BEGIN:VCALENDAR
VERSION:2.0
PRODID:-//SciLifeLab - ECPv6.15.18//NONSGML v1.0//EN
CALSCALE:GREGORIAN
METHOD:PUBLISH
X-ORIGINAL-URL:https://www.scilifelab.se
X-WR-CALDESC:Events for SciLifeLab
REFRESH-INTERVAL;VALUE=DURATION:PT1H
X-Robots-Tag:noindex
X-PUBLISHED-TTL:PT1H
BEGIN:VTIMEZONE
TZID:Europe/Stockholm
BEGIN:DAYLIGHT
TZOFFSETFROM:+0100
TZOFFSETTO:+0200
TZNAME:CEST
DTSTART:20210328T010000
END:DAYLIGHT
BEGIN:STANDARD
TZOFFSETFROM:+0200
TZOFFSETTO:+0100
TZNAME:CET
DTSTART:20211031T010000
END:STANDARD
BEGIN:DAYLIGHT
TZOFFSETFROM:+0100
TZOFFSETTO:+0200
TZNAME:CEST
DTSTART:20220327T010000
END:DAYLIGHT
BEGIN:STANDARD
TZOFFSETFROM:+0200
TZOFFSETTO:+0100
TZNAME:CET
DTSTART:20221030T010000
END:STANDARD
BEGIN:DAYLIGHT
TZOFFSETFROM:+0100
TZOFFSETTO:+0200
TZNAME:CEST
DTSTART:20230326T010000
END:DAYLIGHT
BEGIN:STANDARD
TZOFFSETFROM:+0200
TZOFFSETTO:+0100
TZNAME:CET
DTSTART:20231029T010000
END:STANDARD
END:VTIMEZONE
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220524T100000
DTEND;TZID=Europe/Stockholm:20220524T110000
DTSTAMP:20260404T083859
CREATED:20220504T155131Z
LAST-MODIFIED:20220504T155220Z
UID:10000601-1653386400-1653390000@www.scilifelab.se
SUMMARY:Solid tumours as dynamic cellular ecosystems
DESCRIPTION:Dr. Alex Swarbrick\, Garvan Institute for Medical Research\, Australia \n\n\n\nLocation: Air/FireDate: 10.00 24th of May \n\n\n\nAbstract: A well-established principle in developmental biology is that cellular context governs cell fate\, differentiation\, proliferation and survival. There is emerging evidence that solid tumours are also complex cellular systems\, or ecosystems\, in which interactions between neoplastic\, stromal and immune cells govern the natural history of disease and response to treatment. In this seminar Dr Swarbrick will discuss his latest research applying cellular genomics to understanding breast cancer ecosystems\, with the aim of making new discoveries relevant to disease stratification and treatment.
URL:https://www.scilifelab.se/event/solid-tumours-as-dynamic-cellular-ecosystems/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Event
ORGANIZER;CN="Joakim Lundeberg":MAILTO:joakim.lundeberg@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220502T080000
DTEND;TZID=Europe/Stockholm:20220506T170000
DTSTAMP:20260404T083859
CREATED:20220224T100439Z
LAST-MODIFIED:20220224T131919Z
UID:10000535-1651478400-1651856400@www.scilifelab.se
SUMMARY:Spatial analysis of gene expression in tissues
DESCRIPTION:Single-cell genomics technologies have become widely used to study heterogeneous and dynamic biological systems. In order to meet the growing demand for a deeper understanding of tissue profiling\, a number of different spatial transcriptomics approaches have been developed and applied successfully. \n\n\n\nThe goal of this practical course is to provide participants with an overview of the different spatially resolved transcriptome mapping techniques\, learn about the differences and advantages of each technique\, and how to choose and employ the techniques when designing their study. \n\n\n\nThe course includes practical work with hands-on wet-lab work and imaging sessions as well as primary data analysis for three technologies in two practical formats: Visium/Spatial Transcriptomics (ST) as an unbiased method\, and In Situ Sequencing (ISS)/Scrinshot as targeted methods. \n\n\n\nThe lectures will cover the following topics: Visium/ST\, ISS/Scrinshot\, osmFISH\, seqFISH+\, Slide-seqV2\, MERFISH\, CellPhoneDB as well as Human Cell Atlas. \n\n\n\nThe course is aimed at the graduate student and postdoctoral level\, but applications from scientists at all levels are welcome.Registration deadline: 18 March \n\n\n\nRead more and register\n\n\n\n\n\n\n\nCourse Flyer
URL:https://www.scilifelab.se/event/spatial-analysis-of-gene-expression-in-tissues/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Course
ORGANIZER;CN="Joakim Lundeberg":MAILTO:joakim.lundeberg@scilifelab.se
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Stockholm:20220318T150000
DTEND;TZID=Europe/Stockholm:20220318T163000
DTSTAMP:20260404T083859
CREATED:20220224T131344Z
LAST-MODIFIED:20220224T131459Z
UID:10000537-1647615600-1647621000@www.scilifelab.se
SUMMARY:Mapping human tissue architecture using spatial transcriptomics
DESCRIPTION:Omer Ali Bayraktar\, PhDWellcome Sanger Institute\, UK \n\n\n\nAbstract \n\n\n\nSpatial transcriptomic technologies promise to resolve cellular wiring diagrams of tissues in health and disease\, but comprehensive mapping of cell types in situ remains a challenge. First\, I will present сell2location\, a principled Bayesian model that can resolve fine-grained cell types in spatial transcriptomic data and create comprehensive cellular maps of diverse tissues. We comprehensively assess cell2location in three different tissues and demonstrate its versatility for mapping complex tissue architecture. Second\, I will introduce our work on dissecting tissue pathology in severe COVID-19 and demonstrate how integrated single cell and spatial transcriptomics can map the cellular landscape of alveolar damage in the human lung. \n\n\n\n \n\n\n\nBiography \n\n\n\nDr Bayraktar is a neuroscientist interested in studying human brain development and disease. His technical interests are focused on high-throughput spatial genomics. Omer was a postdoctoral fellow in David Rowitch’s lab\, where he developed new spatial genomic pipelines for mapping large tissues and discovered astroglial layers in the cerebral cortex. Omer started his research group in the Cellular Genetics Programme at the Wellcome Sanger Institute in 2018. His group has developed new computational tools to integrate single cell and spatial transcriptomics data for comprehensive mapping of cell types across complex tissues. \n\n\n\nCurrently\, Omer is leading the Sanger-EBI High-Throughput Spatial Genomics Team to develop experimental and computational platforms to map human tissue architecture at scale.
URL:https://www.scilifelab.se/event/mapping-human-tissue-architecture-using-spatial-transcriptomics/
LOCATION:Air&Fire\, SciLifeLab Stockholm\, Tomtebodavägen 23A\, Solna\, Sweden
CATEGORIES:Event
ORGANIZER;CN="Joakim Lundeberg":MAILTO:joakim.lundeberg@scilifelab.se
END:VEVENT
END:VCALENDAR