Courses


SciLifeLab offer training and workshops for current and potential SciLifeLab infrastructure users, such as PhD students, postdocs, investigators and other employees within all Swedish universities.

The educational activities cover knowledge and understanding about the advanced techniques and data analysis methods available at the SciLifeLab technical platforms. In general, they are aimed for researches who have not previously been aware of – or lacked access to – the technologies SciLifeLab provides. You can learn how to benefit from SciLifeLab’s scientific resources, how to plan your projects and how to analyze your data. The workshops are usually shorter than other educational activities and more focused on a single subject. Please note that The SciLifeLab The Svedberg Seminar series is also a research course for graduate students.


2018-09-24 - 2018-09-28, Course | Stockholm

Single particle Cryo-EM image processing

This course provides a theoretical and practical introduction to cryo-EM image processing. It consists of morning lectures and computational image processing practicals in the afternoon. It focuses mainly on single particle cryo-EM data analysis and will not cover cell tomography. Application deadline: September 10

2018-10-02 - 2018-10-04, Course | Umeå

Basic Course in Electron Micorscopy (SEM and TEM) at Umeå University

This course covers fundamental theory and operational principles as well as specimen preparation techniques for scanning and transmission electron microscopy (SEM and TEM). Application deadline: September 15

2018-10-09 - 2018-10-11, Course | Stockholm

ELIXIR-EXCELERATE Train the Trainer

ELIXIR-EXCELERATE, in collaboration with ELIXIR Sweden and ELIXIR-IIB, is pleased to announce a Train the Trainer (TtT) event. This course is meant to offer guidance, ideas and tips for training/teaching design, development and delivery based on research-driven educational principles. Examples and discussions will also focus on the challenges presented by academic teaching. Application deadline: When the number of participants reaches 20

2018-10-24 - 2018-10-26, Course | Stockholm

Chemical Proteomics 2018

This course will cover most updated chemical proteomics strategies available for identifying proteome-wide compound-target interactions, which ChemProt provides at the state-of-the-art level. Application deadline, October 10

2018-11-07 - 2018-11-09, Course | Stockholm

ChIP-seq data analysis

This course will introduce the best practice bioinformatics methods for processing and analyses of ChIP-seq data via a series of lectures, group work and computer practicals. Application deadline, September 28

2018-11-12 - 2018-11-16, Course | Umeå

Introduction to Bioinformatics using NGS data, Umeå

The course will provide an entry-level introduction to a wide range of analytical techniques for massively parallel sequencing, including basic Linux commands. We will pair lectures on the theory of analysis algorithms with practical computational exercises demonstrating the use of common tools for analyzing data from each of several common sequencing study designs. Application deadline: September 27

2018-11-12 - 2018-11-16, Course | Uppsala

R programming foundations for Life Science

The course covers fundamental concepts of programming and software design focusing on programming in R. We will go through various aspects of R scripting emphasizing the parts useful for life scientists. After introductory lectures on good programming practices, basic software design theory and a brief overview of R, we will delve into programming. We will give you tools to access help and information on R-related challenges and issues, spend some time learning how to install external packages, how to find bugs and address common installation issues. The course will be given by experienced computational biologists from SciLifeLab and Uppsala University. Application deadline, October 1

2018-11-14 - 2018-11-16, Course | Umeå

RNA-seq data analysis

This workshop will introduce the best practice bioinformatics methods for processing and analyses of RNA-seq data via a series of lectures and computer practicals. Application deadline: October 2

2018-11-19 - 2018-11-23, Course | Uppsala

Python programming with applications to bioinformatics

This course provides a practical introduction to the writing of Python programs for the complete novice. Participants are lead through the core aspects of Python illustrated by a series of example programs. Upon completion of the course, attentive participants will be able to write simple Python programs from scratch and to customize more complex code to fit their needs. National course open for PhD students, postdocs, researchers and other employees in need of fundamental Python skills within all Swedish universities. Application deadline, October 11

2018-11-20 - 2018-11-22, Course | Uppsala

De Novo Genome assembly

The course is mostly aimed at researchers getting into their first de novo genome assembly project, but will also include information of use for the more experienced researcher. We will cover assembly of both prokaryotes and eukaryotes and spend a lot of time on learning how to run the analyses in hands-on computer exercises. Application deadline: October 15

2018-11-28 - 2018-11-29, Course | Göteborg

Tools for Reproducible Research

National course open for PhD students (prioritized), postdocs, researchers and other employees within all Swedish universities with interest in making their computational analysis more reproducible. Application deadline: October 26