Janne Lehtiö

David Tamborero, Rodrigo Diestmann, Rachid, M.H, […] Janne Lehtiö. Support systems to guide clinical decision-making in precision oncology: The Cancer Core Europe Molecular Tumor Board Portal. Nat Med. 2020. Jul 06. 

Johansson HJ, Socciarelli F, Vacanti NM, Haugen MH, Zhu Y, Siavelis I, Fernandez-Woodbridge A, Aure MR, Sennblad B, Vesterlund M, Branca RM, Orre LM, Huss M, Fredlund E, Beraki E, Garred Ø, Boekel J, Sauer T, Zhao W, Nord S, Höglander EK, Jans DC, Brismar H, Haukaas TH, Bathen TF, Schlichting E, Naume B; Consortia Oslo Breast Cancer Research Consortium (OSBREAC), Luders T, Borgen E, Kristensen VN, Russnes HG, Lingjærde OC, Mills GB, Sahlberg KK, Børresen-Dale AL, Lehtiö J. Breast cancer quantitative proteome and proteogenomics landscape. Nat Commun. 2019 Apr 8;10(1):1600.

Pernemalm M, Sandberg A, Zhu Y, Boekel J, Tamburro D, Schwenk JM, Björk A, Wahren-Herlenius M, Åmark H, Östenson CG, Westgren M, Lehtiö J. In-depth human plasma proteome analysis capture tissue proteins and transfer of protein variants across the placenta. Elife. 2019 Apr 8;8. pii: e41608.

Orre LM, Vesterlund M, Pan Y, Arslan T, Zhu Y, Fernandez Woodbridge A, Frings O, Fredlund E, Lehtiö J. SubCellBarCode: Proteome-wide Mapping of Protein Localization and Relocalization. Mol Cell. 2019 Jan 3;73(1):166-182.

Zhu Y, Orre LM, Johansson HJ, Huss M, Boekel J, Vesterlund M, Fernandez-Woodbridge A, Branca RMM, Lehtiö J. Discovery of coding regions in the human genome by integrated proteogenomics analysis workflow. Nature Commun. 2018 Mar 2;9(1):903.

Panizza E, Branca RMM, Oliviusson P, Orre LM, Lehtiö J. Isoelectric point-based fractionation by HiRIEF coupled to LC-MS allows for in-depth quantitative analysis of the phosphoproteome. Sci Rep. 2017 Jul 3;7(1):4513. doi: 10.1038/s41598-017-04798-z.

Zhu Y, Engström PG, Tellgren-Roth C, Baudo CD, Kennell JC, Sun S, Billmyre RB, Schröder MS, Andersson A, Holm T, Sigurgeirsson B, Wu G, Sankaranarayanan SR, Siddharthan R, Sanyal K, Lundeberg J, Nystedt B, Boekhout T, Dawson TL Jr, Heitman J, Scheynius A, Lehtiö J. Proteogenomics produces comprehensive and highly accurate protein-coding gene annotation in a complete genome assembly of Malassezia sympodialis. Nucleic Acids Res. 2017 Jan 18

Boekel J, Chilton J, Cooke I, Horvatovich P, Jagtap P, Käll L, et al. Multi-omic data analysis using Galaxy. Biotechnol. 2015 Feb;33(2):137-9

Zhu Y, Hultin-Rosenberg L, Forshed J, Branca R, Orre L, Lehtiö J. SpliceVista, a tool for splice variant identification and visualization in shotgun proteomics data Mol. Cell Proteomics 2014 Jun;13(6):1552-62

Branca R.M., OrreL.M., JohanssonH.J., Granholm V., HussM., Pérez-BercoffÅ., ForshedJ., KällL., Lehtiö J. HiRIEF LC-MS enables deep proteome coverage and unbiased proteogenomics. Nature Methods, 2014 Jan;11(1):59-62.

Johansson H.J, Sanchez B.C., Mundt F., Forshed J., Lundgren B., Martens U., Kovacs A., Máthé G., Yakhini Z., Helou K., Einbeigi Z., Krawiec K., Kanter L., Hjerpe A., Stål O., Linderholm B.K., Lehtiö J. Retinoic acid receptor alpha has potential predictive value in tamoxifen treated breast cancer patients. Nature Commun. 2013. Jul 19;4:2175.

Sandberg A, Lindell G, Nordstrom-Källström B, Branca RM, Gemzell Danielsson K, Dahlberg M, Larson B, Forshed J, Lehtiö J. Tumo proteomics by multivariate analysis on individual pathway data for characterization of vulvar cancer phenotypes. Mol Cell Proteomics. 2012Jul;11(7)