-1661256000@www.scilifelab.se
SUMMARY:BioImage Analysis support – Call4Help
DESCRIPTION:Every month (mainly on Tuesdays\, but there might be exceptions) the BioImage Informatics Facility together with microscopy expert Sylvie Le Guyader (LCI\, Karolinska Institutet) organizes a Call4Help session. The aim is to offer combined expertise towards microscopy and bioimage analysis. All researchers from Swedish institutes can participate. \nThe ideal timepoint to join the Call4Help session is when a researcher has performed pilot experiments and has tried out first analysis approaches – but before having recorded hundreds of images. Combining BIIF’s expertise in BioImage Analysis with microscopy expertise we can discuss ways to record the images that allow analysis afterwards. We will discuss different analysis approaches using mainly open-source software (Fiji\, CellProfiler\, QuPath\, Ilastik\, KNIME)\, but also commercial systems\, if needed (Imaris). \nThe Call4Help session format has been introduced to the BioImage Analysis community by NEUBIAS and ScopeM. \n  \nHow to participate? \nStep1: \nPrepare a short presentation (5-7 min)  – use the following template for your presentation: \nhttp://bit.ly/BIIF_C4H_slideTemplate \nSlide template by NEUBIAS/ScopeM \nStep2: \n\na) Upload your presentation \n\n  \nUpload your presentation to a drive of your choice. You can also use our Call4Help google drive. Note that files shared on our Call4Help drive will be available to everyone until the session is over. \nhttp://bit.ly/BIIF_C4H_Drive \n\nb) Upload example images for testing. \n\nUpload example images for testing either to the drive of your choice or our Call4Help google drive above. \nhttp://bit.ly/BIIF_C4H_Drive \n\nc) Register by filling out the registration form: \n\nhttp://bit.ly/BIIF_C4H_Registration \nStep 3: \nJoin the zoom-session. \nIf your problem is selected for presentation\, you will get a time-slot of 30 – 60 minutes within the session. \n  \nWhat are the Deadlines \nSubmission of a problem and upload of example data: Friday the week before the session. \nNotification about participation: The day before the session. \nNext Call4Help session: Tuesday\, August 23\, 2022\, 9.00-12.00 \nDeadline for application: Friday\, August 19\, 2022
URL:https://www.scilifelab.se/event/bioimage-analysis-support-call4help-6/
LOCATION:Online event via Zoom
CATEGORIES:Event
ORGANIZER;CN="Bioimage Informatics Unit":MAILTO:biif@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220826T173000
DTEND;TZID=Europe/Stockholm:20220826T190000
DTSTAMP:20260404T050911
CREATED:20220815T120715Z
LAST-MODIFIED:20220815T120910Z
UID:10000643-1661535000-1661540400@www.scilifelab.se
SUMMARY:Queer in Science
DESCRIPTION:Karolinska Institutet Post-Doc Association’s Diversity and Inclusion Office is organising our Queer in Science event. We are having guest speakers to share their personal and professional experiences being openly queer in science as well as their work on gender-related topics. We will also be discussing the gender (in)equality issues in STEM. Join us for this interactive and conversational session. It is a safe space for all. Sign up your interest here! \n\n\n\n\n\n\n\nContact: Elga Bandeira and Hazel Ang
URL:https://www.scilifelab.se/event/queer-in-science/
LOCATION:Biomedicum\, Solnavägen 9\, Solna
CATEGORIES:Community
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/08/Flyer_QUEER-in-Science_portrait_screen.png
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220829T080000
DTEND;TZID=Europe/Stockholm:20220902T170000
DTSTAMP:20260404T050911
CREATED:20220524T092955Z
LAST-MODIFIED:20220714T084938Z
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SUMMARY:Spatial omics data analysis
DESCRIPTION:This workshop provides resources to advanced tools for analysis of spatial datasets via a series of online lectures and computer practicals. The total course duration is 40 hours\, including the online lectures and practical coding workshop that will be held online. \n\n\n\nImportant dates\n\n\n\nApplication open: 2022-05-20 \n\n\n\nApplication deadline: 2022-07-31 \n\n\n\n\n\n\n\nCourse Leaders\n\n\n\nPaulo CzarnewskiChristophe Avenel\n\n\n\n\n\n\n\nLecturers and content creators\n\n\n\nLars BormCarolina WählbyGiovanni PallaNaveed IshaqueAnna SchaarDavid FischerHanna SpitzerSergio SallasÅsa BjörklundSebastian TiesmeyerLudvig BergenstråleEduard Chelebian\n\n\n\n\n\n\n\nContact information and Application\n\n\n\n\n\n\n\n\nCourse website\n\n\n\nEmail\n\n\n\nApplication\n\n\n\n\n\n\n\n\nCourse fee\n\n\n\nThis workshop is free of charge. \n\n\n\n\n\n\n\nCourse content\n\n\n\nTopics covered will include \n\n\n\nHands-on experience with ST (Visium)\, ISS\, scRNAseq data analysisFluorescence-based image formats\, standards and quality controlImage alignment\, registration and ISS decodingNuclei-based and segmentation-free cell identificationData imputation using ISS and single cell datasetsAnalysis of Spatial Transcriptomics datasetCell-type deconvolution (ST and single cell)Cell-cell and ligand-receptor interaction analysisMapping of multiple spatial data to a common referenceHigh-resolution projection of gene expression to H&E imagesInteractive visualisation of spatial omics data\n\n\n\n\n\n\n\nWho can apply?\n\n\n\nThis is an international course hosted by the National Bioinformatics Infrastructure Sweden (ELIXIR-SE) in collaboration with the Human Developmental Cell Atlas (HDCA)\, the Royal Institute of Technology\, Stockholm University\, Karolinska Institutet\, Uppsala University\, Charité Clinical University (ELIXIR-DE)\, Helmholtz Munich (Germany) and the European Molecular Biology Organisation. The course is open for PhD students\, postdocs\, group leaders and core facility staff working on spatial omics technologies. \n\n\n\nPlease note that NBIS training events do not provide any formal university credits. The training content is estimated to correspond to a certain number of credits\, however the estimated credits are just guidelines. If formal credits are crucial\, the student needs to confer with the home department before submitting a course application in order to establish whether the course is valid for formal credits or not. \n\n\n\nPractical exercises will be performed in Python\, so we only accept students that fulfill the entry requirements (see below). \n\n\n\n\n\n\n\nEntry requirements\n\n\n\nRequired for being able to follow the course and complete the practical exercises: \n\n\n\nBasic knowledge in PythonBe able to use your own computer with a web cameraHave miniconda3 installed in your computerDesirable: Previous experience with single cell RNA-seq analysis is an advantage.If we receive more applications\, participants will be selected based on several criteria. Selection criteria include correct entry requirements\, motivation to attend the course as well as gender and geographical balance.\n\n\n\nDue to limited space the course can accommodate a maximum of 32 participants. If we receive more applications\, participants will be selected based on several criteria. Selection criteria include correct entry requirements\, motivation to attend the course as well as gender and geographical balance.
URL:https://www.scilifelab.se/event/spatial-omics-data-analysis/
LOCATION:Online event via Zoom
CATEGORIES:Course
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/03/AdobeStock_218922152_front-scaled.jpg
ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220831T090000
DTEND;TZID=Europe/Stockholm:20220902T130000
DTSTAMP:20260404T050911
CREATED:20220511T071103Z
LAST-MODIFIED:20220511T071340Z
UID:10000604-1661936400-1662123600@www.scilifelab.se
SUMMARY:Snakemake BYOC (bring-your-own-code) workshop (ONLINE)
DESCRIPTION:National workshop open for PhD students (prioritized)\, postdocs\, researchers and others from all Swedish universities who have previously participated in the NBIS Tools for reproducible research course or with demonstrated experience in writing Snakemake workflows. \n\n\n\n\n\n\nCOURSE WEBSITE\n\n\n\nREGISTRATION\n\n\n\n\n\n\n\n\nImportant dates\n\n\n\nApplication opens:  May 15 \n\n\n\nApplication closes: June 17 \n\n\n\nConfirmation to accepted students:  June 28 \n\n\n\nResponsible teachers:  Verena Kutschera\, John Sundh\, Per Unneberg\, Marcel Martin \n\n\n\nContact information: edu.byoc-snakemake@nbis.se \n\n\n\n\n\n\n\nWorkshop fee\n\n\n\nThis online training event has no fee. However\, if you accept a position at the workshop and do not participate (no-show) you will be invoiced 1\,700 SEK. \n\n\n\n*Please note that NBIS cannot invoice individuals \n\n\n\n\n\n\n\nWorkshop content\n\n\n\nAs data analysis projects grow and change over time\, it gets increasingly difficult to keep track of how the different parts of the data analysis fit together. Workflow management systems such as Snakemake can be used to set up\, perform and monitor defined sequences of computational tasks (“workflows”)\, thereby making data analyses reproducible and scalable. Snakemake was developed in the bioinformatics community and has some features that make it particularly well suited for bioinformatics workflows. \n\n\n\nThe NBIS Tools for reproducible research course is held twice a year and provides an introduction into Snakemake and a tutorial to learn how to use Snakemake.This Snakemake BYOC (bring-your-own-code) workshop provides a follow-up to that introduction. Here\, participants will get support from experienced bioinformaticians to A) convert their data analysis from a programming language such as bash\, R or python into a Snakemake workflow\, or B) apply more advanced techniques to their existing Snakemake workflows. \n\n\n\n\n\n\n\nLearning outcomes\n\n\n\nAfter participation in the BYOC workshop\, participants will: \n\n\n\nBe able to create Snakemake workflows for bioinformatics data analysisDemonstrate knowledge of the structure and syntax of different types of Snakemake workflowsDemonstrate knowledge of advanced features of the Snakemake workflow language\n\n\n\n\n\n\n\nEntry requirements\n\n\n\nPrevious participation in the NBIS Tools for reproducible research workshop. The workshop is also open for participants who can demonstrate experience in writing Snakemake workflowsYour own bioinformatics analysis scripts in any programming language that you would like to convert into Snakemake OR your own Snakemake workflow that you would like to improveA computer with a webcam running Linux or Mac OS (if you run Windows and are accepted as a participant\, additional setup will be required). You will be asked to install the video conferencing software zoom (https://zoom.us/) to be able to participate in the workshop.\n\n\n\nThe workshop can accommodate a maximum of 16 participants. Selection criteria include correct entry requirements\, motivation to attend the workshop as well as gender and geographical balance. Academic affiliated registrants are prioritized prior to participants from the industry.
URL:https://www.scilifelab.se/event/snakemake-byoc-bring-your-own-code-workshop-online-2/
LOCATION:Online event via Zoom
CATEGORIES:Course
ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se
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