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X-WR-CALDESC:Events for SciLifeLab
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DTSTART;TZID=Europe/Stockholm:20240408T130000
DTEND;TZID=Europe/Stockholm:20240409T153000
DTSTAMP:20260501T231858
CREATED:20240402T125022Z
LAST-MODIFIED:20240402T153433Z
UID:10001224-1712581200-1712676600@www.scilifelab.se
SUMMARY:Data Driven Life Science Seminars: "Data driven research in evolution and biodiversity"
DESCRIPTION:Data Driven Life Science Seminars. On the topic of “Data driven research in evolution and biodiversity “. \n\n\n\nWelcome to attend the open\, digital seminars as part of the recruitment process given by the top candidates for the group leader position in data driven life science (DDLS). \n\n\n\nLink to join the webinar\, password: 526883 \n\n\n\nRead more on the event website \n\n\n\nApril 8th\n\n\n\n13.00-14.00: Malin Olofsson\, Swedish University of Agricultural Sciences\, SLU. Combining multiple data to enhance understanding of phytoplankton evolution and biodiversity \n\n\n\n14.30-15.30: Mariana Pires Braga\, Swedish University of Agricultural Sciences\, SLU. Biotic interactions: teasing apart evolutionary processes from data biases \n\n\n\nApril 9th\n\n\n\n13.00-14.00: Harith Farooq\, University of Copenhagen\, Denmark. Biodiversity Data to guide Macroecology and Conservation \n\n\n\n14.30-15.30: Pooja Choksi\, University of Minnesota\, USA. tbd
URL:https://www.scilifelab.se/event/data-driven-life-science-seminars-data-driven-research-in-evolution-and-biodiversity/
LOCATION:Loftets bankettsal\, Ultuna\, Duhrevägen 8\, Uppsala
CATEGORIES:Event
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BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20240418T100000
DTEND;TZID=Europe/Stockholm:20240418T110000
DTSTAMP:20260501T231858
CREATED:20240328T075011Z
LAST-MODIFIED:20240404T101946Z
UID:10001214-1713434400-1713438000@www.scilifelab.se
SUMMARY:Leveraging supercomputers for data-driven life science research: examples from Berzelius
DESCRIPTION:This event is part of the Tools for AI/ML research in life sciences event series arranged by the SciLifeLab Data Centre. This webinar is organized in collaboration with the National Supercomputer Centre\, LiU as well as the EuroHPC National Competence Centre Sweden (ENCCS). \n\n\n\nTitle: Leveraging supercomputers for data-driven life science research: examples of use cases and introduction to Berzelius \n\n\n\nSpeaker: Soumi Chaki and Xuan Gu (National Supercomputer Centre\, Linköping University)\, Kimmo Kartasalo (Karolinska Institute)\, Claudio Mirabello (Linköping University). \n\n\n\nWhere and when: April 18\, 2024 at 10:00-11:00 Stockholm time\, online. Registration is open till April 18 at 9:00.  \n\n\n\nAbstract:  \n\n\n\nAgenda:10:00-10:05 – Introduction to supercomputers and Berzelius10:05-10:20 – Developing computational pathology AI models for improved prostate cancer diagnostics and prognostics using Berzelius (Kimmo Kartasalo\, Post-doctoral researcher\, Karolinska Institute)10:20-10:35 – Modelling large protein complexes on Berzelius (Claudio Mirabello\, Principal Research Engineer\, Docent\, Linköping University)10:35-10:50 – Resource allocation procedure and user support available on Berzelius10:50-11:00 – Q&A session \n\n\n\nPowerful GPU supercomputers allow to carry out large-scale experiments in a fraction of time that it would otherwise take as well as pursue research projects that would otherwise not be possible. Life science researchers at Swedish universities can apply and make use of the Berzelius AI/ML cluster at the National Supercomputer Center in Linköping. In this one hour long webinar two researchers will present how they use Berzelius in their work and what research it allows them to carry out. In addition\, we will present the technical specifications of Berzelius\, the resource allocation procedure\, as well as the available user support. We will give a short demonstration on how to request GPU resources on Berzelius and run scripts/software on the allocated GPU(s). This webinar is particularly tailored for researchers interested in and working with AI/ML methods. \n\n\n\nRegister to join the event\n\n\n\nMore about the event series: \n\n\n\nTools for AI/ML research in life sciences is an event series by the SciLifeLab Data Centre aimed at life science researchers who use machine learning methods in their work. The goal of the events in this series is to provide introductions to different tools for ML research but also to foster discussions around our practices and how they can be improved. The events takes place virtually (over Zoom) and are open to researchers in Sweden and beyond. Each event is scheduled for 60 minutes\, consisting of a talk and an extended discussion. Follow the page of the event series to learn about future seminars. \n\n\n\nFor questions about the events please contact the organizing team by emailing  serve@scilifelab.se  \n\n\n\n \n\n\n\nScientific lead: Prof. Ola Spjuth\, SciLifeLab Data Centre and Uppsala University and DDLS \n\n\n\nContact information: serve@scilifelab.se
URL:https://www.scilifelab.se/event/leveraging-supercomputers/
LOCATION:Online event via Zoom
CATEGORIES:Event
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DTSTART;TZID=Europe/Stockholm:20240419T100000
DTEND;TZID=Europe/Stockholm:20240419T110000
DTSTAMP:20260501T231858
CREATED:20240115T121853Z
LAST-MODIFIED:20240115T121929Z
UID:10001109-1713520800-1713524400@www.scilifelab.se
SUMMARY:Model-guided ML approaches to integrative omics analyses
DESCRIPTION:NBIS\, Scilifelab’s Bioinformatics platform\, arranges an open AI and IO Seminar Series aimed at knowledge-sharing about Artificial Intelligence and Integrative Omics (AI & IO) analysis and applications in the Life Science community. The seminar series is open to everyone. The seminar is run over Zoom on the third Friday of the month during academic terms\, typically between 10 and 11 am\, with ca. 45 min long presentation and 15 min discussion. \n\n\n\nFor further info\, please see this website. \n\n\n\n \n\n\n\n\n\n\n\nModel-guided ML approaches to integrative omics analyses\n\n\n\nCemal Erdem\, DDLS fellow\, Umeå University \n\n\n\nClick here to join zoom conference
URL:https://www.scilifelab.se/event/model-guided-ml-approaches-to-integrative-omics-analyses/
LOCATION:Online event via Zoom
CATEGORIES:Event
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BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20240425T113000
DTEND;TZID=Europe/Stockholm:20240426T170000
DTSTAMP:20260501T231858
CREATED:20231221T105648Z
LAST-MODIFIED:20240425T193524Z
UID:10001075-1714044600-1714150800@www.scilifelab.se
SUMMARY:Cell and Molecular Biology - DDLS symposium
DESCRIPTION:Welcome to the Cell and Molecular Biology Symposium\, starting with lunch at Restaurant Lyktan from 11:30. The conference then takes place in the Birgit Thilander Lecture Hall in Academicum. The program includes presentations from local and national experts within data driven life science research – and a keynote lecture by Prof. Edda Klipp from the Humboldt University in Berlin. \n\n\n\nDay two\, on April 26\, takes place in the AstraZeneca facilities in Mölndal. Here we will meet with the exciting BioVenture Hub and learn about how AstraZeneca works with data driven life science in a clinical setting. Bus transfer from Clarion Hotel Post leaves at 07:30 directly to Astra Zeneca. \n\n\n\n\nPractical information\n\n\n\n\n\nPublic Transport to Medicinareberget \n\n\n\nThursday\, April 27 \n\n\n\nPlease note that due to construction work\, there are disturbances in the tram operations at nearby stops Medicinaregatan and Sahlgrenska Huvudentrén. \n\n\n\nFind your best route through the Västtrafik website or app. \n\n\n\n\n\nCoach to Astra Zeneca \n\n\n\nFriday\, April 26 \n\n\n\nA chartered bus will depart from Clarion Post Hotel at 07:30\, directly to the Astra Zeneca Conference Center (PGN Entrance).  \n\n\n\n\n\nGuidelines for Self-Transport Arrivals to Astra Zeneca \n\n\n\nFriday\, April 26 \n\n\n\nWhether you’re arriving by public transport\, bike\, or car\, kindly make your way to the KC-entrance at Pepparedsleden 1. \n\n\n\nPlease be punctual at 08:00\, as you’ll be guided from the entrance to the conference area. \n\n\n\n\n\n\nProgram\n\n\n\nClick to expand and see the program \n\n\n\nThursday\, April 25\nApril 2510:30Expert Group meeting11:30LunchRestaurant Lyktan13:00Welcome WordsMargit Mahlapuu\, University of GothenburgSverker Holmgren\, ChalmersOla Engkvist\, AstraZeneca13:10Precision Glycomics: How AI and advanced mass spectrometry are changing the gameDaniel Bojar\, University of Gothenburg13:40Towards a universal molecular framework for structure prediction and designPatrick Bryant\, SciLifeLab/Stockholm University (DDLS Fellow)Protein-ligand docking is an established tool in drug discovery and development to narrow down potential therapeutics for experimental testing. However\, a high-quality protein structure is required and often the protein is treated as fully or partially rigid. Here we develop an AI system that can predict the fully flexible all-atom structure of protein-ligand complexes directly\, given a multiple sequence alignment representation of the protein\, protein pocket information\, and a SMILES string representing the ligand.14:10Integrating single-cell transcriptomics with cellular phenotypesJoan Camuñas\, University of Gothenburg14:40Thermodynamics-informed modeling of biochemical reaction and regulation networksEdda Klipp\, Humboldt-Universität zu Berlin15:20Coffee Break15:50Tumor biology using multiomicsAnders Ståhlberg\, University of Gothenburg16:10Multiomics – state of art data generation and analysis at NGIMattias Ormestad and Franziska Bonath\, National Genomics InfrastructureMultiomics projects can span over long time frames\, sometimes years\, until all data is created. Often sequencing is an integral part and is outsourced to a core facility like NGI. For projects in which data generation is performed by different groups\, it is crucial that important information about library preparation\, sequencing and analysis is recorded and available to all other participants. Therefore\, NGI applies quality control measures and reports important metadata to ensure that our users can use our data with confidence even years after data generation.16:30Data-Driven Microscopy: the automation of end-to-end imaging workflowsElisabet Carlsohn and Rafael Camacho\, SciLifeLab/University of GothenburgBiological complexity mandates comprehensive imaging for statistically significant results. Manual operation impedes large dataset acquisition\, affecting reproducibility. Smart microscopy\, integrating image analysis and computer-controlled microscopes\, streamlines workflows. At GU’s Centre for Cellular Imaging\, we offer open-access “smart microscopy” services optimizing data management with next-gen file formats\, ome-zarr\, community-driven visualization tools\, napari\, and collaborative platforms\, webknossos. This ensures efficient resource utilization in the era of data-driven life sciences.17:00Tour to SciLifeLab units in Gothenburg Optional\, sign up in registration form18:00Dinner for CMB fellows and experts\, and speakers\n\n\n\n \n\n\n\n\nFriday\, April 26\nApril 2607:30Bus transport to Astra Zeneca Conference Centre in Mölndal08:00Visitor registration Astra Zeneca Conference Centre in Mölndal08:25IntroductionOla Engkvist\, AstraZeneca & Margit Mahlapuu\, University of Gothenburg08:30Empowering data-driven innovations in Life Sciences: A journey with GU VenturesKlementina Österberg\, GU Ventures & Carl-Peter Mattsson\, GU VenturesKlementina Österberg CEO & Carl-Peter Mattsson Investment director at GU Ventures will present their experiences and the journeys to create successful new business in collaborations with investors\, industry and the eco system. They will also show some examples of these journeys with their companies.09:15BioVentureHub – an antidote to the incubent’s curseMagnus Björsne\, AstraZeneca BioVentureHub10:00Coffee Break10:30Precision Medicine from the start – using omic data to deliver actionable insight to drug discovery and developmentDaniel Muthas\, AstraZeneca11:15Data driven life sciences in a clinical settingJesper Havsol\, AstraZeneca12:00Networking lunch12:40Tour –  “The Amazing Journey the story about Astra Zeneca in Mölndal”Optional\, sign up in registration form\n\n\n\n \n\n\n\n\nSymposium Program for Download and PrintDownload\n\n\n\nData-driven Life Science\n\n\n\nThe future of life science is data-driven\, providing major new opportunities to explore and understand biology\, human health and changing ecosystems. The SciLifeLab & Wallenberg National Program for Data-Driven Life Science (DDLS) is set up to make use of these opportunities.
URL:https://www.scilifelab.se/event/ddls-symposium-cell-and-molecular-biology/
LOCATION:Birgit Thilander Lecture Hall\, Medicinaregatan 3\, Göteborg
CATEGORIES:Event
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