NGI Uppsala offers next generation sequencing (NGS) and genotyping services of high quality using the latest technologies to academic researchers in Sweden and abroad.
NGI Uppsala consists of two facilities, the SNP&SEQ Technology Platform and Uppsala Genome Center. Our aim is to provide researchers in Sweden and abroad cost effective, flexible and expedient service.
Our wide-range of Next Generation Sequencing (NGS) services include short-read technologies using Illumina and IonS5XL instruments and long-read technologies using PacBio Sequel and Oxford Nanopore PromethION. Linked-read technology from 10xGenomics for genome-scale phasing (haplotyping) and single-cell RNA sequencing is also offered in combination with short-read Illumina sequencing. Thus our services cover a unique range of applications and solutions in the field of genomics. We also undertake technically challenging projects that can lead to development of novel NGS protocols and applications.
For genotyping we assist projects on all scales, from 1 to millions of SNPs per sample in a few to thousands of samples using the Illumina iScan and Agena MassARRAY systems.
DNA-methylation profiling is offered by array-based SNP genotyping and by whole-genome and targeted bisulfite sequencing using Illumina technology. Methylation profiling is also possible on native DNA using PacBio Sequel.
The SNP genotyping and sequencing using Illumina, Ion and PacBio technologies are accredited by SWEDAC according to the ISO/IEC 17025 quality standard.
The best set up for a particular project depends on several factors e.g. research question, amount, quality and number of samples to be analyzed, as well as the requested amount of data. Read more about our services and technologies below, or contact us to discuss the most suitable method for your project.
|Short read NGS with:||NovaSeq6000, MiSeq, iSeq (Illumina)|
|Long read NGS with:||PacBio Sequel, Sequel II and Oxford Nanopore PromethION|
|Whole-genome genotyping with:||iScan (Illumina).|
(3.000-5 million SNPs)
|Small to medium scale genotyping with:||MassARRAY (Agena BioScience),|
(1 to 1536 SNPs)
|Methylation profiling with:||iScan (Illumina), NovaSeq 6000, PacBio Sequel|
To place an order or request a project meeting, please visit the NGI Order portal: https://ngisweden.scilifelab.se/
For more information about our services and facilities, please visit our websites:
(Genotyping and Illumina sequencing)
(PacBio, IonS5XL, Oxford Nanopore PromethION)
Uppsala Genome Center
Dept of Immunology, Genetics and Pathology
Biomedicinskt Centrum (BMC),
751 08 Uppsala, Sweden
SNP&SEQ Technology Platform
Dept of Medical Sciences
Biomedicinskt Centrum (BMC)
SE-751 44 Uppsala, Sweden
Science for Life Laboratory,
Biomedical Centre (BMC),
752 37 Uppsala, Sweden
Necessary cookies are absolutely essential for the website to function properly. This category only includes cookies that ensures basic functionalities and security features of the website. These cookies do not store any personal information.
Any cookies that may not be particularly necessary for the website to function and is used specifically to collect user personal data via analytics, ads, other embedded contents are termed as non-necessary cookies. It is mandatory to procure user consent prior to running these cookies on your website.