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X-WR-CALDESC:Events for SciLifeLab
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BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20240404T120000
DTEND;TZID=Europe/Stockholm:20240404T130000
DTSTAMP:20260404T025940
CREATED:20240102T095355Z
LAST-MODIFIED:20240321T143821Z
UID:10001088-1712232000-1712235600@www.scilifelab.se
SUMMARY:Campus Solna Seminar Series: Lovisa Franzén & Sergio Marco Salas
DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an  initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nThis week:\n\n\n\n\n\n\nLovisa Franzén\n\n\n\nPatrik Ståhl – alpha 3 \n\n\n\nA spatial exploration of lung fibrosis in mouse and human \n\n\n\n\n\nSergio Marco Salas\n\n\n\nMats Nilsson – gamma 4 \n\n\n\nA comprehensive benchmarking of in situ transcriptomics commercial platforms \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page.
URL:https://www.scilifelab.se/event/campus-solna-seminar-series-lovisa-franzen-sergio-marco-salas/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Community
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/12/IMG_4110-scaled.jpg
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20240404T150000
DTEND;TZID=Europe/Stockholm:20240404T160000
DTSTAMP:20260404T025940
CREATED:20240311T085357Z
LAST-MODIFIED:20240311T085358Z
UID:10001193-1712242800-1712246400@www.scilifelab.se
SUMMARY:Training Hub Fika
DESCRIPTION:We are thrilled to invite you to the first series of Training Hub Fika – grab your Thursday afternoon coffee and join us online for short talks and discussion on topics from digitalizing courses to using the Training Portal to career-spanning learning!  \n\n\n\nEveryone is welcome to attend and chat about supporting knowledge transfer and personnel development across Sweden. As one of SciLifeLab’s newest entities\, we look forward to meeting people from Lund to Umeå and sharing our support and expertise!
URL:https://www.scilifelab.se/event/training-hub-fika-2/
LOCATION:Online event via Zoom
CATEGORIES:Community
ORGANIZER;CN="Training Hub":MAILTO:traininghub@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20240408T130000
DTEND;TZID=Europe/Stockholm:20240409T153000
DTSTAMP:20260404T025940
CREATED:20240402T125022Z
LAST-MODIFIED:20240402T153433Z
UID:10001224-1712581200-1712676600@www.scilifelab.se
SUMMARY:Data Driven Life Science Seminars: "Data driven research in evolution and biodiversity"
DESCRIPTION:Data Driven Life Science Seminars. On the topic of “Data driven research in evolution and biodiversity “. \n\n\n\nWelcome to attend the open\, digital seminars as part of the recruitment process given by the top candidates for the group leader position in data driven life science (DDLS). \n\n\n\nLink to join the webinar\, password: 526883 \n\n\n\nRead more on the event website \n\n\n\nApril 8th\n\n\n\n13.00-14.00: Malin Olofsson\, Swedish University of Agricultural Sciences\, SLU. Combining multiple data to enhance understanding of phytoplankton evolution and biodiversity \n\n\n\n14.30-15.30: Mariana Pires Braga\, Swedish University of Agricultural Sciences\, SLU. Biotic interactions: teasing apart evolutionary processes from data biases \n\n\n\nApril 9th\n\n\n\n13.00-14.00: Harith Farooq\, University of Copenhagen\, Denmark. Biodiversity Data to guide Macroecology and Conservation \n\n\n\n14.30-15.30: Pooja Choksi\, University of Minnesota\, USA. tbd
URL:https://www.scilifelab.se/event/data-driven-life-science-seminars-data-driven-research-in-evolution-and-biodiversity/
LOCATION:Loftets bankettsal\, Ultuna\, Duhrevägen 8\, Uppsala
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20240408T151500
DTEND;TZID=Europe/Stockholm:20240408T161500
DTSTAMP:20260404T025940
CREATED:20240326T080916Z
LAST-MODIFIED:20240327T160812Z
UID:10001212-1712589300-1712592900@www.scilifelab.se
SUMMARY:Extracellular vesicles in cancer therapy-role of checkpoint molecules
DESCRIPTION:Susanne Gabrielsson \n\n\n\nProfessorKarolinska Institutet  \n\n\n\n \n\n\n\n\n\n\n\nBio\n\n\n\nProf. Gabrielsson has after her PhD at Stockholm University and a postdoc at the Curie Institute in Paris\, established a group dedicated to extracellular vesicle (EV)/exosome research at the Karolinska Institutet. She has been a pioneer in the field of immune effects of exosomes. Dr. Gabrielsson was the first to describe the presence of exosomes in bronchoalveolar lavage fluid\, as well as in breast milk. Her work has revealed that EVs are major players in lung diseases such as asthma and sarcoidosis\, where they contribute to inflammation. Her studies in animal models give new insights into how EV based therapies can be optimized for immunotherapeutic applications in cancer. \n\n\n\n \n\n\n\nExtracellular vesicles in cancer therapy-role of checkpoint molecules\n\n\n\n \n\n\n\nThe talk will focus on their work to use EVs for cancer therapy. They lately showed that EVs can induce response to checkpoint inhibitors in a treatment refractory model (Veerman et al\, 2023)\, and they are now investigating the role of PD-1 and PD-L1 on EVs by investigating immune responses to EVs from PD-1 and PD-L1 KO mice. \n\n\n\n \n\n\n\n\n\n\n\nHost: Masood Kamali-Moghaddam masood.kamali@igp.uu.se\, UU
URL:https://www.scilifelab.se/event/the-svedberg-seminar-susanne-gabrielsson/
LOCATION:BMC Room C8:301\, Husargatan 3\, Uppsala\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2022/02/Picture1-The-Svedberg.png
ORGANIZER;CN="The Svedberg Seminar Series":MAILTO:thesvedberg@scilifelab.uu.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20240409T120000
DTEND;TZID=Europe/Stockholm:20240409T130000
DTSTAMP:20260404T025940
CREATED:20240327T130412Z
LAST-MODIFIED:20240327T130414Z
UID:10001219-1712664000-1712667600@www.scilifelab.se
SUMMARY:Proteomics: everything you ever wanted to know but never dared to ask
DESCRIPTION:In the frame of the “SciLifeLab Site Umeå / KBC Infrastructure Seminar Series”\, the seminars will be organised every second Tuesday during spring 2024. The seminars will be held in a hybrid format – IRL in Glasburen\, KBC\, Umeå\, and online via Zoom. Learn more about the seminar series and Schedule for Spring 2024 here. \n\n\n\nOn April 9th\, at 12:00\, SciLifeLab Site Umeå / KBC Infrastructure Seminar Series presents: \n\n\n\nProteomics: everything you ever wanted to know but never dared to ask\n\n\n\nby \n\n\n\nAndré Mateus\, Assistant Professor at the Department of Chemistry\, Molecular Infection Medicine Sweden (MIMS)\, Umeå University \n\n\n\nDescription: Mass spectrometry-based proteomics enables measuring the individual levels of most proteins in a biological sample. This seminar will cover the basics on how proteomics is done and highlight multiple applications of this technique. It will also cover the most critical steps to enable confident results from proteomics. \n\n\n\nRegistration: Sign up for the IRL seminar and reserve your free lunch (sandwich\, drink\, and little sweet snack) by Monday\, 8 April\, 10:00 a.m.: \n\n\n\n\nhttps://www.umu.se/en/chemical-biological-centre/kbc_events/registration-form-infrastructure-seminar/\n\n\n\n\nor follow online (registration is not required): \n\n\n\nMeeting URL: https://umu.zoom.us/j/67909354528Meeting ID: 679 0935 4528 \n\n\n\nOrganisers: SciLifeLab Site Umeå and Chemical Biological Centre (KBC)\, Umeå
URL:https://www.scilifelab.se/event/proteomics-everything-you-ever-wanted-to-know-but-never-dared-to-ask/
LOCATION:Glasburen Seminar Room\, Chemical Biological Centre (KBC) Building\, Umeå University\, Umeå\, 901 87\, Sweden
CATEGORIES:Event
ORGANIZER;CN="SciLifeLab Ume%C3%A5":MAILTO:umea@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20240409T130000
DTEND;TZID=Europe/Stockholm:20240409T150000
DTSTAMP:20260404T025940
CREATED:20240212T162122Z
LAST-MODIFIED:20240226T142053Z
UID:10001153-1712667600-1712674800@www.scilifelab.se
SUMMARY:Patentability and Strategies for Novel Therapeutic Oligonucleotides
DESCRIPTION:Welcome to this seminar to learn more about intellectual properties regarding therapeutic oligonucleotides and strategies how to protect your invention. The seminar is organized by OligoNova Hub and SciLifeLab Drug Discovery and Development and is a hybrid event (Zoom or in-person at GoCo House).    \n\n\n\nAgenda \n\n\n\nIntroduction \n\n\n\n\nOligoNova Hub/ScilifeLab DDD: Pär Matsson\, 5 min\n\n\n\nAstraZeneca: Peter Storm 20 min\n\n\n\nRibocure: (TBC) 20 min\n\n\n\n\nPatentability and Strategies for Therapeutic Oligonucleotides \n\n\n\n\nPotter Clarkson: Fiona Hey\, Kevin Rich and Louise Tottie\n\n\n\n\nPanel discussion questions  \n\n\n\n\nModerator: OligoNova Hub/DDD\n\n\n\n\nModerator: OligoNova Hub/DDD \n\n\n\nProtecting your innovation and future proofing your enterprise may well mean the difference between commercial success and disappointment. However\, it is not always obvious what IP you have\, what you might be able to protect and what is worthwhile protecting.  With a focus on oligonucleotide inventions\, we will guide you through the requirements for patentability\, highlighting the challenges associated with oligonucleotides and outlining an IP strategy that you can apply to help you to achieve your commercial goals. \n\n\n\nFor those that attend the seminar in person\, there will be time to continue the discussion after the program with IP attorneys and academic and industrial scientist working with therapeutic oligonucleotides. Coffee and cake will be served. \n\n\n\nPrior this hybrid event there will be a more general webinar (March 25\, at 1 pm) “Patent Fundamentals for Academia and Biotech Inventions”. \n\n\n\nOligoNova Hub offers industry-standard research and development capabilities to Swedish academic researchers\, helping to transform their ideas into new oligonucleotide therapies. OligoNova Hub is part of the national SciLifeLab Drug Discovery and Development infrastructure\, supporting academic researchers in drug discovery and development towards innovative commercial assets that will benefit patients. \n\n\n\n \n\n\n\nRegistration \n\n\n\nregistration\n\n\n\nOrganizer \n\n\n\nFredrik Wångsell\, Research Advisor at OligoNova Hub/SciLifeLab Oligonucleotide Therapeutics Unit
URL:https://www.scilifelab.se/event/patentability-and-strategies-for-novel-therapeutic-oligonucleotides/
LOCATION:GoCo House\, Allvar Gullstrand\, Entreprenörsstråket 10\, Mölndal\, 431 53\, Sweden
CATEGORIES:Event
ORGANIZER;CN="OligoNova - Part of the Drug Discovery and Development Platform":MAILTO:par.matsson@oligonova.org
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20240410T123000
DTEND;TZID=Europe/Stockholm:20240410T163000
DTSTAMP:20260404T025940
CREATED:20240125T103059Z
LAST-MODIFIED:20240223T112828Z
UID:10001122-1712752200-1712766600@www.scilifelab.se
SUMMARY:SciLifeLab Train the Trainer Course
DESCRIPTION:This course offers guidance\, ideas and tips for designing training/teaching\, development and delivery on training activities\, all based on research-driven educational principles. This course will cover the following topics: \n\n\n\n\nLearning principles and how they apply to training and teaching\n\n\n\nDesign and plan session\, course\, materials\n\n\n\nTeaching techniques to enhance learner engagement and participation\n\n\n\nAssessment and feedback in training and teaching\n\n\n\nCreating and maintaining engagement\n\n\n\n\nCourse dates are: April 10\, April 17\, April 24 and May 2\, held from 12:30-16:30 each day \n\n\n\nRegistration Deadline: \n\n\n\nThe registration deadline is March 22\, 2024.  \n\n\n\nConfirmation to applicants 27-March-2024 \n\n\n\nThis course will be delivered through Zoom. You can find a link to the course pages below. \n\n\n\nRegistration\n\n\n\nNotes: \n\n\n\n\nThe course is highly interactive and hence it is important that you\, as a participant\, actively contribute to all sessions and elements of the course.\n\n\n\nThere are no fees for this course.\n\n\n\n\nAll are welcome to participate. \n\n\n\nLearning Objectives and Learning Outcomes\n\n\n\nLearning Objectives \n\n\n\n\nTo get acquainted with Learning principles and how they apply to training\n\n\n\nTo be able to select and use training techniques that can help enhance learner engagement and participation\n\n\n\nTo learn how to use assessment and feedback in training\n\n\n\nTo learn about session\, course\, and materials design as well as strategies for making learning engaging\n\n\n\n\nLearning Outcomes \n\n\n\nBy the end of this course\, learners will be able to: \n\n\n\n\nName learning principles that a good teacher/instructor should have in mind\n\n\n\nDescribe at least three training techniques\, drawing on learning principles\n\n\n\nDesign a training session and a course\n\n\n\nDevelop assessment questionnaires\n\n\n\nEnumerate types of materials needed for each part of a training session or course\n\n\n\n\nDescribe strategies to promote engagement amongst learners \n\n\n\nTarget Audience \n\n\n\nThis course is directed towards anyone who is interested in becoming a trainer/instructor\, or improving your training skills. \n\n\n\nPrerequisites\n\n\n\nEntry requirements \n\n\n\nThis course is directed towards anyone who is interested in becoming a trainer/instructor\, or improving your training skills. If you have questions like the following ones\, this course may be very helpful to you. \n\n\n\n\nHow learning works?\n\n\n\nHow do I use learning principles and theories to improve my teaching/training?\n\n\n\nHow do I make my teaching/training more engaging and effective?\n\n\n\nHow should I adjust my teaching/training to different types of learners?\n\n\n\nHow do I ensure learning progress?\n\n\n\nHow can I assess whether my students are actually understanding my lessons? Are they actually learning?\n\n\n\nWhat is the best balance between theory and practice?\n\n\n\nHow can I best assess whether learning is occurring and/or has occurred?\n\n\n\nWhat works in a classroom and what doesn’t?\n\n\n\n\nDue to limited space the course can accommodate a maximum of 25 participants. If we receive more applications\, participants will be selected based on selection criteria: Priority will be given to applicants from SciLifeLab infrastructures\, institutes and organizations across the Nordic research community\, and to participants from Nordic ELIXIR nodes. \n\n\n\nSyllabus\n\n\n\nPlease see the course website\, which will be updated regularly\, for more information: https://scilifelab-training.github.io/train-the-trainer/2403/
URL:https://www.scilifelab.se/event/scilifelab-train-the-trainer-course/
LOCATION:Online event via Zoom
CATEGORIES:Course
ORGANIZER;CN="Training Hub":MAILTO:traininghub@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20240411T120000
DTEND;TZID=Europe/Stockholm:20240411T130000
DTSTAMP:20260404T025940
CREATED:20240102T095526Z
LAST-MODIFIED:20240403T110953Z
UID:10001089-1712836800-1712840400@www.scilifelab.se
SUMMARY:Campus Solna Seminar Series: Maeve Long
DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an  initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nThis week:\n\n\n\n\n\n\nMaeve Long\n\n\n\nThomas Helleday – alpha 5 \n\n\n\nMitochondrial OGG1\, a novel drug target in leukemia. \n\n\n\n\n\n\n\n\n\n \n\n\n\n \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page.
URL:https://www.scilifelab.se/event/campus-solna-seminar-series-maeve-long-krzysztof-szkop/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Community
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/09/IMG_20221103_123412496_HDR2-scaled.jpg
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20240412T090000
DTEND;TZID=Europe/Stockholm:20240412T163000
DTSTAMP:20260404T025940
CREATED:20240209T153146Z
LAST-MODIFIED:20240403T065740Z
UID:10001151-1712912400-1712939400@www.scilifelab.se
SUMMARY:Theranostics- the use of radiolabelled compounds for therapy and diagnosis 
DESCRIPTION:Theranostics. Image Courtesy of Marika Nestor.\n\n\n\nWelcome to a symposium arranged by the Drug Discovery and Development platform together with the Department of Immunology\, Genetics and Pathology at Uppsala University and the Department of Oncology and Pathology at Karolinska Institutet. You can expect to learn and discuss different topics reaching from selecting a target for therapy\, the research process to develop a candidate drug to the regulatory framework for theranostics. \n\n\n\n \n\n\n\nTheranostics is a term used to describe when radioactive drugs are used as diagnostic and therapeutic pairs. Receptors that are overexpressed in the diseased tissue\, e.g. tumors\, are used to guide the drug to the target. The radiation can then either be used to for imaging or for therapy depending on the radionuclide used. Developing a theranostic agent could be a feasible way to reach the clinic and SciLifeLab is well suited to catalyze this process. We have gathered renowned speakers to discuss different aspects of the process from bench to bedside. We envision to inspire researcher with clinically relevant ideas to consider this relatively new technique as a feasible approach to reach the clinic. We also hope to gather researchers that are already in the field as well as infrastructure personnel. \n\n\n\nRegister here\n\n\n\n\n\n\n\nProgram\n\n\n\n9.00-9.20 Welcome and Introduction to SciLifeLab \n\n\n\n9.20-10.10 “Theranostics and Radiomolecular Precision Oncology: Navigating the Past and Charting the Future of Nuclear Medicine.” (Professor Richard Baum\, Curanosticum\, Wiesbaden-Frankfurt)  \n\n\n\n10.10-10.40 Coffee and posters  \n\n\n\n10.40-11.20 Why We Need New Targets for Radiopharmaceutical Therapy – and How to Find Them (Assistant Professor Kasper Karlsson\, KI)   \n\n\n\n11.20-12 ” Translating innovation: Advancing the cancer radiopharmaceutical 177Lu-AKIR001 to clinical trials” (Professor Marika Nestor\, UU)  \n\n\n\n12-13.00 Lunch and posters  \n\n\n\n13.00-13.40 Dosimetry for Biologists: From Mouse Model Extrapolations to Considerations for Implementation of Radiopharmaceuticals in Clinical Practice (Professor Peter Bernhardt\, GU) \n\n\n\n13.40-14.20 Theranostics from a Regulatory Perspective (Dr Anna Sundlöf\, Clinical Assessor\, Swedish Medical Product Agency) \n\n\n\n14.20-15 Development of a Theranostic Product Pair for Patients with HER2 Expressing Disease: An Industrial Perspective (Professor Fredrik Frejd\, CSO\, Affibody AB)  \n\n\n\n15.00-15.30 Coffee and posters \n\n\n\n15.30-16.00 Theranostic Specific Infrastructures for Your Research/Project: From Bench to Bedside – Associate professor Thuy Tran and Associate Professor Renske Altena\, KI \n\n\n\n16.00-16.30 Panel Discussion \n\n\n\n16.30 Concluding Remarks \n\n\n\n \n\n\n\nOrganizing committee\n\n\n\nMarika Nestor\, Uppsala UniversityThuy Tran\, Karolinska InstitutetJonas Rehn\, Elekta Ulrika Yngve\, SciLifeLab Drug Discovery and Development Platform
URL:https://www.scilifelab.se/event/theranostics-the-use-of-radiolabelled-compounds-for-therapy-and-diagnosis/
LOCATION:Lecture Hall IX\,  University Main Building\, Uppsala\, Biskopsgatan 3\, Uppsala\, 75105\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2024/02/Theranosticsbild5-1-1.png
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20240415T080000
DTEND;TZID=Europe/Stockholm:20240416T170000
DTSTAMP:20260404T025940
CREATED:20240318T115849Z
LAST-MODIFIED:20240318T120120Z
UID:10001209-1713168000-1713286800@www.scilifelab.se
SUMMARY:A primer on cryo-EM data processing using cryoSPARC on BerzeLiUs
DESCRIPTION:National course open for PhD students\, postdocs\, researchers and other employees in all Swedish universities\, in need of cryo-EM data processing using national supercomputing resources. \n\n\n\nApplication\n\n\n\nImportant dates and information\n\n\n\nApplication opens: 2024-03-18Application closes: 2024-04-07Confirmation to accepted students: 2024-04-08 \n\n\n\nCourse Leader and teachers: Tim Schulte \, Piotr Draczkowski \n\n\n\nIn case you miss information on any of the above dates\, please contact: Tim Schulte \, Piotr Draczkowski \n\n\n\nCourse fee\n\n\n\nThe course is free of charge. \n\n\n\nCourse content\n\n\n\nWhat is this about? \n\n\n\nHow to use Berzelius compute cluster for cryo-EM data processing. We will process the beta- galactosidase dataset\, known from the Relion tutorials\, but applying cryoSPARC on BerzeLiUs\, as implemented by the PReSTO team. \n\n\n\nThe main purpose of this training is to learn how to: \n\n\n\n● access and use BerzeLiUs● apply Presto\, especially cryoSPARC on BerzeLiUs to process cryo-EM data \n\n\n\nWho should apply?\n\n\n\nAnyone interested in processing cryo-EM data using national supercomputing resources\, especially BerzeLiUs cluster. This is a primer for data processing on Berzelius\, not an introduction to cryo-EM. We expect applicants to be familiar with the general concepts of cryo-EM and data processing. Participants need to have a computer to access Berzelius remotely. \n\n\n\nLearning outcomes\n\n\n\nUpon completion of this course\, you will be able to:’ \n\n\n\n● apply for the allocation of computational resources on BerzeLiUs cluster● set up and start your cryoSPARC instance on BerzeLiUs● submit jobs to the cluster using the predefined submission lines● manage the jobs● process cryo-EM data on BezleLIUs using a standard data processing pipeline in CryoSPARC \n\n\n\nEntry requirements\n\n\n\nThe following is a list of skills required for being able to follow the course and complete the exercises: \n\n\n\n● Basic knowledge of Linux● Ability to bring your own laptop● Set up an account in NAISS SUPR (supr.naiss.se) \n\n\n\nDesirable\, but not essential\, skills increasing the output of the course\, include: \n\n\n\n● Experience in processing cryo-EM data using any of the available software packages \n\n\n\nDue to limited space the course can accommodate a maximum of 15 participants. If we receive more applications\, participants will be selected based on selection criteria\, including (but not limited to) correct entry requirements\, motivation to attend the course\, as well as gender and geographical balance.
URL:https://www.scilifelab.se/event/a-primer-on-cryo-em-data-processing-using-cryosparc-on-berzelius/
LOCATION:Online event via Zoom
CATEGORIES:Course
ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20240416T083000
DTEND;TZID=Europe/Stockholm:20240418T150000
DTSTAMP:20260404T025940
CREATED:20231130T105230Z
LAST-MODIFIED:20240409T082417Z
UID:10001053-1713256200-1713452400@www.scilifelab.se
SUMMARY:IEC meeting
DESCRIPTION:SciLifeLab Infrastructure welcomes the International Evaluation Committee (IEC) to Uppsala\, Sweden\, on April 16-18 for a panel meeting during the Evaluation of the SciLifeLab Infrastructure. This international evaluation\, part of a series conducted every four years\, plays a crucial role in guiding SciLifeLab’s strategic development. \n\n\n\nThe international evaluation of the SciLifeLab infrastructure 2024 consists in short of  \n\n\n\ni. individual pre-evaluation done by each IEC member  \n\n\n\nii. the IEC meeting in Uppsala  \n\n\n\niii. the IEC report\, a joint evaluation report from IEC with consensus grades and assessments. In addition\, we would like input and recommendations in the IEC report on the centrally coordinated SciLifeLab functions Precision Medicine\, Planetary Biology and Pandemic Laboratory Preparedness\, Training Hub and Data Centre.  \n\n\n\n The IEC meeting in Uppsala provides an opportunity for in-depth discussions and evaluation of each platform and unit.  \n\n\n\nProgram\n\n\n\nProgram-IEC-2024Download\n\n\n\n\n\nMembers of the International Evaluation Committee\n\n\n\nIEC-membersDownload\n\n\n\n\n\n\n\nBiosketch IEC members\n\n\n\nBIOSKETCH-IECDownload
URL:https://www.scilifelab.se/event/iec-site-visit/
LOCATION:Navet\, SciLifeLab Uppsala\, SciLifeLab Uppsala\, BMC C11\, Husargatan 3\, Uppsala\, 75237\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/06/Navet-fasad-innegård-scaled.jpg
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20240416T090000
DTEND;TZID=Europe/Stockholm:20240418T170000
DTSTAMP:20260404T025940
CREATED:20240103T100130Z
LAST-MODIFIED:20240103T100350Z
UID:10001098-1713258000-1713459600@www.scilifelab.se
SUMMARY:Workshop on Data Visualization in R
DESCRIPTION:A national course open for PhD students (prioritized)\, postdocs\, researchers and other employees within Swedish universities who are interested in learning to produce publication quality plots using different packages in R. \n\n\n\nThe course is organized by NBIS (ELIXIR-SE). \n\n\n\nResponsible teachers: Lokeshwaran Manoharan\, Markus Ringner\, Louella Vasquez\, Katja Kozjek \n\n\n\nContact information: edu.plotting.r@nbis.se \n\n\n\n\n\n\n\nImportant dates\n\n\n\nApplication open: January 8\, 2024 \n\n\n\nApplication deadline: March 22\, 2024 \n\n\n\nConfirmation to accepted participants: March 25\, 2024 \n\n\n\n\n\n\n\n\n\nApplication\n\n\n\n\n\nCourse Website (2023 version)\n\n\n\n\n\n\n\n\n\nCourse fee\n\n\n\nThe fee for this on-site workshop is 2000 SEK to be paid by invoice to NBIS. Please note that NBIS cannot invoice individuals so we need your institutional invoicing address. The fee covers lunches\, coffee and a course dinner. Those who accept the spot and then do not attend without prior notification will also be invoiced. \n\n\n\nNote that travel and accommodation is not included in the fee and must be arranged by the participants. \n\n\n\n\n\n\n\nCourse description\n\n\n\nThis course aims to help researchers to visualize their data in different ways using R. This course will teach how to produce publication grade figures using R. A part of this course is also about making interactive plots that the researchers can view and share in a web-server to make interactive visualizations of their data. \n\n\n\n\n\n\n\nCourse content\n\n\n\nIn this course you will learn how to visualize your data in R. \n\n\n\nIn particular\, you will learn how to: \n\n\n\n\nformat the data necessary for ggplot\n\n\n\nmake bar-charts\, box-plots and others using ggplot\n\n\n\nmake PCA plots in ggplot\n\n\n\nuse R packages for heatmaps\n\n\n\nplot data on maps using R (optional)\n\n\n\nplot and handle phylogenetic trees in R (optional)\n\n\n\nmake interactive plots in R using Rshiny\n\n\n\nhost a Rshiny app in one of the available servers\n\n\n\n\n\n\n\n\nLearning outcomes\n\n\n\nBy the end of the course the participant will be able to: \n\n\n\n\nhandle data in R for visualizations\n\n\n\napply the grammar efficiently in ggplot to obtain the desired plot\n\n\n\ncombine different data and/or different plots that are of publication-grade\n\n\n\nwrite your own simple Rshiny app\n\n\n\ndeploy Rshiny apps in public servers. \n\n\n\n\n\n\n\n\nEntry requirements\n\n\n\nRequired for being able to follow the course and to complete the plotting exercises: \n\n\n\n\nfamiliarity with using R and Rstudio\n\n\n\na computer with R and Rstudio installed\n\n\n\ninstallation of necessary R packages prior to the start of the course\n\n\n\n\n\n\n\n\nSelection criteria\n\n\n\nThe course can accommodate 25 participants. Selection criteria include correct entry requirements\, motivation to attend the course as well as gender and geographical balance. Academic affiliated registrants are prioritized prior to participants from the industry. \n\n\n\nPlease note that NBIS training events do not provide any formal university credits. The training content is estimated to correspond to a certain number of credits\, however the estimated credits are just guidelines. If formal credits are crucial\, the student needs to confer with the home department before submitting a course application in order to establish whether the course is valid for formal credits or not.
URL:https://www.scilifelab.se/event/workshop-on-data-visualization-in-r/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Course
ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20240416T121500
DTEND;TZID=Europe/Stockholm:20240416T130000
DTSTAMP:20260404T025940
CREATED:20240409T072912Z
LAST-MODIFIED:20240409T072914Z
UID:10001226-1713269700-1713272400@www.scilifelab.se
SUMMARY:InfraVis\, a National Research Infrastructure For Data Visualization
DESCRIPTION:In the frame of the “SciLifeLab Site Umeå / KBC Infrastructure Seminar Series”\, the seminars will be organised every second Tuesday during spring 2024. The seminars will be held in a hybrid format – IRL in Glasburen\, KBC\, Umeå\, and online via Zoom. Learn more about the seminar series and Schedule for Spring 2024 here. \n\n\n\nOn 16 April\, at 12:15\, SciLifeLab Site Umeå / KBC Infrastructure Seminar Series presents: \n\n\n\nInfraVis\, a National Research Infrastructure For Data Visualization\n\n\n\nSpeakers: \n\n\n\nKarin Danielsson\, Associate Professor at the Department of Informatics\, Director of Humlab at the Faculty of Arts and Humanities\, and a member of InfraVis Steering Committee \n\n\n\nEvelina Liliequist\, Associate Professor at Humlab\, researcher at Centre for Regional Science at Umeå University\, and the node coordinator for UmU/Humlab in InfraVis \n\n\n\nDescription: The seminar will be a presentation of InfraVis\, a National Research Infrastructure For Data Visualization funded by VR. InfraVis aims to significantly improve data analysis support\, address new challenges involving large and complex data and create competitive advantages for researchers associated with Swedish universities or research institutes. \n\n\n\nInfraVis assists individual researchers\, research teams and research projects to visualize their research data from any scientific domain. Our definition of the term “visualization” includes all stages of data analysis in the visualization pipeline. Statistics\, machine learning\, and other tools are a part of the InfraVis arsenal. The data-driven analysis produces results that\, through methodical design\, have visual representations. These visual representations\, when interactive\, are visualizations that exploit the extraordinary ability of the human brain to detect\, classify\, and relate patterns and anomalies visually. InfraVis experts give access to state-of-the-art visualization competence\, support\, equipment\, training\, and methods. \n\n\n\nWe aim for more researchers at UmU to take advantage of the support InfraVis can bring. During the seminar we will explain further the possibilities with the infrastructure\, visualization expertise available\, and present some examples of InfraVis visualizations. \n\n\n\nLink to website: https://infravis.se \n\n\n\nRegistration: Sign up for the IRL seminar and reserve your free lunch (sandwich\, drink\, and little sweet snack) by Monday\, 15 April\, 10:00 a.m.: \n\n\n\n\nhttps://www.umu.se/en/chemical-biological-centre/kbc_events/registration-form-infrastructure-seminar2\n\n\n\n\nor follow online (registration is not required): \n\n\n\nMeeting URL: https://umu.zoom.us/j/67909354528Meeting ID: 679 0935 4528 \n\n\n\nOrganisers: SciLifeLab Site Umeå and Chemical Biological Centre (KBC)\, Umeå
URL:https://www.scilifelab.se/event/infravis-a-national-research-infrastructure-for-data-visualization/
LOCATION:Glasburen Seminar Room\, Chemical Biological Centre (KBC) Building\, Umeå University\, Umeå\, 901 87\, Sweden
CATEGORIES:Event
ORGANIZER;CN="SciLifeLab Ume%C3%A5":MAILTO:umea@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20240416T140000
DTEND;TZID=Europe/Stockholm:20240416T143000
DTSTAMP:20260404T025940
CREATED:20240405T094913Z
LAST-MODIFIED:20240405T094916Z
UID:10001225-1713276000-1713277800@www.scilifelab.se
SUMMARY:CSI Seminar: Practical Tools for Mental Fitness
DESCRIPTION:We are excited to host a new Coaching in Science Initiative (CSI) Seminar titled: ‘Practical Tools for Mental Fitness’ \n\n\n\nIn today’s fast-paced world\, maintaining mental well-being is essential. Join us as we delve into practical strategies and techniques to strengthen your mental resilience\, lower stress and process emotions. We will equip you with actionable tools to navigate life’s challenges\, including exercises in: mindfulness\, cognitive reframing and simple physical practices that can be done anywhere. \n\n\n\nDate: 16/04/2024 \n\n\n\nTime: 14:00 – 14:30 \n\n\n\nZoom link: https://kth-se.zoom.us/j/66943463637 \n\n\n\nOn-site location: Gamma 2 lunch room \n\n\n\nWe will begin with a ~ 20 min talk\, held in Solna and over zoom. Then proceed with a reflection and discussion held only on-site. We encourage other sites to form watch parties\, by listening in together to the talk and then hold their own discussion afterwards. Hopefully seeding many local chapters of CSI. \n\n\n\nTo help facilitate discussion and reflection\, consider the following starter questions: \n\n\n\nAwareness: where do we experience mental fitness in our lives? \n\n\n\nAnalysis: how well do I currently engage in mental fitness practices? \n\n\n\nAlternative: how could we relate to mental fitness\, in ourselves and others? \n\n\n\nAction: how will knowledge of mental fitness change my decisions going forward? \n\n\n\nPlease forward this to friends and colleagues! \n\n\n\nYours sincerely\, \n\n\n\nThe CSI Team \n\n\n\nhttps://www.thecoachinginscienceinitiative.org/\n\n\n\nhttps://www.youtube.com/@TheCoachinginScienceInitiative
URL:https://www.scilifelab.se/event/csi-seminar-practical-tools-for-mental-fitness/
LOCATION:Gamma 2 Lunchroom\, SciLifeLab\, Tomtebodavägen 23\, Solna\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2024/04/CSI_logo_text_mail.png
ORGANIZER;CN="Coaching in Science Initiative (CSI)":MAILTO:sami.saarenpaa@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20240416T150000
DTEND;TZID=Europe/Stockholm:20240416T160000
DTSTAMP:20260404T025940
CREATED:20240305T103431Z
LAST-MODIFIED:20240326T124907Z
UID:10001188-1713279600-1713283200@www.scilifelab.se
SUMMARY:Sequenceable DNA tools for Medicine: Transcriptomics and Antibody alternatives
DESCRIPTION:Spotlight Seminar series presents Erik Benson\, SciLifeLab Fellow at Karolinska Institutet \n\n\n\nErik Benson is a SciLifeLab Fellow at the department of Microbiology\, Tumor and Cell Biology at KI since January 2024. He is working on combining DNA structures with sequencing and selection. He previously held postdoc positions at the department of Physics\, University of Oxford and the department of Gene Technology at KTH. He did his PhD at Karolinska Institute and MSc in medical physics in Lund. \n\n\n\nHost: Jean Hausser\, KI
URL:https://www.scilifelab.se/event/sequenceable-dna-tools-for-medicine-transcriptomics-and-antibody-alternatives/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2023/10/Campus-solna-seminar-picture.jpg
ORGANIZER;CN="Spotlight Seminar Series":MAILTO:events@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20240417T100000
DTEND;TZID=Europe/Stockholm:20240417T110000
DTSTAMP:20260404T025940
CREATED:20240326T154451Z
LAST-MODIFIED:20251204T144742Z
UID:10001218-1713348000-1713351600@www.scilifelab.se
SUMMARY:Research involving human data - what do I need to think of as a researcher?
DESCRIPTION:This seminar will focus on collecting and using personal data in research. We will guide you through the different phases of a typical research project and discuss some commonly asked questions. We will\, for example\, talk about practical aspects of the ethical review\, GDPR\, and how to share sensitive data. This is the third event in the SciLifeLab Data Management seminar series Spring 2024. \n\n\n\nWhen: Wednesday April 17\, 10-11 CEST (Zoom) \n\n\n\nSpeakers: Markus Englund and Erik Hedman\, Data Stewards\, NBIS. \n\n\n\nRegister\n\n\n\nSciLifeLab Data Management seminar series is an event series by the SciLifeLab Data Centre and NBIS joint Data Management team aimed at both the life science research community and infrastructure\, and others with an interest in research data management in life sciences. The events will showcase how to put the FAIR principles\, and good data management into practice. The goal of the events in this seminar series is to provide interesting seminars around topics related to research data management in general but also to foster discussions around best practices and how they can be improved. The events takes place virtually (over Zoom) and are open to everyone (researchers\, staff\, RDM professionals etc.) working at or affiliated with a Swedish research institute or university. Each event is scheduled for 60 minutes\, including 15 minutes for discussions and Q & A. The videos will be published openly after the seminars at the SciLifeLab YouTube channel.More information about SciLifeLab Data Centre and NBIS joint Data Management team: https://data-guidelines.scilifelab.se/ \n\n\n\nWelcome! \n\n\n\nOrganisers: SciLifeLab Data Centre and NBIS National Bioinformatics Infrastructure SwedenFor more information or inquiries please contact: data-management@scilifelab.se
URL:https://www.scilifelab.se/event/research-involving-human-data-what_to-think_of/
CATEGORIES:Event
ORGANIZER;CN="Open Science Seminar Series":MAILTO:data-management@scilifelab.se
LOCATION:
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20240418T100000
DTEND;TZID=Europe/Stockholm:20240418T110000
DTSTAMP:20260404T025940
CREATED:20240328T075011Z
LAST-MODIFIED:20240404T101946Z
UID:10001214-1713434400-1713438000@www.scilifelab.se
SUMMARY:Leveraging supercomputers for data-driven life science research: examples from Berzelius
DESCRIPTION:This event is part of the Tools for AI/ML research in life sciences event series arranged by the SciLifeLab Data Centre. This webinar is organized in collaboration with the National Supercomputer Centre\, LiU as well as the EuroHPC National Competence Centre Sweden (ENCCS). \n\n\n\nTitle: Leveraging supercomputers for data-driven life science research: examples of use cases and introduction to Berzelius \n\n\n\nSpeaker: Soumi Chaki and Xuan Gu (National Supercomputer Centre\, Linköping University)\, Kimmo Kartasalo (Karolinska Institute)\, Claudio Mirabello (Linköping University). \n\n\n\nWhere and when: April 18\, 2024 at 10:00-11:00 Stockholm time\, online. Registration is open till April 18 at 9:00.  \n\n\n\nAbstract:  \n\n\n\nAgenda:10:00-10:05 – Introduction to supercomputers and Berzelius10:05-10:20 – Developing computational pathology AI models for improved prostate cancer diagnostics and prognostics using Berzelius (Kimmo Kartasalo\, Post-doctoral researcher\, Karolinska Institute)10:20-10:35 – Modelling large protein complexes on Berzelius (Claudio Mirabello\, Principal Research Engineer\, Docent\, Linköping University)10:35-10:50 – Resource allocation procedure and user support available on Berzelius10:50-11:00 – Q&A session \n\n\n\nPowerful GPU supercomputers allow to carry out large-scale experiments in a fraction of time that it would otherwise take as well as pursue research projects that would otherwise not be possible. Life science researchers at Swedish universities can apply and make use of the Berzelius AI/ML cluster at the National Supercomputer Center in Linköping. In this one hour long webinar two researchers will present how they use Berzelius in their work and what research it allows them to carry out. In addition\, we will present the technical specifications of Berzelius\, the resource allocation procedure\, as well as the available user support. We will give a short demonstration on how to request GPU resources on Berzelius and run scripts/software on the allocated GPU(s). This webinar is particularly tailored for researchers interested in and working with AI/ML methods. \n\n\n\nRegister to join the event\n\n\n\nMore about the event series: \n\n\n\nTools for AI/ML research in life sciences is an event series by the SciLifeLab Data Centre aimed at life science researchers who use machine learning methods in their work. The goal of the events in this series is to provide introductions to different tools for ML research but also to foster discussions around our practices and how they can be improved. The events takes place virtually (over Zoom) and are open to researchers in Sweden and beyond. Each event is scheduled for 60 minutes\, consisting of a talk and an extended discussion. Follow the page of the event series to learn about future seminars. \n\n\n\nFor questions about the events please contact the organizing team by emailing  serve@scilifelab.se  \n\n\n\n \n\n\n\nScientific lead: Prof. Ola Spjuth\, SciLifeLab Data Centre and Uppsala University and DDLS \n\n\n\nContact information: serve@scilifelab.se
URL:https://www.scilifelab.se/event/leveraging-supercomputers/
LOCATION:Online event via Zoom
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20240418T120000
DTEND;TZID=Europe/Stockholm:20240418T130000
DTSTAMP:20260404T025940
CREATED:20240102T095626Z
LAST-MODIFIED:20240404T113523Z
UID:10001090-1713441600-1713445200@www.scilifelab.se
SUMMARY:Campus Solna Seminar Series: Hailey Sounart & Emil Sporre
DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an  initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nThis week:\n\n\n\n\n\n\nHailey Sounart\n\n\n\nStefania Giacomello – alpha 3 \n\n\n\nExploring the effects of host sex\, high-fat diet\, and estrogen receptor knockout on the gut microbiome diversity: a spatial perspective \n\n\n\n\n\nEmil Sporre\n\n\n\nPaul Hudson – gamma 5 \n\n\n\nInvestigating the regulatory effects of alarmone ppGpp in Cyanobacteria and its potential for growth arrested production \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page.
URL:https://www.scilifelab.se/event/campus-solna-seminar-series-hailey-sounart-emil-sporre/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Community
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/09/IMG_20221103_120135408_HDR-scaled.jpg
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20240418T150000
DTEND;TZID=Europe/Stockholm:20240418T160000
DTSTAMP:20260404T025940
CREATED:20240311T085459Z
LAST-MODIFIED:20240311T085500Z
UID:10001194-1713452400-1713456000@www.scilifelab.se
SUMMARY:Training Hub Fika
DESCRIPTION:We are thrilled to invite you to the first series of Training Hub Fika – grab your Thursday afternoon coffee and join us online for short talks and discussion on topics from digitalizing courses to using the Training Portal to career-spanning learning!  \n\n\n\nEveryone is welcome to attend and chat about supporting knowledge transfer and personnel development across Sweden. As one of SciLifeLab’s newest entities\, we look forward to meeting people from Lund to Umeå and sharing our support and expertise!
URL:https://www.scilifelab.se/event/training-hub-fika-3/
LOCATION:Online event via Zoom
CATEGORIES:Community
ORGANIZER;CN="Training Hub":MAILTO:traininghub@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20240419T100000
DTEND;TZID=Europe/Stockholm:20240419T110000
DTSTAMP:20260404T025940
CREATED:20240115T121853Z
LAST-MODIFIED:20240115T121929Z
UID:10001109-1713520800-1713524400@www.scilifelab.se
SUMMARY:Model-guided ML approaches to integrative omics analyses
DESCRIPTION:NBIS\, Scilifelab’s Bioinformatics platform\, arranges an open AI and IO Seminar Series aimed at knowledge-sharing about Artificial Intelligence and Integrative Omics (AI & IO) analysis and applications in the Life Science community. The seminar series is open to everyone. The seminar is run over Zoom on the third Friday of the month during academic terms\, typically between 10 and 11 am\, with ca. 45 min long presentation and 15 min discussion. \n\n\n\nFor further info\, please see this website. \n\n\n\n \n\n\n\n\n\n\n\nModel-guided ML approaches to integrative omics analyses\n\n\n\nCemal Erdem\, DDLS fellow\, Umeå University \n\n\n\nClick here to join zoom conference
URL:https://www.scilifelab.se/event/model-guided-ml-approaches-to-integrative-omics-analyses/
LOCATION:Online event via Zoom
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20240422T080000
DTEND;TZID=Europe/Stockholm:20240426T170000
DTSTAMP:20260404T025940
CREATED:20240124T152112Z
LAST-MODIFIED:20240422T093632Z
UID:10001121-1713772800-1714150800@www.scilifelab.se
SUMMARY:TEM sample preparation practical course
DESCRIPTION:This is a practical course on sample preparation for TEM and includes: \n\n\n\n\nUltra-microtome sectioning\n\n\n\nChemical fixation\n\n\n\nPlastic embedding\n\n\n\nTEM imaging\n\n\n\nHigh-pressure freezing & freeze substitution\n\n\n\nImmunolabeling techniques (Immunogold\, CLEM)\n\n\n\nVolume EM (FIB-SEM & Tomography)\n\n\n\n\nParticipants will practice TEM sample preparation and TEM imaging with a sample from their own project. Lab space limits the number of participants to 8\, chosen by motivation and project aim. Write a short project description\, motivation for participating and what sample you would like to bring for the course. Fixation and plastic embedding take time\, therefore one test-sample should be brought to be prepared before the course\, and a new test-sample is brought for the first day. \n\n\n\nIn addition\, a small presentation about an EM-project idea of your own should be prepared and presented on the last day. \n\n\n\nParticipants should attend all theoretical and practical parts of the course to receive a certificate of 1\,5 hp. \n\n\n\nPre-requisite criterion: Basic EM course at UCEM or previous equal experiences with EM methods. \n\n\n\nTeachers: Sara Henriksson\, Agnieszka Ziolkowska\, Narin Mohamad and Linda Sandblad \n\n\n\nContact: linda.sandblad@umu.se \n\n\n\nApplication deadline: 27 March 2024. \n\n\n\nMore Information and registration
URL:https://www.scilifelab.se/event/tem-sample-preparation-practical-course/
LOCATION:KBC Building Umeå\, Linneaus Väg 6\, Umeå
CATEGORIES:Course
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2024/01/UCEM_logo_pos.png
ORGANIZER;CN="UCEM Ume%C3%A5":MAILTO:hussein.haggag@umu.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20240422T080000
DTEND;TZID=Europe/Stockholm:20240426T170000
DTSTAMP:20260404T025940
CREATED:20240131T120230Z
LAST-MODIFIED:20240314T093013Z
UID:10001134-1713772800-1714150800@www.scilifelab.se
SUMMARY:Introduction to Biostatistics and Machine Learning
DESCRIPTION:National course open for PhD students\, postdocs\, researchers and other employees in need of biostatistical and machine learning skills within all Swedish universities. The course is geared towards life scientists wanting to be able to understand and use basic statistical methods. It would also suit those already applying biostatistical methods but have never got a chance to reflect on and truly grasp the basic statistical concepts\, such as the commonly misinterpreted p-value. \n\n\n\nImportant dates\n\n\n\nApplication open: now \n\n\n\nApplication closes: 2024-03-24 \n\n\n\nConfirmation to accepted students:  2024-03-28 \n\n\n\nResponsible teachers:  Olga Dethlefsen\, Eva Freyhult \n\n\n\nIf you do not receive information according to the above dates\, please contact edu.ml-biostats@nbis.se \n\n\n\nCourse fee\n\n\n\nA course fee of 3000 SEK will be invoiced to accepted participants. The fee includes lunches\, coffee and snacks. \n\n\n\n*Please note that NBIS cannot invoice individuals \n\n\n\nCourse content\n\n\n\n\nProbability theory\n\n\n\nHypothesis testing and confidence intervals\n\n\n\nResampling\n\n\n\nLinear regression methods\n\n\n\nIntroduction to generalized linear models\n\n\n\nModel evaluation\n\n\n\nUnsupervised learning incl. clustering and dimension reduction methods\n\n\n\nSupervised learning incl. classification\n\n\n\n\nEducation\n\n\n\nIn this course we focus on an active learning approach. The course participants are expected to do some pre-course reading and exercises\, corresponding up to 40h studying. The education consists of teaching blocks alternating between lectures\, group discussions\, live coding sessions etc. \n\n\n\nEntry requirements\n\n\n\n\nBasic R programming skills (check your R skills by taking our self-assessment test)\n\n\n\nBYOL (bring your own laptop) with R and RStudio installed\n\n\n\nNo prior biostatistical knowledge is assumed\, only basic math skills (pre-course studying materials will be available upon course acceptance)\n\n\n\n\nThe course can accommodate a maximum of 25 participants. If we receive more applications\, participants will be selected based on several criteria. Selection criteria include correct entry requirements\, motivation to attend the course as well as gender and geographical balance. \n\n\n\nRegistration
URL:https://www.scilifelab.se/event/introduction-to-biostatistics-and-machine-learning-3/
LOCATION:BMC Trippelrummet\, Husargatan 3\, entrance C11\, Uppsala\, Sweden
CATEGORIES:Course
ATTACH;FMTTYPE=image/png:https://www.scilifelab.se/wp-content/uploads/2024/01/course-image.png
ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20240422T080000
DTEND;TZID=Europe/Stockholm:20240426T170000
DTSTAMP:20260404T025940
CREATED:20240219T105136Z
LAST-MODIFIED:20240220T100128Z
UID:10001162-1713772800-1714150800@www.scilifelab.se
SUMMARY:NBIS/ELIXIR-SE Tools for Reproducible Research
DESCRIPTION:NBIS / ELIXIR-SE course open for PhD students\, postdocs\, group leaders and core facility staff at all Swedish universities interested in making their computational analysis more reproducible. \n\n\n\nCourse Website\n\n\n\nImportant dates and information\n\n\n\nApplication opens: 2024-02-19 \n\n\n\nApplication closes: 2024-03-18 \n\n\n\nConfirmation to accepted students: 2024-03-22 \n\n\n\nCourse Leader and teachers: \n\n\n\n\nJohn Sundh (CL)\n\n\n\nErik Fasterius (CL)\n\n\n\nEstelle Proux-Wéra\n\n\n\nLokeshwaran Manoharan\n\n\n\nTomas Larsson\n\n\n\nCormac Kinsella\n\n\n\nMahesh Binzer-Panchal\n\n\n\n\nIn case you miss information on any of the above dates\, please contact:  edu.trr@nbis.se \n\n\n\nCourse fee \n\n\n\nA course fee* of 3000 SEK will be invoiced to accepted participants. The fee includes lunches\, coffee/tea and snacks as well as a course dinner. \n\n\n\n*Please note that NBIS cannot invoice individuals \n\n\n\nCourse content\n\n\n\nThis course will introduce best practices in making research reproducible – from code tracking to software packaging and documentation – via short lectures and hands-on tutorials. \n\n\n\nTopics covered will include: \n\n\n\n\nGood practices for data analysis\n\n\n\nVersion control and collaborative code development\n\n\n\nPackage and environment management\n\n\n\nWorkflow management\n\n\n\nDocumentation and reporting\n\n\n\nContainerized computational environments\n\n\n\n\nLearning Outcomes \n\n\n\nUpon completion of this course\, you will be able to: \n\n\n\n\nOrganize and structure computational projects\n\n\n\nTrack changes and collaborate on code using Git\n\n\n\nInstall packages and manage software environments using Conda\n\n\n\nStructure computational steps into workflows with Snakemake and Nextflow\n\n\n\nCreate automated reports and document their analyses with Quarto and Jupyter\n\n\n\nPackage and distribute computational environments using Docker and Singularity\n\n\n\n\nEntry requirements \n\n\n\nThe following is a list of skills required for being able to follow the course and complete the exercises: \n\n\n\n\nFamiliarity with using the terminal (e.g. be familiar with commands such as ls\, cd\, touch\, mkdir\, pwd\, wget\, man\, etc.)\n\n\n\nSome knowledge in R and/or python is beneficial but not strictly required\n\n\n\n\nDue to limited space the course can accommodate a maximum of 20 participants. If we receive more applications\, participants will be selected based on selection criteria\, including (but not limited to) correct entry requirements\, motivation to attend the course\, as well as gender and geographical balance. \n\n\n\nContact information: edu.trr@nbis.se
URL:https://www.scilifelab.se/event/nbis-elixir-se-tools-for-reproducible-research-2/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Course
ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20240423T080000
DTEND;TZID=Europe/Stockholm:20240425T170000
DTSTAMP:20260404T025940
CREATED:20231114T122916Z
LAST-MODIFIED:20231115T133031Z
UID:10001032-1713859200-1714064400@www.scilifelab.se
SUMMARY:Introduction to Data Management Practices
DESCRIPTION:National Bioinformatics Infrastructure Sweden (NBIS) gives a course in research data management practices. This workshop in Data Management is a unique event to provide an introduction to practices for better management of data for PhD students\, postdocs\, researchers\, and other employees within all Swedish universities. The workshop will introduce important aspects of research data management through a series of lectures\, demonstrations\, and hands-on computer exercises. The course is intended for researchers who want to take the first steps towards a more systematic and reproducible approach to analysing and managing research data. \n\n\n\n\n\n\n\nImportant dates\n\n\n\nApplication closes: 2024-03-22 \n\n\n\nInformation to accepted students will be sent: 2024-04-02 \n\n\n\nContact: edu.intro-dm@nbis.se  \n\n\n\n\n\n\n\nApplication\n\n\n\nWorkshop Website\n\n\n\n\n\n\n\n\n\n\n\nFormat & Content\n\n\n\nThis workshop runs on-site in Solna\, Stockholm. Teachers and teaching assistants will be present all week to help with exercises and questions. \n\n\n\nTopics covered will include: \n\n\n\n\nOpen Science and FAIR in practice\n\n\n\nOrganising data\, files and folders in research projects\n\n\n\nDescribing data with metadata\n\n\n\nPublishing data to public data repositories\n\n\n\nCleaning tabular data and metadata with OpenRefine\n\n\n\nWriting basic recipes for data analysis and visualisation with R\n\n\n\nVersioning data\, documents and scripts (e.g. by using Git & GitHub)\n\n\n\nWriting Data Management Plans\n\n\n\n\n\n\n\n\nCourse fee\n\n\n\nThis on-site training event costs 2000 SEK invoiced to the participant’s organisation. If you accept a position and do not participate (no-show)\, you will still be invoiced 2000 SEK. Please note that NBIS cannot invoice individuals. \n\n\n\n\n\n\n\nCredits & Certificate\n\n\n\nPlease note that NBIS training events do not provide any formal university credits. Attendees with full attendance and completion of tasks will be issued a certificate of participation indicating the topics covered and the duration of the workshop. \n\n\n\nDue to limitations in space and capacity\, the course can accommodate a maximum of 25 participants. If we receive more applications\, participants will be selected based on several criteria\, including correct entry information\, motivation to attend the course\, as well as gender and geographical balance. \n\n\n\nFor more detailed information about the workshop\, please visit the workshop website \n\n\n\n\n\n\n\nEntry requirements\n\n\n\nNo previous programming experience is required\, but you are required to bring your own laptop with the required software pre-installed. The course organisers arrange a pre-course event approximately one week prior to the first-course day.
URL:https://www.scilifelab.se/event/introduction-to-data-management-practices-6/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Course
ORGANIZER;CN="NBIS - National Bioinformatics Infrastructure Sweden":MAILTO:education@nbis.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20240423T120000
DTEND;TZID=Europe/Stockholm:20240423T130000
DTSTAMP:20260404T025940
CREATED:20240418T072500Z
LAST-MODIFIED:20240418T072503Z
UID:10001232-1713873600-1713877200@www.scilifelab.se
SUMMARY:Building capacity to upskill the community: How the SciLifeLab Training Hub can help
DESCRIPTION:In the frame of the “SciLifeLab Site Umeå / KBC Infrastructure Seminar Series”\, the seminars will be organised every second Tuesday during spring 2024. The seminars will be held in a hybrid format – IRL in Glasburen\, KBC\, Umeå\, and online via Zoom. Learn more about the seminar series and Schedule for Spring 2024 here. \n\n\n\n \n\n\n\nOn 23 April\, at 12:00\, SciLifeLab Site Umeå / KBC Infrastructure Seminar Series presents: \n\n\n\nBuilding capacity to upskill the community: How the SciLifeLab Training Hub can help\n\n\n\nPresenter: \n\n\n\nNina Norgren\, Training Manager\, Umeå University. \n\n\n\nDescription: Come join us for a session that is all about boosting skills and training the community with the Scilifelab Training Hub. We will be presenting how the Training Hub can support your platform/unit in designing and delivering training to your users. Whether you are just starting out or looking to level up your skills\, we have resources and support to help you along the way. Everyone interested in training is welcome! \n\n\n\nMore about SciLifeLab Training Hub: https://www.scilifelab.se/training/ \n\n\n\nVisit the new Training Portal to see all our courses and materials: https://training.scilifelab.se/ \n\n\n\nRegistration: Sign up for the IRL seminar and reserve your free lunch (sandwich\, drink\, and little sweet snack) by Monday\, 22 April\, 10:00 a.m.: \n\n\n\n\nhttps://www.umu.se/en/chemical-biological-centre/kbc_events/registration-form-infrastructure-seminar\n\n\n\n\nor follow online (registration is not required): \n\n\n\nMeeting URL: https://umu.zoom.us/j/67909354528Meeting ID: 679 0935 4528 \n\n\n\nOrganisers: SciLifeLab Site Umeå and Chemical Biological Centre (KBC)\, Umeå \n\n\n\nOrganizer:KBC \n\n\n\nEvent type:Seminar
URL:https://www.scilifelab.se/event/building-capacity-to-upskill-the-community-how-the-scilifelab-training-hub-can-help/
LOCATION:Glasburen Seminar Room\, Chemical Biological Centre (KBC) Building\, Umeå University\, Umeå\, 901 87\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2024/04/SciLifeLab-Site-Umea-seminar-scaled.jpg
ORGANIZER;CN="SciLifeLab Ume%C3%A5":MAILTO:umea@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20240425T113000
DTEND;TZID=Europe/Stockholm:20240426T170000
DTSTAMP:20260404T025940
CREATED:20231221T105648Z
LAST-MODIFIED:20240425T193524Z
UID:10001075-1714044600-1714150800@www.scilifelab.se
SUMMARY:Cell and Molecular Biology - DDLS symposium
DESCRIPTION:Welcome to the Cell and Molecular Biology Symposium\, starting with lunch at Restaurant Lyktan from 11:30. The conference then takes place in the Birgit Thilander Lecture Hall in Academicum. The program includes presentations from local and national experts within data driven life science research – and a keynote lecture by Prof. Edda Klipp from the Humboldt University in Berlin. \n\n\n\nDay two\, on April 26\, takes place in the AstraZeneca facilities in Mölndal. Here we will meet with the exciting BioVenture Hub and learn about how AstraZeneca works with data driven life science in a clinical setting. Bus transfer from Clarion Hotel Post leaves at 07:30 directly to Astra Zeneca. \n\n\n\n\nPractical information\n\n\n\n\n\nPublic Transport to Medicinareberget \n\n\n\nThursday\, April 27 \n\n\n\nPlease note that due to construction work\, there are disturbances in the tram operations at nearby stops Medicinaregatan and Sahlgrenska Huvudentrén. \n\n\n\nFind your best route through the Västtrafik website or app. \n\n\n\n\n\nCoach to Astra Zeneca \n\n\n\nFriday\, April 26 \n\n\n\nA chartered bus will depart from Clarion Post Hotel at 07:30\, directly to the Astra Zeneca Conference Center (PGN Entrance).  \n\n\n\n\n\nGuidelines for Self-Transport Arrivals to Astra Zeneca \n\n\n\nFriday\, April 26 \n\n\n\nWhether you’re arriving by public transport\, bike\, or car\, kindly make your way to the KC-entrance at Pepparedsleden 1. \n\n\n\nPlease be punctual at 08:00\, as you’ll be guided from the entrance to the conference area. \n\n\n\n\n\n\nProgram\n\n\n\nClick to expand and see the program \n\n\n\nThursday\, April 25\nApril 2510:30Expert Group meeting11:30LunchRestaurant Lyktan13:00Welcome WordsMargit Mahlapuu\, University of GothenburgSverker Holmgren\, ChalmersOla Engkvist\, AstraZeneca13:10Precision Glycomics: How AI and advanced mass spectrometry are changing the gameDaniel Bojar\, University of Gothenburg13:40Towards a universal molecular framework for structure prediction and designPatrick Bryant\, SciLifeLab/Stockholm University (DDLS Fellow)Protein-ligand docking is an established tool in drug discovery and development to narrow down potential therapeutics for experimental testing. However\, a high-quality protein structure is required and often the protein is treated as fully or partially rigid. Here we develop an AI system that can predict the fully flexible all-atom structure of protein-ligand complexes directly\, given a multiple sequence alignment representation of the protein\, protein pocket information\, and a SMILES string representing the ligand.14:10Integrating single-cell transcriptomics with cellular phenotypesJoan Camuñas\, University of Gothenburg14:40Thermodynamics-informed modeling of biochemical reaction and regulation networksEdda Klipp\, Humboldt-Universität zu Berlin15:20Coffee Break15:50Tumor biology using multiomicsAnders Ståhlberg\, University of Gothenburg16:10Multiomics – state of art data generation and analysis at NGIMattias Ormestad and Franziska Bonath\, National Genomics InfrastructureMultiomics projects can span over long time frames\, sometimes years\, until all data is created. Often sequencing is an integral part and is outsourced to a core facility like NGI. For projects in which data generation is performed by different groups\, it is crucial that important information about library preparation\, sequencing and analysis is recorded and available to all other participants. Therefore\, NGI applies quality control measures and reports important metadata to ensure that our users can use our data with confidence even years after data generation.16:30Data-Driven Microscopy: the automation of end-to-end imaging workflowsElisabet Carlsohn and Rafael Camacho\, SciLifeLab/University of GothenburgBiological complexity mandates comprehensive imaging for statistically significant results. Manual operation impedes large dataset acquisition\, affecting reproducibility. Smart microscopy\, integrating image analysis and computer-controlled microscopes\, streamlines workflows. At GU’s Centre for Cellular Imaging\, we offer open-access “smart microscopy” services optimizing data management with next-gen file formats\, ome-zarr\, community-driven visualization tools\, napari\, and collaborative platforms\, webknossos. This ensures efficient resource utilization in the era of data-driven life sciences.17:00Tour to SciLifeLab units in Gothenburg Optional\, sign up in registration form18:00Dinner for CMB fellows and experts\, and speakers\n\n\n\n \n\n\n\n\nFriday\, April 26\nApril 2607:30Bus transport to Astra Zeneca Conference Centre in Mölndal08:00Visitor registration Astra Zeneca Conference Centre in Mölndal08:25IntroductionOla Engkvist\, AstraZeneca & Margit Mahlapuu\, University of Gothenburg08:30Empowering data-driven innovations in Life Sciences: A journey with GU VenturesKlementina Österberg\, GU Ventures & Carl-Peter Mattsson\, GU VenturesKlementina Österberg CEO & Carl-Peter Mattsson Investment director at GU Ventures will present their experiences and the journeys to create successful new business in collaborations with investors\, industry and the eco system. They will also show some examples of these journeys with their companies.09:15BioVentureHub – an antidote to the incubent’s curseMagnus Björsne\, AstraZeneca BioVentureHub10:00Coffee Break10:30Precision Medicine from the start – using omic data to deliver actionable insight to drug discovery and developmentDaniel Muthas\, AstraZeneca11:15Data driven life sciences in a clinical settingJesper Havsol\, AstraZeneca12:00Networking lunch12:40Tour –  “The Amazing Journey the story about Astra Zeneca in Mölndal”Optional\, sign up in registration form\n\n\n\n \n\n\n\n\nSymposium Program for Download and PrintDownload\n\n\n\nData-driven Life Science\n\n\n\nThe future of life science is data-driven\, providing major new opportunities to explore and understand biology\, human health and changing ecosystems. The SciLifeLab & Wallenberg National Program for Data-Driven Life Science (DDLS) is set up to make use of these opportunities.
URL:https://www.scilifelab.se/event/ddls-symposium-cell-and-molecular-biology/
LOCATION:Birgit Thilander Lecture Hall\, Medicinaregatan 3\, Göteborg
CATEGORIES:Event
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20240425T120000
DTEND;TZID=Europe/Stockholm:20240425T130000
DTSTAMP:20260404T025940
CREATED:20240102T095727Z
LAST-MODIFIED:20240404T113609Z
UID:10001091-1714046400-1714050000@www.scilifelab.se
SUMMARY:Campus Solna Seminar Series: Szabolcz Hetey & Morteza Aslanzadeh
DESCRIPTION:Welcome to join the Campus Solna Seminar Series – an  initiative to promote the fantastic science ongoing at Campus Solna and hopefully forge more internal communication and collaboration between within Campus Solna. The format consists of two 15 min talks (One speaker from the Alpha-building and one from the Gamma-building respectively)\, with an additional 5 min of questions. Presentation of ongoing (unpublished) projects is strongly encouraged. \n\n\n\nThe seminars are held Thursdays 12:00-13:00. You can bring your lunch to the seminar. \n\n\n\nThis week:\n\n\n\n\n\n\nSzabolcz Hetey\n\n\n\nSimon Elsässer – alpha 4 \n\n\n\nDissecting the regulatory hierarchies of the PRC2 shielding mechanism in human pluripotent stem cells \n\n\n\n\n\nMorteza Aslanzadeh\n\n\n\nMarc Friedländer – gamma 5 \n\n\n\nMalat1 affects transcription and splicing through distinct pathways in mouse embryonic stem cells \n\n\n\n\n\n\nThis seminar series is organized by the PhD & Postdoc Council. For more information about the Council and other events check our page.
URL:https://www.scilifelab.se/event/campus-solna-seminar-series-szabolcz-hetey-morteza-aslanzadeh/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Community
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2022/09/IMG_20221103_124630107_HDR-scaled.jpg
ORGANIZER;CN="SciLifeLab Solna PhD & Postdoc Council":MAILTO:phd-council@scilifelab.se
END:VEVENT
END:VCALENDAR