Joakim Lundeberg


Joakim Lundeberg
Genomics

KTH Royal Institute of Technology

Research interests

Professor Joakim Lundeberg heads the division of Gene Technology, part of the School of Biotechnology, KTH Royal Institute of Technology and has a competence in molecular technology development including applied bioinformatics in the fields of genomics and transcriptomics with applications in both medicine and environment. Applications cover for example cancer, brain, heart, stem cells, plants. The research has resulted in several publications in Nature, Science, PNAS. His research group is since May 2010 located at the Science for Life Laboratory (SciLifeLab).

Prof Lundeberg also heads the National Genomics Infrastructure (NGI) platform equipped with all major massively parallel sequencing systems. NGI is among the major sequencing sites in Europe with > 30 MPS instruments (including the activities in NGI Uppsala).

Lundeberg has over 15 patent and patent applications and has established several spin-off companies based on his research.

Group members

Florian Baumgarten, Master student
Magdalena Lindberg, Master student
Annelie Mollstrand, PhD/Lab coordinator
Elin Johansson, Project worker
Emelie Berglund, Project worker
Erik Sjölund, Programmer
Michaela Asp, PhD student
Benjamin Sigurgeirsson, PhD student
Anders Jemt, PhD student
Beata Werne Solnestam, PhD student
Fredrik Salmén, PhD student
Stefania Giacomello, PhD/Postdoc
Karl Strååt, PhD/Postdoc
Aleksandra Jurek, PhD/Postdoc

Associated staff at SciLifeLab
Anna Lundmark, PhD-student (Tulay Lindberg)
Patrik Ståhl, PhD/Researcher (Jonas Frisen)
Joel Sjöstrand, PhD/Postdoc (Jonas Frisen)
Jose Fernandez Navarro, Programmer (Jonas Frisen)
Emilie Weibull, PhD/Postdoc (Lars Klareskog)
Henrik Green, PhD/Researcher

Key publications

  • Stranneheim H, Käller M, Allander T, Andersson B, Arvestad Land Lundeberg J. Classification of DNA sequences using Bloom filters. Bioinformatics. 2010 Jul 1;26(13):1595-600
  • Bjursell MK, Blom HJ, Cayuela JA, Engvall ML, Lesko N, Balasubramaniam S, Brandberg G, Halldin M, Falkenberg M, Jakobs C, Smith D, Struys E, von Döbeln U, Gustafsson CM, Lundeberg J and Wedell A. Adenosine kinase deficiency disrupts the methionine cycle causing hypermethioninemia, encephalopathy and abnormal liver function. 2011 Am J Hum Genet. 2011 Oct 7;89(4):507-15.
  • Akan P, Alexeyenko A, Costea PI, Hedberg L, Solnestam BW, Lundin S, Hällman J, Lundberg E, Uhlén M, Lundeberg J. Comprehensive analysis of the genome transcriptome and proteome landscapes of three tumor cell lines. Genome Med. 2012 Nov 18;4(11):86
  • Nystedt B, Street NR, Wetterbom A, Zuccolo A, Lin YC, Scofield DG, Vezzi F, Delhomme N, Giacomello S, Alexeyenko A, Vicedomini R, Sahlin K, Sherwood E, Elfstrand M, Gramzow L, Holmberg K, Hällman J, Keech O, Klasson L, Koriabine M, Kucukoglu M, Käller M, Luthman J, Lysholm F, Niittylä T, Olson A, Rilakovic N, Ritland C, Rosselló JA, Sena J, Svensson T, Talavera-López C, Theißen G, Tuominen H, Vanneste K, Wu ZQ, Zhang B, Zerbe P, Arvestad L, Bhalerao R, Bohlmann J, Bousquet J, Garcia Gil R, Hvidsten TR, de Jong P, MacKay J, Morgante M, Ritland K, Sundberg B, Thompson SL, Van de Peer Y, Andersson B, Nilsson O, Ingvarsson PK, Lundeberg J, Jansson S. The Norway spruce genome sequence and conifer genome evolution. Nature. 2013 May 30;497(7451):579-84
  • Sigurgeirsson B, Emanuelsson O., Lundeberg J. Sequencing Degraded RNA Addressed by 3′ Tag Counting. PLoS One March 14, 2014 DOI:10.1371/journal.pone.0091851

Contact

joakim.lundeberg@scilifelab.se

More contact information

https://www.kth.se/profile/joalun/