EQUIPMENT

NMR spectrometers and main probe configuration

Gothenburg

• Oxford 900 pumped magnet, Bruker Avance III HD spectrometer, 5 mm TCI cryoprobe
• Oxford 800 pumped magnet, Bruker Avance III HD spectrometer, cooled SampleJet sample changer, 3 mm TCI cryoprobe
• Oxford 800 magnet,  Bruker Avance III HD spectrometer, SampleJet sample changer, 5 mm TXO cryoprobe
• Bruker 700 Avance III HD spectrometer, SampleJet sample changer, 5 mm QCI cryoprobe
• Varian INOVA 600 spectrometer, 3.2 mm MAS solids probe
• Bruker 600 Avance III HD spectrometer, cooled SampleJet sample changer, alternately a 5 mm RT BBI probe for Bruker IVDr operation or a 5 mm diffusion/imaging probe

Umeå

• Bruker 850 Avance III HD spectrometer, 5mm TXI cryoprobe, sample changer
• Bruker 600 MHz Avance III, cooled SampleJet sample changer
• Bruker 500 MHz Avance III

Sample preparation equipment

Gothenburg

• Bruker SamplePro L liquid handling robot
• Agilent Bravo liquid handling robot

Umeå

• Bruker SamplePro L liquid handling robot

RECENT PROJECTS

Structural biology

• Burmann BM, Gerez JA, Matecko-Burmann I, Campioni S, Kumari P, Ghosh D, Mazur A, Aspholm EE, Sulskis D, Wawrzyniuk M, et al. Regulation of alpha-synuclein by chaperones in mammalian cells. Nature 2019, doi:10.1038/s41586-019-1808-9.
• Gustavsson E, Isaksson L, Persson C, Mayzel M, Brath U, Vrhovac L, Ihalainen JA, Karlsson BG, Orekhov V, Westenhoff S. Modulation of Structural Heterogeneity Controls Phytochrome Photoswitching. Biophysical Journal 2019, doi:https://doi.org/10.1016/j.bpj.2019.11.025.
• Verteramo ML, Stenström O, Ignjatović MM, Caldararu O, Olsson MA, Manzoni F, Leffler H, Oksanen E, Logan DT, Nilsson UJ, et al. Interplay between Conformational Entropy and Solvation Entropy in Protein-Ligand Binding. Journal of the American Chemical Society 2019, 141:2012-2026, doi:10.1021/jacs.8b11099.
• Zhou S, Pettersson P, Brzezinski P, Ädelroth P, Mäler L. NMR Study of Rcf2 Reveals an Unusual Dimeric Topology in Detergent Micelles. ChemBioChem 2018, 19:444-447, doi:10.1002/cbic.201700664.

Metabolomics

• Lindqvist HM, Rådjursöga M, Malmodin D, Winkvist A, Ellegård L. Serum metabolite profiles of habitual diet: evaluation by 1H-nuclear magnetic resonance analysis. American Journal of Clinical Nutrition 2019, 110:53-62, doi:10.1093/ajcn/nqz032.
• Malmodin D, Pedersen A, Karlsson BG, Forsander G. NMR Spectroscopic Analysis to Evaluate the Quality of Insulin: Concentration, Variability, and Excipient Content. J Diabetes Sci Technol 2019:1932296819831995, doi:10.1177/1932296819831995.
• Andersson-Hall U, Gustavsson C, Pedersen A, Malmodin D, Joelsson L, Holmäng A. Higher concentrations of BCAAs and 3-HIB are associated with insulin resistance in the transition from gestational diabetes to type 2 diabetes. Journal of Diabetes Research 2018, 2018, doi:10.1155/2018/4207067.
• Brunius C, Pedersen A, Malmodin D, Karlsson BG, Andersson LI, Tybring G, Landberg R. Prediction and modeling of pre-analytical sampling errors as a strategy to improve plasma NMR metabolomics data. Bioinformatics 2017, 33, doi:10.1093/bioinformatics/btx442.

Chemical biology

• Michel, M., T. Visnes, E. J. Homan, B. Seashore-Ludlow, M. Hedenstrom, E. Wiita, K. Vallin, C. B. J. Paulin, J. X. Zhang, O. Wallner, M. Scobie, A. Schmidt, A. Jenmalm-Jensen, U. W. Berglund, and T. Helleday. Computational and Experimental Druggability Assessment of Human DNA Glycosylases, Acs Omega, 2019. 4: 11642-56

Data sampling, signal processing and data analysis

• Qu X, Huang Y, Lu H, Qiu T, Guo D, Agback T, Orekhov V, Chen Z. Accelerated Nuclear Magnetic Resonance Spectroscopy with Deep Learning. Angew Chem Int Ed Engl 2019, doi:10.1002/anie.201908162.
• Pustovalova Y, Mayzel M, Orekhov VY. XLSY: Extra-Large NMR Spectroscopy. Angew Chem Int Ed Engl 2018, 130:14239-14241, doi:10.1002/ange.201806144.