Courses
SciLifeLab offer training and workshops for current and potential SciLifeLab infrastructure users, such as PhD students, postdocs, investigators and other employees within all Swedish universities.
The educational activities cover knowledge and understanding about the advanced techniques and data analysis methods available at the SciLifeLab technical platforms. In general, they are aimed for researches who have not previously been aware of – or lacked access to – the technologies SciLifeLab provides. You can learn how to benefit from SciLifeLab’s scientific resources, how to plan your projects and how to analyze your data. The workshops are usually shorter than other educational activities and more focused on a single subject.
Please note that SciLifeLab training courses do not provide any formal university credits.
The course content is estimated to correspond to a certain number of credits, however the estimated credits are just guidelines.
If formal credits are crucial, the student needs to confer with the home department before course application, whether the course is valid for formal credits or not.
Please note that The SciLifeLab The Svedberg Seminar series is also a research course for graduate students.
2019-05-01 - 2019-12-31, Course | Web course
Introduction to high throughput screening, 2 ECTS
The course gives a broad introduction to high throughput screening (HTS) that is technique used to identify biologically active small organic molecules through screening of compound libraries with the help of robust test systems and advanced instrumentation. No deadline for application.
2019-08-19 - 2019-08-30, Course | Uppsala
Advanced Molecular Technology and Instrumentation for Proteome Analyses
The course will provide insight into state-of-the-art technologies for proteome analyses in research and medicine via advanced molecular technologies, reagent resources and instrumentation. The course will convey, by lectures and hands-on training, information about established and emerging methods and technologies relevant in basic research and diagnostics. Affinity- and non-affinity-based methods for protein analyses will be covered. Application deadline: July 5, 2019
2019-08-26 - 2019-08-30, Course | Solna
Epigenomics data analysis
This course builds on our previous ChIP-seq data analysis course to introduce the best practice bioinformatics methods for processing, analyses and integration of epigenomics data. Application deadline: July 21, 2019
2019-09-09 - 2019-09-13, Course | Uppsala
Introduction to Bioinformatics using NGS data, Uppsala
The course will provide an entry-level introduction to a wide range of analytical techniques for massively parallel sequencing, including basic Linux commands. We will pair lectures on the theory of analysis algorithms with practical computational exercises demonstrating the use of common tools for analyzing data from each of several common sequencing study designs. Application deadline: June 14, 2019
2019-09-09 - 2019-09-12, Course | Solna
Omics Integration and Systems Biology
The aim of this workshop is to provide an integrated view of biological network construction and integration, constraint-based modelling, multi-omics integration and hypothesis generation. Application deadline: June 28, 2019
2019-09-10 - 2019-09-11, Course | Solna
Teaching Workshop: Content- to Outcomes (using the Mastery Rubric for Bioinformatics as a tool for curriculum design)
This workshop is open for the Life Science community across Sweden wanting to improve their teaching/training skills. Especially targeting people engaged and interested in course development, both stand-alone courses and courses in a more formal/longer curricula. Due to limited space the course can accommodate maximum of 20 participants. First come first served basis
2019-09-17 - 2019-09-18, Course | Solna
Bioinformatics for Principal Investigators
The course will give an introduction to some of the challenges you as a research leader might face in your projects where bioinformatics tools and research is used; to provide guidance on strategies for managing data and the importance of data sharing; how to encourage bioinformatics development in your team and / or work with collaborators and what resources are available, with special focus on resources within SciLifeLab. Application deadline: August 14, 2019
2019-09-17 - 2019-09-19, Course | Umeå
Basic Course in SEM and TEM
The aim of this course is to provide general introduction of EM to research students, postdoctoral fellows and technical staff, who would like to work with EM methods in their projects. Application deadline: August 30, 2019
2019-09-23 - 2019-09-27, Course | Solna
Single particle Cryo-EM image processing
This course provides a theoretical and practical introduction to cryo-EM image processing. It consists of morning lectures and computational image processing practicals in the afternoon. It focuses mainly on single particle cryo-EM data analysis and will not cover cell tomography. Application deadline: September 1, 2019
2019-10-07 - 2019-10-11, Course | Uppsala
Python programming with applications to bioinformatics, Uppsala
This course provides a practical introduction to the writing of Python programs for the complete novice. Participants are lead through the core aspects of Python illustrated by a series of example programs. Upon completion of the course, attentive participants will be able to write simple Python programs from scratch and to customize more complex code to fit their needs. National course open for PhD students, postdocs, researchers and other employees in need of fundamental Python skills within all Swedish universities. Application deadline, September 4, 2019
2019-10-07 - 2019-10-11, Course | Umeå
Python programming with applications to bioinformatics, Umeå
This course provides a practical introduction to the writing of Python programs for the complete novice. Participants are lead through the core aspects of Python illustrated by a series of example programs. Upon completion of the course, attentive participants will be able to write simple Python programs from scratch and to customize more complex code to fit their needs. National course open for PhD students, postdocs, researchers and other employees in need of fundamental Python skills within all Swedish universities. Application deadline, September 4, 2019
2019-10-13 - 2019-10-18, Course | Leysin, Switzerland
Joint SIB / SciLifeLab Autumn School Single Cell Analysis
This schools aims at training students and young researchers in cutting-edge methodologies about single cell analysis in the various omics. With a mix of lectures and hands-on sessions, supervised by expert speakers / tutors, and in a nice environment and atmosphere, we are convinced that this School will meet your expectations. Application deadline: August 31, 2019
2019-10-14 - 2019-10-16, Course | Uppsala
Microbial single cell genomics workshop – from environment to infection
This course will cover theoretical and practical aspects of single cell analysis with focus on microbial single cell genomics and host-pathogen interactions in the practical part. Application deadline: September 16, 2019
2019-10-23 - 2019-10-25, Course | Solna
Chemical Proteomics
This course will cover most updated chemical proteomics strategies available for identifying proteome-wide compound-target interactions, which ChemProt provides at the state-of-the-art level. Application deadline: September 23, 2019
2019-11-05 - 2019-11-07, Course | Solna
Hands on Immunofluorescence
The purpose of the course is to get experience from preparing samples for immunofluorescence and learn about fluorescence microscopy and how to acquire images from confocal microscopes. The course will combine theory and hands on work by performing a typical immunofluorescence workflow.
Participants will start in the cell lab with cell culturing and seeding, perform immunostaining with three markers and a target protein of choice (if applicable), and image the samples using a confocal microscope. At the microscope the concept of fluorescence will be demonstrated and some exercises will be done to illustrate how confocal microscopy and fluorescence microscopy works. The course will also cover annotation of immunofluorescence images and students will get practice on annotating images acquired. Application deadline: October 1, 2019
2019-11-25 - 2019-11-29, Course | Lund
Introduction to Bioinformatics using NGS data, Lund
The course will provide an entry-level introduction to a wide range of analytical techniques for massively parallel sequencing, including basic Linux commands. We will pair lectures on the theory of analysis algorithms with practical computational exercises demonstrating the use of common tools for analyzing data from each of several common sequencing study designs. Application deadline: October 14, 2019
2019-11-25 - 2019-11-29, Course | Uppsala and Solna
Biophysical methods in drug discovery
The course will focus on different biophysical methods used for characterising protein-ligand interactions in drug discovery projects. It will cover a range of biophysical methods used to characterize interactions between drug target proteins and potential inhibitory compounds, and how to use the information for lead generation. The methods include, but are not limited to those offered at the three SciLifeLab facilities. The course consists of lectures with active discussion from the participants, computer exercises, and demonstrations in the form of laboratory experiments. Application deadline: October 24, 2019.
