Clinical Genomics Umeå

Infrastructure Unit

Contact

Richard Palmqvist, Platform Scientific Director

Pär Larsson, Head of Unit

Par.G.Larsson@regionvasterbotten.se

Recent user publications

The publications in this database are the result of research conducted at the units of SciLifeLab – both in user projects and technology development.

Plasma concentrations of gut hormones acyl ghrelin and Peptide YY and subsequent risk of colorectal cancer and molecular tumor subtypes.

S. Bodén, J. Harbs, A. Sundkvist, (…), R. Palmqvist, S. Harlid, B. Van Guelpen,

Cancer Prev Res (Phila)

Parvimonas micra is associated with tumour immune profiles in molecular subtypes of colorectal cancer.

T. Löwenmark, X. Li, A. Löfgren-Burström, (…), SN. Wai, S. Edin, R. Palmqvist,

Cancer Immunol. Immunother.71 (10) 2565-2575

Implementing precision medicine in a regionally organized healthcare system in Sweden.

T. Fioretos, V. Wirta, L. Cavelier, (…), A. Wedell, A. Edsjö, R. Rosenquist,

Nat. Med.28 (10) 1980-1982

To Modify or Not to Modify: Allele-Specific Effects of 3’UTR-KCNQ1 Single Nucleotide Polymorphisms on Clinical Phenotype in a Long QT 1 Founder Population Segregating a Dominant-Negative Mutation.

A. Winbo, UB. Diamant, J. Persson, SM. Jensen, A. Rydberg,

J Am Heart Assoc11 (18) e025981

SciLifeLab / Services / Our infrastructure / Clinical Genomics Umeå

Clinical Genomics Umeå

Clinical Genomics Umeå is a joint venture between Umeå University and the clinical laboratories at Umeå University Hospital. It operates in a tight collaboration with Genomic Medicine Center North and is an integrated part of the Department of Medical Biosciences, Umeå University.

Services

Targeted short-read sequencing
RNA analysis
Ultrasensitive variant detection
Array-based SNP analysis
Bioinformatics support
Clinical interpretation of variants

Equipments

2 x NextSeq 550 (Illumina)
MiSeq (Illumina)
Instrument for microarray analysis (Illumina)
MinION (Oxford Nanopore)
Digital droplet PCR (BioRad)
Real time PCR (BioRad)
QuantStudio 6 Flex Real-Time PCR (ThermoScientific)
Multispectral imaging microscope
Instrumentation for Sanger sequencing