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DTSTART;TZID=Europe/Stockholm:20260908T110000
DTEND;TZID=Europe/Stockholm:20260908T120000
DTSTAMP:20260528T115241Z
CREATED:20260528T114149Z
LAST-MODIFIED:20260528T115241Z
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SUMMARY:From Messy Data to Clean Datasets: A Practical Introduction to OpenRefine
DESCRIPTION:Messy and inconsistent data is a common challenge in research\, often making it difficult to analyse\, share\, and reuse data effectively. Improving data quality is therefore a key step towards more reproducible research and better alignment with Open Science and FAIR principles. \n\n\n\nIn this session\, we will introduce OpenRefine\, an open-source tool designed to help researchers explore\, clean\, and transform messy tabular data. OpenRefine is particularly useful for working with spreadsheets and datasets containing inconsistencies such as duplicate entries\, varying formats\, or typographical errors. \n\n\n\nWe will begin with a short introduction to the types of data challenges OpenRefine can address\, followed by a live demonstration showing how to work with real data. The demo will highlight key features and how these can be used to efficiently identify and resolve inconsistencies in datasets. \n\n\n\nThe session will conclude with an open Q&A\, providing an opportunity to ask questions and discuss how these approaches can be applied in your own research context. \n\n\n\nNo prior experience with OpenRefine is required.  \n\n\n\nElisavet Torstensson\, SciLifeLab\, Data Steward NBIS- FEGA Sweden Helpdesk Team- Elixir Sweden \n\n\n\nMore information\nThis event is part of the SciLifeLab Open Science seminar series\, an event series by the SciLifeLab Data Centre and NBIS joint Data Management team.The goal of the events in this seminar series is to provide interesting interactive seminars around topics related to Research Data Management and Open Science in general\, and to foster discussions around best practices. \n\n\n\nResearch Data Management (RDM) concerns the organization\, storage\, preservation\, and sharing of data that is collected and analyzed during a research project. Proper planning and management of research data will make project management easier and more efficient while projects are being performed. It also facilitates sharing and allows others to validate as well as reuse the data.Open Science is a set of principles and practices that aim to make scientific research from all fields accessible to everyone for the benefits of scientists and society as a whole. Open science is about making sure not only that scientific knowledge is accessible but also that the production of that knowledge itself is inclusive\, equitable and sustainable. \n\n\n\nThe events are open to everyone working at or affiliated with a Swedish research institute or university. We welcome all researchers\, educational professionals\, staff\, RDM professionals\, and others with an interest in life sciences\, from all university levels. The events are informal and inclusive\, so feel welcome to join and participate in our interesting discussions! \n\n\n\nThe events will be recorded and published openly after the seminars on the SciLifeLab YouTube channel. The slides will be made available at our SciLifeLab Data Repository.More information about SciLifeLab Data Centre and NBIS joint Open Science seminar series: https://www.scilifelab.se/data/scilifelab-data-management-seminar-series/ \n\n\n\nIf you have suggestions for topics or presentations\, please contact us at data-management@scilifelab.seFor more information or inquiries\, please contact us at  data-management@scilifelab.se
URL:https://www.scilifelab.se/event/openscience-openrefine/
CATEGORIES:Event
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ORGANIZER;CN="Open Science Seminar Series":MAILTO:data-management@scilifelab.se
LOCATION:https://uu-se.zoom.us/j/66405928096
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20260921T100000
DTEND;TZID=Europe/Stockholm:20260921T170000
DTSTAMP:20260701T063052Z
CREATED:20260511T122837Z
LAST-MODIFIED:20260701T063052Z
UID:10001817-1789984800-1790010000@www.scilifelab.se
SUMMARY:Research Data Management in Life Science - Linköping
DESCRIPTION:Location: Rönnen – Campus University Hospital – Linköping University. On-site event arranged by SciLifeLab Linköping \n\n\n\n\nRegister here\n\n\n\n\nNote: It is important to bring a laptop to actively participate in the workshops.  \n\n\n\nDiscover how to effectively manage\, share\, and safeguard your research data through practical guidance from both local and national experts. Engage in discussions on best practices grounded in the FAIR principles and Open Science. \n\n\n\nSciLifeLab Data Centre\, National Bioinformatics Infrastructure Sweden (NBIS) and the LiU legal office welcome all life-science researchers and infrastructure experts in Linköping to join this event where we explore support for research data handling\, GDPR and data management practices according to Findable\, Accessible\, Interoperable and Reusable (FAIR) principles and Open Science.  \n\n\n\nWe specifically invite SciLifeLab Group leaders\, Fellows and WCMM Fellows\, and all PhD´s and PostDocs in their research groups to join this interactive event. \n\n\n\nThis event is informal and inclusive\, so feel welcome to join and participate in our interesting discussions! \n\n\n\nPROGRAM\n\n\n\nNote: It is important to bring a laptop to actively participate in the workshops.  \n\n\n\n10.00-10.15: Welcome coffee/tea\nEveryone is welcome for the coffee/tea. You can just walk in between 10.00-10.15. \n\n\n\n\n10.15-10.30: Introduction\nIntroduction of the program.   \n\n\n\n\n10:30-12:00: Writing a strong Data Management Plan (DMP) – Improving the lifecycle of your research data\nManaging research data involves a complex web of decisions. How do you ensure nothing falls through the cracks and that your data remains FAIR? The answer is a Data Management Plan (DMP). \n\n\n\nThis hands-on workshop emphasises data management planning at all project phases to keep your data secure and organised. Participants will gain direct access to the Data Stewardship Wizard (DSW) tool to begin drafting a customised DMP tailored to life science research projects. \n\n\n\nRelated content \n\n\n\n \n\n\n\n\n12.00-13.00: Lunch break\nLunch is not included in this event. At Linköping University and the surrounding campus you will find several options for lunch.  \n\n\n\n\n13.00-14.30: Handling personal data in Life Science – Navigating GDPR and Swedish legislation\nAre you confident in how your research project documents and processes personal data? This seminar guides you through the legal landscape\, from the GDPR to specific Swedish national laws. Using a practical research scenario\, we will clarify essential roles and terms\, including: \n\n\n\n\nResearch principal (forskningshuvudman): Understanding the role and responsibilities of the organisation hosting the research.\n\n\n\nData controllers vs. processors: Identifying who is responsible for each stage of data processing.\n\n\n\nSensitive data: Best practices for securely sharing biomedical research data in FEGA Sweden while remaining compliant.\n\n\n\n\n\n14.30-15.15: Marketplace: an interactive exhibition – including fika\nVisit the Interactive Marketplace to explore local and national research data management services in an engaging and informal setting. Meet experts\, discover practical support and tools\, join interactive discussions\, and learn how different services can support your research — all through inspiring stands\, conversation-focused posters\, and hands-on activities like the Data Management Ferris Wheel.Interested in contributing to the Marketplace and showcasing your data management support services? Please contact josefine.sandstrom@liu.se. \n\n\n\n\n15.15-17.00: Open source software for research – Sharing code the right way\nResearch depends on software\, but without open and FAIR practices\, software can be difficult to understand\, reproduce\, and reuse. Open-source software means code that is not only available\, but also licensed for free use\, modification\, and sharing. This workshop provides an overview of open science and FAIR software practices\, and introduces a practical checklist for open and FAIR research software. Participants will apply these principles in a hands-on tutorial to improve the openness\, transparency\, and reusability of their research code. \n\n\n\n\n17.00: End of the event\nThe event will end at 17.00. Thank you all for participating.  \n\n\n\n\n \n\n\n\nMore information on Research Data Management and Open Science\n\n\n\nResearch Data Management (RDM) concerns the organization\, storage\, preservation\, and sharing of data that is collected and analyzed during a research project. Proper planning and management of research data will make project management easier and more efficient while projects are being performed. It also facilitates sharing and allows others to validate as well as reuse the data. \n\n\n\nOpen Science is a set of principles and practices that aim to make scientific research from all fields accessible to everyone for the benefits of scientists and society as a whole. Open science is about making sure not only that scientific knowledge is accessible but also that the production of that knowledge itself is inclusive\, equitable and sustainable. \n\n\n\nContact information: NBIS\, SciLifeLab Data Centre – Data Management\, and SciLifeLab Linköping. For questions\, please contact josefine.sandstrom@liu.se
URL:https://www.scilifelab.se/event/research-data-management-day-in-linkoping/
CATEGORIES:Event
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DTSTART;TZID=Europe/Stockholm:20261012T120000
DTEND;TZID=Europe/Stockholm:20261014T120000
DTSTAMP:20260507T093008Z
CREATED:20260414T090237Z
LAST-MODIFIED:20260507T093008Z
UID:10001802-1791806400-1791979200@www.scilifelab.se
SUMMARY:WASP-HS & DDLS: Interdisciplinary Workshop
DESCRIPTION:WASP-HS & DDLS: Joint Workshop at Sigtunastiftelsen\, 12–14 October \n\n\n\nThis interdisciplinary workshop brings together a carefully selected group of 25 researchers from diverse fields to exchange perspectives on the ethical\, legal\, and social dimensions of data-intensive research in the life sciences. The conversation is not limited to lawyers and ethicists\, but also includes researchers whose work both shapes and is shaped by these governance frameworks.  \n\n\n\nThe aim is to bring together diverse expertise to explore key challenges\, frame shared research questions\, and spark new interdisciplinary collaborations. \n\n\n\nWorkshop Focus\n\n\n\n→ Analyze governance structures and how they shape data-intensive research in precision medicine\, epidemiology\, infection biology\, biodiversity\, and molecular life sciences→ Identify key legal\, regulatory\, and ethical challenges in data-driven life sciences\, with particular attention to the experiences of scientists working with these issues in practice→ Promote meaningful dialogue across disciplines→ Develop new interdisciplinary research initiatives \n\n\n\nDuration\n\n\n\n12 OctoberArrival and opening from lunch onwards \n\n\n\n13 OctoberFull day of sessions \n\n\n\n14 OctoberClosing and departure ending with lunch  \n\n\n\nExpression of Interest\n\n\n\nApply by May 14 to secure your spot. This workshop is open to researchers from both the WASP-HS and DDLS communities. Spots are limited to 25 participants\, so make sure to fill in the Expression of Interest form to get a chance to attend. \n\n\n\nApply here \n\n\n\nOrganizers\n\n\n\nLianne Colonna\,WASP-HS\, Stockholm UniversityYana Litins’ka\, WASP-HS\, Lund UniversityHeidi Howard\, DDLS\, Chalmers University of TechnologyFrancis Lee\, WASP-HS\, Södertörn UniversityUlrika Wallenquist\, DDLS\, Uppsala UniversityBodil Formark\,WASP-HS\, Södertörn University
URL:https://www.scilifelab.se/event/wasp-hs-ddls-interdisciplinary-workshop/
LOCATION:Sigtunastiftelsen\, Manfred Björkquists allé 4\, Sigtuna\, 193 31\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2025/11/DDLS.jpg
ORGANIZER;CN="Data-Driven Life Science @ SciLifeLab":MAILTO:ddls@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20261103T100000
DTEND;TZID=Europe/Stockholm:20261103T170000
DTSTAMP:20260622T093936Z
CREATED:20260618T112246Z
LAST-MODIFIED:20260622T093936Z
UID:10001844-1793700000-1793725200@www.scilifelab.se
SUMMARY:Research Data Management in Life Science - Gothenburg
DESCRIPTION:Location: Birgit Thilander\, Academicum\, Medicinaregatan 3\, Gothenburg. On-site event co-arranged by SciLifeLab Gothenburg\, Data Centre and NBIS. \n\n\n\nRegister here\n\n\n\nRegistration deadline: Tuesday\, October 27\, 2026 \n\n\n\nDiscover how to effectively manage\, share\, and safeguard your research data through practical guidance from both local and national experts. Engage in discussions on best practices grounded in the FAIR principles and Open Science. \n\n\n\nSciLifeLab Data Centre\, National Bioinformatics Infrastructure Sweden (NBIS) and SciLifeLab Gothenburg welcome all life-science researchers and infrastructure experts in the Gothenburg area to join this event where we explore support for research data handling\, GDPR and data management practices according to Findable\, Accessible\, Interoperable and Reusable (FAIR) principles and Open Science. \n\n\n\nThis event is informal and inclusive\, so feel welcome to join and participate in our interesting discussions! \n\n\n\nPROGRAM\n\n\n\n10.00-10.15: Welcome coffee/tea \n\n\n\n10.15-10.30: Introduction \n\n\n\n10:30-12:00: Writing a strong Data Management Plan (DMP) – Improving the lifecycle of your research data in an AI-aware research landscape\nManaging research data involves a complex web of decisions. How do you ensure that nothing falls through the cracks\, that your data remains secure and organised\, and that your project supports FAIR data principles from start to finish? A strong Data Management Plan (DMP) helps researchers think through these questions before problems arise. \n\n\n\nThis hands-on workshop emphasises data management planning across all phases of a research project\, from data collection and documentation to storage\, sharing\, preservation\, and reuse. Participants will gain direct access to the Data Stewardship Wizard (DSW) tool and begin drafting a customised DMP tailored to life science research projects. \n\n\n\nNew for this year\, the workshop will also briefly address the growing role of AI tools in DMP writing. Many researchers can now ask an AI system to generate a DMP in seconds\, but a well-written text is not the same as a well-considered plan. We will discuss how AI can support drafting\, reflection\, and quality control\, while also highlighting the risks of generic\, incomplete\, or misleading answers. The focus will remain on helping researchers understand the decisions behind their DMPs and use available tools responsibly. \n\n\n\n \n\n\n\n \n\n\n\n\n12.00-13.00: Lunch \n\n\n\n13.00-14.30: Handling personal data in Life Science – Navigating GDPR\, Swedish legislation\, and responsible AI use in research\nAre you confident in how your research project documents\, processes\, and protects personal data? Life science research often involves complex data flows\, multiple actors\, and sensitive information\, making it essential to understand both the legal requirements and the practical responsibilities involved. \n\n\n\nThis seminar guides participants through the legal landscape\, from the GDPR to relevant Swedish national legislation. Using a practical research scenario\, we will clarify essential roles and concepts\, including: \n\n\n\n\nResearch principal (forskningshuvudman): Understanding the role and responsibilities of the organisation hosting the research.\n\n\n\nData controllers vs. processors: Identifying who is responsible for each stage of data processing\, including storage\, analysis\, sharing\, and long-term management.\n\n\n\nSensitive data: Understanding how biomedical research data should be handled\, protected\, and shared securely\, including practical considerations for services such as FEGA Sweden.\n\n\n\n\nNew for this year\, the seminar will also briefly address how GDPR affects the use of AI tools such as ChatGPT in research. Generative AI can support tasks such as drafting\, summarising\, coding\, documentation\, and project planning\, but it can also introduce risks when personal data\, sensitive data\, unpublished research material\, or confidential project information are entered into external tools. \n\n\n\nWe will discuss why AI use is not only a technical question\, but also a legal and organisational one: Who is responsible for the processing? What data can be shared with an AI tool? What should never be entered? How do researchers balance the benefits of AI with confidentiality\, accountability\, and compliance? \n\n\n\nThe aim is to help researchers make informed decisions when handling personal data in life science research\, including in an increasingly AI-supported research environment. \n\n\n\n\n14.30-15.30: Marketplace: an interactive exhibition – including fika\nVisit the Interactive Marketplace to explore local and national research data management services in an engaging and informal setting. Meet experts\, discover practical support and tools\, join interactive discussions\, and learn how different services can support your research — all through inspiring stands\, conversation-focused posters\, and hands-on activities like the Data Management Ferris Wheel.Interested in contributing to the Marketplace and showcasing your data management support services? Please contact gothenburg@scilifelab.se. \n\n\n\n\n15.30-17.00: Open source software for research – Sharing code the right way\nResearch depends on software\, but without open and FAIR practices\, software can be difficult to understand\, reproduce\, and reuse. Open-source software means code that is not only available\, but also licensed for free use\, modification\, and sharing. This workshop provides an overview of open science and FAIR software practices\, and introduces a practical checklist for open and FAIR research software. Participants will apply these principles in a hands-on tutorial to improve the openness\, transparency\, and reusability of their research code. \n\n\n\n\n \n\n\n\nMore information on Research Data Management and Open Science\n\n\n\nResearch Data Management (RDM) concerns the organization\, storage\, preservation\, and sharing of data that is collected and analyzed during a research project. Proper planning and management of research data will make project management easier and more efficient while projects are being performed. It also facilitates sharing and allows others to validate as well as reuse the data. \n\n\n\nOpen Science is a set of principles and practices that aim to make scientific research from all fields accessible to everyone for the benefits of scientists and society as a whole. Open science is about making sure not only that scientific knowledge is accessible but also that the production of that knowledge itself is inclusive\, equitable and sustainable. \n\n\n\nContact information: NBIS\, SciLifeLab Data Centre – Data Management\, and SciLifeLab Gotehnburg. For questions\, please contact gothenburg@scilifelab.se
URL:https://www.scilifelab.se/event/research-data-management-in-life-science-gothenburg/
LOCATION:Birgit Thilander Lecture Hall\, Academicum\, Medicinaregatan 3\, Gothenburg
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2025/05/OpenScience-scaled.jpeg
ORGANIZER;CN="SciLifeLab Gothenburg":MAILTO:gothenburg@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20261109T113000
DTEND;TZID=Europe/Stockholm:20261110T123000
DTSTAMP:20260819T130121Z
CREATED:20260413T092109Z
LAST-MODIFIED:20260819T130121Z
UID:10001800-1794223800-1794313800@www.scilifelab.se
SUMMARY:DDLS Annual Conference 2026
DESCRIPTION:The Data-Driven Life Science (DDLS) program\, funded by the Knut and Alice Wallenberg Foundation (KAW)\, warmly welcomes you to the 5th DDLS Annual Conference\, taking place November 9-10\, 2026\, at Aula Magna\, Frescati Campus\, Stockholm. \n\n\n\nTarget Group: Anyone interested in data-driven life science is welcome to attend the Conference. You don´t need to be part of the SciLifeLab & Wallenberg National Program for Data-Driven Life Science\, even though the conference focuses on achievements and highlights program activities. \n\n\n\nThis two-day\, in-person event will highlight DDLS research and activities\, showcase new technologies and services available to researchers across Sweden\, and provide a forum for knowledge exchange and collaboration. Participants will have the opportunity to: \n\n\n\n\nShare and discuss research findings\n\n\n\nExplore ideas and insights across disciplines\n\n\n\nBuild networks for collaboration and career development\n\n\n\nGain perspectives beyond their own fields of expertise\n\n\n\n\nThe conference begins with a light network lunch and registration on November 9 (11:30–12:30) and concludes with a networking lunch on November 10 (12:30–13:30). \n\n\n\nKeynotes\n\n\n\n\n\nLindsay EdwardsDr Lindsay Edwards\, Chief Technology Officer and President of PlatformsRelation\n\n\n\n\n\nKaroline FustAssociate Professor and head of the Lab of Microbial Systems BiologyKU Leuven\n\n\n\n\n\nPreliminary program\n\n\n\nNovember 9 \n\n\n\n12:30WelcomeKeynote – Lindsey EdwardsPanel Discussion14:00Poster session I with Coffee15:00DDLS Fellows talksMeet the new DDLS FellowsPresentation of NAISS – Erik Lindahl16:30Poster session II with mingle17:30End of day\n\n\n\nNovember 10 \n\n\n\n09:00DDLS Fellows talks10:00Coffee break10:45Keynote – Karoline FaustPresentations of DDLS funded projectsConclusion12:40Lunch and networking\n\n\n\nAfter lunch\, SciLifeLab Data Centre will organize workshops. See seperate registration to register. \n\n\n\nKeynotes\n\n\n\nLindsey Edwards\nTitle: Three impactful problems in drug discovery that might be solvable with machine learning (and what we are doing about them at Relation).Bio: Lindsay is an internationally recognised leader at the interface of AI\, machine learning\, computational biology\, and drug discovery. Across both academia and industry\, he has consistently advanced the translation of science into medicine using computational sciences. In his academic career in Australia and at King’s College London\, he developed innovative computational approaches to human metabolism\, hypoxia\, and respiratory physiology. His teams pioneered methods for modelling metabolic and transcriptomic data\, applying these to diverse clinical contexts including respiratory disease\, diabetes\, hypertension\, Parkinson’s disease\, and critical illness. In industry\, Lindsay founded one of the first pharmaceutical data science divisions at GSK\, embedding machine learning and data science into every stage of the discovery pipeline. As CTO of Relation Therapeutics\, he has raised over $200M\, creating one of the most significant TechBio companies rooted in scientific translation (including forging a landmark platform multi billion dollar collaboration with GSK). His role on the Scientific Advisory Board of the Schmidt Centre at the Broad Institute of Harvard and MIT further reflects his international collaborative reach\, engaging with leading global scientists at the intersection of AI and life sciences. His publication record—over 40 papers in top biomedical journals (NEJM\, JAMA\, PNAS) and premier AI/ML venues (NeurIPS\, ICML\, ICLR)—is exceptionally rare\, demonstrating dual impact across medicine and computational science. He was recently elected a Fellow of the Academy of Medical Sciences. \n\n\n\n\nKaroline Fust\nTitle: Top-down and bottom-up exploration of alternative community types in the human gut microbiome.Bio: Karoline Faust is an Associate Professor at KU Leuven who heads the Lab of Microbial Systems Biology\, which focuses on investigating microbial community dynamics in silico and in vitro. In particular\, her team is studying interactions between human gut bacteria and the resulting dynamics with synthetic communities in controlled conditions. In addition\, the team develops new tools for the analysis of microbiome data\, specifically the analysis of microbial networks. The group’s work is thus situated at the intersection of bioinformatics\, systems biology\, and microbial ecology.Affiliation: Molecular Bacteriology Unit (Rega Institute)\, Department of Microbiology\, Immunology and Transplantation\, KU Leuven \n\n\n\n\nRegistration\n\n\n\nwill open at the end of August. \n\n\n\nDDLS Annual Poster Prize\n\n\n\nThe DDLS Poster Prize encourages PhD students and postdoctoral researchers to present high-quality work in data-driven life science. The award\, decided by a Scientific Committee jury\, includes a certificate and a travel grant of up to 5\,000 SEK. Conditions apply. If you present a poster\, please ensure you stay for the Poster Award Ceremony at 12:00 by the end of the Conference.
URL:https://www.scilifelab.se/event/ddls-annual-conference-2026/
LOCATION:Aula Magna\, Frescativägen 6\, Stockholm\, 114 18 Stockholm\, Sweden
CATEGORIES:Event
ATTACH;FMTTYPE=image/jpeg:https://www.scilifelab.se/wp-content/uploads/2026/03/DDLS-pressmeddelande-2026-03-25_bild-scaled.jpg
ORGANIZER;CN="SciLifeLab Event":MAILTO:events@scilifelab.se
END:VEVENT
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