Scientific publications, issue 1

Listing of the scientific publications connected to Synergy#1, that SciLifeLab has contributed to.

Åsa Torinsson

  • Östensson M, Montén C, Bacelis J, Gudjonsdottir A.H. Adamovic S, Ek J, Ascher H, Pollak E, Arnell H, Browaldh L, Agardh D, Wahlström J, Nilsson S, Torinsson-Naluai Å (2013) A Possible Mechanism behind Autoimmune Disorders Discovered By Genome-Wide Linkage and Association Analysis in Celiac Disease. PLoS One. 8(8):e70174. DOI:10.1371/journal.pone.0070174.

Mark Dopson

Project 1: Deep biosphere

  • Wu X, K Holmfeldt, V Hubalek, D Lundin, M Åström, S Bertilsson & M Dopson (2016) Microbial metagenomes from three aquifers in the Fennoscandian shield terrestrial deep biosphere reveal metabolic partitioning among populations. ISME J 10: 1192-1203.
  • Hubalek V, X Wu, A Eiler, M Buck, C Heim, M Dopson, S Bertilsson & D Ionescu (2016) Connectivity to the surface determines diversity patterns in subsurface aquifers of the Fennoscandian shield. ISME J 10: 2447-2458.


  • Lopez-Fernandez M, E Broman, X Wu, S Bertilsson & M Dopson (2017) Investigation of viable taxa in the deep terrestrial biosphere identifies fermentative candidate phyla and unclassified populations. Manuscript.
  • Wu X, K Pedersen, J Edlund, L Eriksson, M Åström, AF Andersson, S Bertilsson & M Dopson (2017) Potential for hydrogen-oxidizing chemolithoautotrophic and diazotrophic populations to initiate biofilm formation in oligotrophic, deep terrestrial subsurface waters. Manuscript.
  • Holmfeldt K, X Wu, I de Bruijn, E Nilsson, B Smári Bjarnason, D Lundin, A Andersson, S Bertilsson & M Dopson (2017) Viral metagenomes from three aquifers in the Fennoscandian shield terrestrial deep biosphere. Manuscript.

Project 2: Sediment


  • Broman E, J Sjöstedt, J Pinhassi & M Dopson (2017) Shifts in coastal sediment oxygenation cause pronounced changes in microbial community composition and associated metabolism. Manuscript
  • Broman E, L Lingni, J Fridlund, F Svensson, C Legrand & M Dopson (2017) Eutrophication induced early stage hypoxic ‘dead zones’ stimulate growth of archaea. Manuscript.

Project 3: Acidophiles

  • Christel S, J Fridlund, A Buetti-Dinh, EL Watkin & M Dopson (2016) RNA transcript sequencing reveals inorganic sulfur compound oxidation pathways in the acidophile Acidithiobacillus ferrivorans. FEMS Microbiol Letts 363. DOI: 10.1093/femsle/fnw057.
  • Buetti-Dinh A, R Friedman & M Dopson (2016) Transcriptomic analysis reveals how potassium ions affect Sulfolobus acidocaldarius pH homeostasis. Microbiology 162:1422-1434.
  • Christel S, J Fridlund, EL Watkin, & M Dopson (2016) Acidithiobacillus ferrivorans SS3 presents little RNA transcript response related to cold shock during growth at 8 °C. Extremophiles 20: 903–913.

Project 4: MFC

  • Ni G, S Christel, P Roman, ZL Wong, MFM Bijmans & M Dopson (2016) Electricity generation from inorganic sulfur compound containing mining wastewater by acidophilic microorganisms. Res Microbiol 167: 568-575.

Helge Rask-Andersen

  • Liu W, Edin F, Blom H, Magnusson P, Schrott-Fischer A, Glueckert R, Santi PA, Li H, Laurell G, Rask-Andersen H (2016) Super-resolution structured illumination fluorescence microscopy of the lateral wall of the cochlea: the Connexin26/30 proteins are separately expressed in man. Cell Tissue Res. 2016 Jul;365(1):13-27. DOI 10.1007/s00441-016-2359-0

Manuscript: Two other manuscript are underway

Björn Lindahl

  • Julia Kyaschenko, Karina E Clemmensen, Andreas Hagenbo, Erik Karltun and Björn D Lindahl (2017) Shift in fungal communities and associated enzyme activities along an age gradient of managed Pinus sylvestris stands. The ISME Journal 11, 863–874. Doi:10.1038/ismej.2016.184;

Susanne Lindquist

No publication based on the SciLifeLab service described in Synergy#1, has yet been published.

Kristina Broliden

  • Birse KD, Romas LM, Guthrie BL, Nilsson P, Bosire R, Kiarie J, Farquhar C, Broliden K, Burgener AD (2016) Genital injury signatures and microbiome alterations associated with depot medroxyprogesterone acetate usage and intravaginal drying practices. J Infect Dis. 2016 Dec 23. pii: jiw590. DOI: 10.1093/infdis/jiw590.

Manuscript: Other manuscript are underway

Mårten Färnö

No publication based on the SciLifeLab service described in Synergy#1, has yet been published.