NGI Uppsala offers next generation sequencing (NGS) and genotyping services of high quality using the latest technologies to academic researchers in Sweden and abroad.
NGI Uppsala consists of two facilities, the SNP&SEQ Technology Platform and Uppsala Genome Center. Our aim is to provide researchers in Sweden and abroad cost effective, flexible and expedient service.
Our wide-range of Next Generation Sequencing (NGS) services include short-read technologies using Illumina and IonS5XL instruments and long-read technologies using PacBio Sequel and Oxford Nanopore PromethION. Single-cell applications using the 10x Genomics system is also offered in combination with short-read Illumina sequencing. Thus our services cover a unique range of applications and solutions in the field of genomics. We also undertake technically challenging projects that can lead to development of novel NGS protocols and applications.
For genotyping we assist projects on all scales, from 1 to millions of SNPs per sample in a few to thousands of samples using Illumina iScan and Agena MassARRAY systems.
DNA-methylation profiling is offered by array-based SNP genotyping and by whole-genome and targeted bisulfite sequencing using Illumina technology. Methylation profiling is also possible on native DNA using PacBio Sequel.
The SNP genotyping and sequencing using Illumina, Ion and PacBio technologies are accredited by SWEDAC according to the ISO/IEC 17025 quality standard.
The best set up for a particular project depends on several factors e.g. research question, amount, quality and number of samples to be analyzed, as well as the requested amount of data. Read more about our services and technologies below or visit our website for a for a full list of the services that we offer: https://ngisweden.scilifelab.se/
|Short read NGS with:||NovaSeq6000, MiSeq, iSeq (Illumina)|
|Long read NGS with:||PacBio Sequel, Sequel II and Oxford Nanopore PromethION|
|Genotyping on small to genome wide scale with:||iScan (Illumina)|
MassARRAY (Agena BioScience) *Will be phased out and removed from our service during fall 2020
|Methylation profiling with:||iScan (Illumina), NovaSeq 6000, PacBio Sequel|
For more information about the NGI nodes in Uppsala, visit the node-specific websites:
(Genotyping and Illumina sequencing)
Uppsala Genome Center (PacBio, Ion, Oxford Nanopore)
Uppsala Genome Center
Dept of Immunology, Genetics and Pathology
Biomedicinskt Centrum (BMC),
751 08 Uppsala, Sweden
SNP&SEQ Technology Platform
Dept of Medical Sciences
Biomedicinskt Centrum (BMC)
SE-751 44 Uppsala, Sweden
Science for Life Laboratory,
Biomedical Centre (BMC),
752 37 Uppsala, Sweden
Do not use these addresses for sending samples. For information on how to send samples, please visit the Sample Submission page.
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