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SciLifeLab Workshop on Cell Profile

Workshop on Quantitative Automated Analysis of Phenotypes from Microscopic Images using Cell Profiler

June 14, 2012 Rudbeck Lab Room: Jan Waldenström

Free, open-source software
, user friendly, tailored for biologists
. Available for download from Also installed on the UPPMAX computing cluster for large scale experiments.


9.00-12.00  Applied lectures

Get started with Cell Profiler

Identify relevant objects (e.g. cells)

Morphological measurements

Use machine learning to classify cells based on the measured features

13.00-16.00 Personalized assistance with your own data

Bring your computer with CellProfiler and CellProfiler Analyst installed to actively participate to the workshop.


Carolina Wählby, Alexandra Pacureanu, Martin Simonsson

Registration & questions

Download (win, mac & linux)