Clinical Genomics Örebro
Clinical Genomics Örebro was established in 2019 as a collaborative effort between the Department of Laboratory Medicine and the Clinical Research Laboratory (KFL) at Örebro University Hospital together with Örebro University.
Services
Clinical Genomics Örebro has organized its services around focus areas including cancer, rare diseases, complex diseases and microbiology.
- Support with project design
- Quality control of samples prior to analysis
- Clinical exome sequencing
- Microbial whole-genome sequencing
- Targeted panels (contact us for detailed information)
- Ready-made libraries (prepared by collaborator)
- Bioinformatics support
- Clinical interpretation of variants
Applications
- Cancer
- Rare disease
- Microbiology
- Complex diseases
- Informatics
Equipment
Library preparation:
- Ion Chef
- ACSIA
- Various systems for QC and quantification
Sequencing systems:
- NextSeq (Illumin)
- MiSeq (Illumina)
- Ion S5 (Thermo Fisher)
- MinION (Oxford Nanopore)
Bioinformatics:
- 48 TB Storage
- CLC Genomics Server Software (Qiagen)
- CLC work node 384 GB RAM, 72 cores
- SeqSphere (Ridom GmbH)
- Ion Reporter local server 128 GB RAM, 15 TB storage, 20 cores
Using the unit
Gisela Helenius
Platform Scientific Director
gisela.helenius@regionorebrolan.se
Bianca Stenmark
Head of Unit
bianca.stenmark@regionorebrolan.se